Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Reverse (-)

61330709 .. 61331639

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCAATCGACATCGCAACCTTAAAAGAGAGGTCAGCAGGCAGCACCACCTTCAATTCAGCTGAAGTAAAAAAGTCTTGCAATGAGCTCTGTAGCCTGGAGATTTCATTGGACCATCTTAAGGATGCTGAATTCCCACCACTTCTTGATTTATGTATGGAACTTGATGCTTCTGAGGTTGAAGCAGTTGACATACGCAATGAATCATTGCATGTTTTGAATGGAAAATATGTGCTGTTGTTGATGCGTGCTATCAATCAAAAGCTTCGAGTTGTTGATCTCCAAGATTTGGCATTTGGAAAGGATTTCTTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

105

Amino Acids

11.75

Weight (kDa)

4.81

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	15 - 104	3.7e-19	DWD hypersensitive to UV-B 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	121, 289
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	55, 182, 220
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	3 cut(s)	62, 88, 265
AluI	AGCT	3 cut(s)	62, 88, 265
Alw21I	GWGCWC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	91
BfrI	CTTAAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	3 cut(s)	115, 157, 234
BpmI	CTGGAG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 289
Bse3DI	GCAATG	3 cut(s)	88, 205, 206
BseBI	CCWGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	121, 289
BseMI	GCAATG	3 cut(s)	88, 205, 206
BseMII	CTCAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	121, 289
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	119
BsrDI	GCAATG	3 cut(s)	88, 205, 206
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	40, 249
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	40, 249
Cfr13I	GGNCC	1 cut(s)	112
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	4 cut(s)	62, 88, 96, 265
CviKI_1	RGCY	4 cut(s)	62, 88, 96, 265
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	154, 158, 194, 213, 231
FalI	AAGNNNNNCTT	1 cut(s)	293
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	119
Hin1II	CATG	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	146, 310
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	81, 211
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	3 cut(s)	24, 83, 110
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	3 cut(s)	115, 157, 234
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	2 cut(s)	55, 131
MnlI	CCTC	3 cut(s)	24, 169, 306
MseI	TTAA	2 cut(s)	23, 120
MspA1I	CMGCKG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	215
NspI	RCATGY	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	23, 120
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	8 cut(s)	23, 35, 53, 64, 90, 180, 267, 317
SfaNI	GCATC	3 cut(s)	115, 157, 234
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	119, 310
SmoI	CTYRAG	2 cut(s)	119, 310
Sse9I	AATT	2 cut(s)	55, 131
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	96
TaqI	TCGA	2 cut(s)	9, 268
TasI	AATT	2 cut(s)	55, 131
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	23, 120
Tru9I	TTAA	2 cut(s)	23, 120
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	96, 216
Van91I	CCANNNNNTGG	1 cut(s)	289
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.