Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003666.1

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Forward (+)

39460 .. 40570

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003666.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggcaatcgacatcgcaaccttagagaagagaggtcagcaggcagcaccaccttcaattcagtacattaattcctgcaggaagcactgtgtttcacctaatgatgcaattctctctgttctgtttaaggctgaggtaaaaaagtcttgcaatgagctctgtagcctggagatttcattggaccatcttaaggatgctgagttcccaccacttcttgatttatgtatggaactttatgcttctgaggttgaagcagttgacatatgcaatgaatcattgcatgttttgaatggaaaatatgcgctgttgttgatgcgtgctatcaatcaaaagcttcgagttgttgatctccaagatctggcatttggaaaggattttcttgaggtaaacactagtgtttgttacagttggctttgtgttaatggtttaaatctaagtttgttgtccactatgtcactatgtcctatatacacgcactttcgtagtaaaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

164

Amino Acids

18.33

Weight (kDa)

5.53

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	190, 358
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	57, 251, 289
AhlI	ACTAGT	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	165
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
AluBI	AGCT	2 cut(s)	157, 334
AluI	AGCT	2 cut(s)	157, 334
Alw21I	GWGCWC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	44
AseI	ATTAAT	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	2 cut(s)	76, 160
BfrI	CTTAAG	1 cut(s)	188
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	3 cut(s)	94, 184, 303
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 358
Bse3DI	GCAATG	3 cut(s)	157, 274, 275
BseBI	CCWGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	190, 358
BseMI	GCAATG	3 cut(s)	157, 274, 275
BseMII	CTCAG	3 cut(s)	123, 189, 234
BseXI	GCAGC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	190, 358
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	346, 355
BspCNI	CTCAG	3 cut(s)	124, 190, 235
BspMAI	CTGCAG	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	3 cut(s)	157, 274, 275
BssMI	GATC	2 cut(s)	346, 355
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	89, 407
Bst6I	CTCTTC	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	42, 318
BstDEI	CTNAG	5 cut(s)	22, 132, 198, 243, 434
BstF5I	GGATG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	349, 358
BstMBI	GATC	2 cut(s)	346, 355
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	2 cut(s)	76, 160
BstV1I	GCAGC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	42, 318
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	5 cut(s)	131, 157, 165, 334, 412
CviKI_1	RGCY	5 cut(s)	131, 157, 165, 334, 412
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	5 cut(s)	22, 132, 198, 243, 434
DpnI	GATC	2 cut(s)	348, 357
DpnII	GATC	2 cut(s)	346, 355
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	1 cut(s)	284
FatI	CATG	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	272
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	3 cut(s)	259, 388, 447
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	215, 380
Hpy8I	GTNNAC	3 cut(s)	259, 388, 447
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	2 cut(s)	89, 407
HpyCH4V	TGCA	5 cut(s)	78, 107, 150, 267, 280
HpyF3I	CTNAG	5 cut(s)	22, 132, 198, 243, 434
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	346, 355
LpnPI	CCDG	6 cut(s)	26, 64, 88, 152, 179, 344
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	3 cut(s)	94, 184, 303
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	401, 453
MalI	GATC	2 cut(s)	348, 357
MboI	GATC	2 cut(s)	346, 355
MboII	GAAGA	1 cut(s)	40
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	57, 70, 108
MnlI	CCTC	4 cut(s)	26, 127, 238, 376
MseI	TTAA	6 cut(s)	69, 126, 189, 420, 428, 493
MspCI	CTTAAG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	263
NdeII	GATC	2 cut(s)	346, 355
NlaIII	CATG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	453
NspI	RCATGY	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	6 cut(s)	69, 126, 189, 420, 428, 493
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	346, 355
Sau96I	GGNCC	1 cut(s)	181
SbfI	CCTGCAGG	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	167
SdaI	CCTGCAGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	9 cut(s)	23, 37, 55, 100, 138, 159, 249, 336, 387
SfaNI	GCATC	3 cut(s)	94, 184, 303
SfcI	CTRYAG	2 cut(s)	76, 160
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	188, 380
SmoI	CTYRAG	2 cut(s)	188, 380
SpeI	ACTAGT	1 cut(s)	392
Sse8387I	CCTGCAGG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	57, 70, 108
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	89, 407
TaqI	TCGA	2 cut(s)	9, 337
TasI	AATT	3 cut(s)	57, 70, 108
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	6 cut(s)	69, 126, 189, 420, 428, 493
Tru9I	TTAA	6 cut(s)	69, 126, 189, 420, 428, 493
TscAI	CASTG	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	453
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	453
TspDTI	ATGAA	2 cut(s)	165, 285
TspRI	CASTG	1 cut(s)	92
Van91I	CCANNNNNTGG	1 cut(s)	358
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	181
VspI	ATTAAT	1 cut(s)	69
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.