Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015027.1

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2123

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015027.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggcaatcaacatcgcaaccttagaagagaggtacattaattcctgcaggaagcactgtgtttcacctaatgatgcaattctctctgttctgtttaaggatgctgagttcccaccacttcttgatttatgtatggaacttgatgcttctgaggttgaagcagttgacatacgcaatgaatcattgcatgttttgaatggaaaatatgcgctgttgttgctgcgtgctatcaatcaaaagcttcgagttgttgatctccaagatttggcacttggaaaggatttcttgagggatctatcacagagaggtttgacatgccaagttttaaacttgagatcttcacattttcggaagctcaatatgatgggagagttcatgcggatacacaccctcaaccttgactttagtacttcgctcactagttttcaggaggattgtttttcttgcatgcccaatctaatgtgcctttctctgtgcgagacaagaattttaaatctctggacaaccattgctgcactttctaaactcccttctttggttgaacttcggtttcagcattggtcatgctgcaatgatgttgggccttattctgcatcacctagtcggaagtcacatcacaaaacttattcaaatcagcgaaataatggtagaacatcatccattaatattggggaactaacagaccagtactcaagcacagaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

235

Amino Acids

26.72

Weight (kDa)

6.17

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	486
AfaI	GTAC	3 cut(s)	35, 409, 689
AfiI	CCNNNNNNNGG	2 cut(s)	265, 535
AgsI	TTSAA	4 cut(s)	158, 196, 542, 630
AhlI	ACTAGT	1 cut(s)	419
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	2 cut(s)	241, 355
AluI	AGCT	2 cut(s)	241, 355
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	1 cut(s)	581
ApeKI	GCWGC	3 cut(s)	220, 512, 567
ApoI	RAATTY	1 cut(s)	486
AseI	ATTAAT	2 cut(s)	39, 663
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	57, 588
BbvI	GCAGC	3 cut(s)	207, 499, 554
BccI	CCATC	1 cut(s)	358
BciVI	GTATCC	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	473
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	2 cut(s)	420, 600
BfmI	CTRYAG	1 cut(s)	46
BfuI	GTATCC	1 cut(s)	375
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	3 cut(s)	221, 513, 568
BlsI	GCNGC	3 cut(s)	222, 514, 569
BmcAI	AGTACT	2 cut(s)	409, 689
BmgT120I	GGNCC	1 cut(s)	581
BmsI	GCATC	4 cut(s)	64, 91, 133, 602
BpuEI	CTTGAG	3 cut(s)	307, 352, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 535
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	4 cut(s)	181, 182, 507, 577
BseGI	GGATG	2 cut(s)	106, 656
BseLI	CCNNNNNNNGG	2 cut(s)	265, 535
BseMI	GCAATG	4 cut(s)	181, 182, 507, 577
BseMII	CTCAG	2 cut(s)	96, 141
BseNI	ACTGG	1 cut(s)	685
BseXI	GCAGC	3 cut(s)	207, 499, 554
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	583
BslI	CCNNNNNNNGG	2 cut(s)	265, 535
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	253, 292, 335
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	1 cut(s)	583
BspCNI	CTCAG	2 cut(s)	97, 142
BspMAI	CTGCAG	1 cut(s)	50
BspPI	GGATC	1 cut(s)	300
BsrDI	GCAATG	4 cut(s)	181, 182, 507, 577
BsrI	ACTGG	1 cut(s)	685
BssMI	GATC	3 cut(s)	253, 292, 335
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	2 cut(s)	21, 696
BstC8I	GCNNGC	2 cut(s)	225, 449
BstDEI	CTNAG	3 cut(s)	22, 105, 150
BstF5I	GGATG	2 cut(s)	106, 656
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	3 cut(s)	256, 295, 338
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	3 cut(s)	253, 292, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	3 cut(s)	191, 318, 451
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	3 cut(s)	207, 499, 554
BstX2I	RGATCY	2 cut(s)	292, 335
BstYI	RGATCY	2 cut(s)	292, 335
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	106, 656
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	225, 449
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	581
Csp6I	GTAC	3 cut(s)	34, 408, 688
CviAII	CATG	5 cut(s)	188, 315, 376, 448, 564
CviJI	RGCY	3 cut(s)	241, 355, 583
CviKI_1	RGCY	3 cut(s)	241, 355, 583
CviQI	GTAC	3 cut(s)	34, 408, 688
DdeI	CTNAG	3 cut(s)	22, 105, 150
DpnI	GATC	3 cut(s)	255, 294, 337
DpnII	GATC	3 cut(s)	253, 292, 335
DraI	TTTAAA	2 cut(s)	327, 492
Eam1104I	CTCTTC	2 cut(s)	21, 696
EarI	CTCTTC	2 cut(s)	21, 696
FaeI	CATG	5 cut(s)	191, 318, 379, 451, 567
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	5 cut(s)	187, 314, 375, 447, 563
Fnu4HI	GCNGC	3 cut(s)	221, 513, 568
FokI	GGATG	2 cut(s)	113, 643
Fsp4HI	GCNGC	3 cut(s)	221, 513, 568
FspBI	CTAG	2 cut(s)	420, 600
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	3 cut(s)	221, 513, 568
HaeIII	GGCC	1 cut(s)	583
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	5 cut(s)	191, 318, 379, 451, 567
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	1 cut(s)	179
HphI	GGTGA	2 cut(s)	57, 588
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	151, 351, 606
Hpy188III	TCNNGA	4 cut(s)	122, 286, 428, 499
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	540
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	7 cut(s)	48, 77, 187, 447, 515, 570, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	3 cut(s)	22, 105, 150
Hsp92II	CATG	5 cut(s)	191, 318, 379, 451, 567
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	253, 292, 335
LpnPI	CCDG	5 cut(s)	34, 58, 413, 484, 698
Lsp1109I	GCAGC	3 cut(s)	207, 499, 554
LweI	GCATC	4 cut(s)	64, 91, 133, 602
MaeI	CTAG	2 cut(s)	420, 600
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	3 cut(s)	255, 294, 337
MboI	GATC	3 cut(s)	253, 292, 335
MboII	GAAGA	2 cut(s)	38, 330
MflI	RGATCY	2 cut(s)	292, 335
MluCI	AATT	3 cut(s)	40, 78, 486
MmeI	TCCRAC	1 cut(s)	584
MnlI	CCTC	6 cut(s)	24, 145, 282, 299, 401, 424
MseI	TTAA	5 cut(s)	39, 96, 326, 491, 663
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	3 cut(s)	253, 292, 335
NlaIII	CATG	5 cut(s)	191, 318, 379, 451, 567
NmuCI	GTSAC	1 cut(s)	609
NspI	RCATGY	3 cut(s)	191, 318, 451
PaeI	GCATGC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	3 cut(s)	222, 514, 569
PshBI	ATTAAT	2 cut(s)	39, 663
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	292, 335
RsaI	GTAC	3 cut(s)	35, 409, 689
RsaNI	GTAC	3 cut(s)	34, 408, 688
SaqAI	TTAA	5 cut(s)	39, 96, 326, 491, 663
SatI	GCNGC	3 cut(s)	221, 513, 568
Sau3AI	GATC	3 cut(s)	253, 292, 335
Sau96I	GGNCC	1 cut(s)	581
SbfI	CCTGCAGG	1 cut(s)	50
ScaI	AGTACT	2 cut(s)	409, 689
SdaI	CCTGCAGG	1 cut(s)	50
SetI	ASST	9 cut(s)	23, 35, 70, 156, 243, 310, 357, 399, 601
SfaNI	GCATC	4 cut(s)	64, 91, 133, 602
SfcI	CTRYAG	1 cut(s)	46
SmlI	CTYRAG	3 cut(s)	286, 331, 691
SmoI	CTYRAG	3 cut(s)	286, 331, 691
SpeI	ACTAGT	1 cut(s)	419
SphI	GCATGC	1 cut(s)	451
Sse8387I	CCTGCAGG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	40, 78, 486
SsiI	CCGC	1 cut(s)	379
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	2 cut(s)	420, 600
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	244
TasI	AATT	3 cut(s)	40, 78, 486
TatI	WGTACW	2 cut(s)	407, 687
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	5 cut(s)	39, 96, 326, 491, 663
Tru9I	TTAA	5 cut(s)	39, 96, 326, 491, 663
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	609
TseI	GCWGC	3 cut(s)	220, 512, 567
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	2 cut(s)	192, 364
TspRI	CASTG	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	265
VspI	ATTAAT	2 cut(s)	39, 663
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	3 cut(s)	191, 318, 451
XspI	CTAG	2 cut(s)	420, 600
ZrmI	AGTACT	2 cut(s)	409, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.