Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Reverse (-)

59505154 .. 59507224

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAATCGACATGGCAACCTTAGAAGAGAGGTACATTAATTCCTGCAGGAAGCACTGTGTTTCACCTAATGATGCAATTCTCTCTGTTCTGTTTAAGGCTGAGGTAAACAAGTCTTGCAATGAGCTCTGTAGCCTGGAGATTTCATTGGACCATCTTAAGGATGCTGAATTCCCACCACTTCTTGATTTATGTATGGAACTTGATGCTTCTGAGCCCCTCAGCTTTCTCTCCGTCGATACCGCGAAGGTGAAGTTTCAATTTCATCCTTGTAATCCTCGCTCTGCTTCCGTCTACAGAGTTTTCACTCATATTCAGGCCTGCATCATTCAGCCTGAAGAAGATATCAAGTCCCTGTTTGCGTCCTTGGCTGCTCAGTCACACAGCAACGGCCAATTCATCTATCCCTCGGTTTTTCAGATAGAGGTTCTTCTCTTGTTCTTTTCTGTGTTAGAAGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

155

Amino Acids

17.34

Weight (kDa)

4.84

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	4 - 73	1.4e-16	DWD hypersensitive to UV-B 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	245
AciI	CCGC	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	127, 225
AluI	AGCT	2 cut(s)	127, 225
Alw21I	GWGCWC	1 cut(s)	129
AoxI	GGCC	2 cut(s)	318, 391
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	170
AseI	ATTAAT	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	57, 262
AvaII	GGWCC	1 cut(s)	151
BanII	GRGCYC	2 cut(s)	129, 219
Bbv12I	GWGCWC	1 cut(s)	129
BbvCI	CCTCAGC	2 cut(s)	102, 221
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	137
BfmI	CTRYAG	3 cut(s)	46, 130, 295
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	4 cut(s)	64, 154, 196, 333
BpmI	CTGGAG	1 cut(s)	158
Bpu10I	CCTNAGC	2 cut(s)	102, 221
BsaJI	CCNNGG	2 cut(s)	366, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	366, 408
BseGI	GGATG	2 cut(s)	169, 265
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	4 cut(s)	93, 204, 235, 389
BseXI	GCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	320, 393
BsiHKAI	GWGCWC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	320, 393
Bsp1286I	GDGCHC	2 cut(s)	129, 219
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	320, 393
BspCNI	CTCAG	4 cut(s)	94, 205, 234, 388
BspFNI	CGCG	1 cut(s)	245
BspMAI	CTGCAG	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	366, 408
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	5 cut(s)	22, 102, 213, 221, 375
BstF5I	GGATG	2 cut(s)	169, 265
BstFNI	CGCG	1 cut(s)	245
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	3 cut(s)	46, 130, 295
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	320, 393
BtsCI	GGATG	2 cut(s)	169, 265
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	9 cut(s)	101, 127, 135, 217, 225, 320, 334, 371, 393
CviKI_1	RGCY	9 cut(s)	101, 127, 135, 217, 225, 320, 334, 371, 393
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	5 cut(s)	22, 102, 213, 221, 375
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	320
Eco24I	GRGCYC	2 cut(s)	129, 219
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	2 cut(s)	129, 219
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	16
FaiI	YATR	4 cut(s)	14, 193, 197, 312
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	176, 252
FriOI	GRGCYC	2 cut(s)	129, 219
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	320, 393
HgaI	GACGC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	57, 262
Hpy166II	GTNNAC	2 cut(s)	109, 295
Hpy188I	TCNGA	2 cut(s)	214, 420
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	2 cut(s)	109, 295
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	48, 77, 120, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	5 cut(s)	22, 102, 213, 221, 375
Hsp92II	CATG	1 cut(s)	16
LpnPI	CCDG	8 cut(s)	34, 58, 122, 149, 302, 334, 348, 368
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	4 cut(s)	64, 154, 196, 333
MaeIII	GTNAC	1 cut(s)	378
MboII	GAAGA	4 cut(s)	38, 350, 353, 422
MhlI	GDGCHC	2 cut(s)	129, 219
MluCI	AATT	5 cut(s)	40, 78, 170, 260, 395
MnlI	CCTC	6 cut(s)	24, 97, 230, 288, 418, 418
MseI	TTAA	3 cut(s)	39, 96, 159
MspCI	CTTAAG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	39, 96, 159
SatI	GCNGC	1 cut(s)	372
Sau96I	GGNCC	1 cut(s)	151
SbfI	CCTGCAGG	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	137
SdaI	CCTGCAGG	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	129, 219
SetI	ASST	8 cut(s)	23, 35, 70, 108, 129, 227, 252, 429
SfaNI	GCATC	4 cut(s)	64, 154, 196, 333
SfcI	CTRYAG	3 cut(s)	46, 130, 295
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse8387I	CCTGCAGG	1 cut(s)	50
Sse9I	AATT	5 cut(s)	40, 78, 170, 260, 395
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	9, 237
TasI	AATT	5 cut(s)	40, 78, 170, 260, 395
Tru1I	TTAA	3 cut(s)	39, 96, 159
Tru9I	TTAA	3 cut(s)	39, 96, 159
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	3 cut(s)	135, 254, 388
TspGWI	ACGGA	2 cut(s)	223, 280
TspRI	CASTG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.