Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016456

Physical Location & Seq

Genomic Coordinates Forward (+)

9655204 .. 9658613

Gene Structure 3410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG060900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTGGGTACATTATTCCTGCAGGAAGCACTGTGTTTCACCTAATGATGCAATTCTCTCTGTTCTGTTTAAGGCTGAGGTAAAAGAGTCTTGCAATGAGCTCTGTATCCTGGAGATTTCATTGGACCATCTTAAGGATGCTGAATTCCCACCACTTCTTGATTTATGTATGGAACTTGATGCTTCTGAGGTTGAAGCAGTTGACATATGCAATGAATCATTGCATGATTTCTTGAGGGATCTTTCACAGAGAGGTTTGACATGCCAAGTTTTAAACTTGAGATCTTCTCATTTTCGGAAGCTCAATATGATGGGAGAGTTCCTGCGGATACACACCCTCAACCTTGACTTTAGTACTTCACTCACTAGTTTCCAGGAGGATTGTTTTTCTTGCATGCCCAATCTAATGTGCCTGTCTCTGTGCGAGACAAGAATTTTAAATCTTTGGACAACCATTGTTGTGCTTTCTAAACTCCCTTCTTTGGTTGAACTTCGGTTTCAGCATTGGTCATGCTGCAATGATGTTGGGCCTTATTCTGCATCATCTAGTGGGAAGTCACATCACAAAACTTATTCAAATCAGCGAAATAATGGTAGAGCATCATCCATTAATATTGGGGAACTAACAGACCAGTACTCAAGCACAGAAGAGGTGCTCAGGAATATGTTTTTGCTTAATAATGTGGTTATAAATGATGATGAAAGTAGGGCTGAGGATTCAGATGATAGCGAATTAGACTTTTCAAGTCCCCGGCAAGAATATGGTTCTGTGGAGCATTTGTCAAATGTTTTTTCTGGAGGGAACAGACAGATCAATCAATTGAATGAGGATTCTCTTAATAACTTTCAGAATCAAAATGAGGCAGAGCCTTTAGCTGGTCCTTCCTCAAAGTATATTGGAGACATTTCAGTGAAGTATATTTTTTATCATGCTTCGCCAATATGTTTTGAGAAATATTATAGACAGTACATGATAGCCTCATTACCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

330

Amino Acids

37.65

Weight (kDa)

4.97

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	7 - 71	9.7e-14	DWD hypersensitive to UV-B 1, N-terminal
DHU1_N	PF20919	76 - 330	3.3e-40	DWD hypersensitive to UV-B 1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0254281 RchiOBHm_Chr6g0254361
rosa_laevigata	RLG00000014925
rosa_multiflora	Rmu_co8084018.1_g000001 Rmu_sc0003666.1_g000005 Rmu_sc0006565.1_g000003 Rmu_sc0007138.1_g000007 Rmu_sc0007138.1_g000008 Rmu_sc0007138.1_g000011 Rmu_sc0015027.1_g000001
rosa_roxburghii	Rroxscaffold_7G00210900
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh6AG068000 Rh6BG060900
rosa_wichuraiana	Rw6G006050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	143, 432
AfaI	GTAC	4 cut(s)	9, 355, 635, 968
AfiI	CCNNNNNNNGG	3 cut(s)	133, 481, 875
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	5 cut(s)	194, 488, 576, 744, 823
AhlI	ACTAGT	1 cut(s)	365
AjnI	CCWGG	2 cut(s)	108, 372
AluBI	AGCT	3 cut(s)	100, 301, 875
AluI	AGCT	3 cut(s)	100, 301, 875
Alw21I	GWGCWC	2 cut(s)	102, 657
Alw26I	GTCTC	3 cut(s)	419, 420, 894
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	513
ApoI	RAATTY	2 cut(s)	143, 432
AseI	ATTAAT	1 cut(s)	609
AspS9I	GGNCC	3 cut(s)	124, 527, 878
AsuC2I	CCSGG	1 cut(s)	751
AsuHPI	GGTGA	1 cut(s)	30
AvaII	GGWCC	2 cut(s)	124, 878
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	2 cut(s)	102, 657
BbvCI	CCTCAGC	2 cut(s)	75, 711
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	2 cut(s)	135, 304
BciT130I	CCWGG	2 cut(s)	110, 374
BciVI	GTATCC	2 cut(s)	116, 321
BcnI	CCSGG	1 cut(s)	751
BcoDI	GTCTC	3 cut(s)	419, 420, 894
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	2 cut(s)	366, 546
BfmI	CTRYAG	1 cut(s)	19
BfrI	CTTAAG	1 cut(s)	131
BfuI	GTATCC	2 cut(s)	116, 321
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	515
BmcAI	AGTACT	2 cut(s)	355, 635
Bme1390I	CCNGG	3 cut(s)	110, 374, 751
Bme18I	GGWCC	2 cut(s)	124, 878
BmgT120I	GGNCC	3 cut(s)	124, 527, 878
BmrFI	CCNGG	3 cut(s)	110, 374, 751
BmsI	GCATC	5 cut(s)	37, 127, 169, 548, 608
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpmI	CTGGAG	2 cut(s)	131, 816
Bpu10I	CCTNAGC	3 cut(s)	75, 656, 711
BpuEI	CTTGAG	3 cut(s)	253, 298, 622
BpuMI	CCSGG	1 cut(s)	751
BsaJI	CCNNGG	1 cut(s)	749
BsaXI	ACNNNNNCTCC	2 cut(s)	764, 794
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 481, 875
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	4 cut(s)	100, 217, 218, 523
BseBI	CCWGG	2 cut(s)	110, 374
BseDI	CCNNGG	1 cut(s)	749
BseGI	GGATG	2 cut(s)	142, 602
BseLI	CCNNNNNNNGG	3 cut(s)	133, 481, 875
BseMI	GCAATG	4 cut(s)	100, 217, 218, 523
BseMII	CTCAG	4 cut(s)	66, 177, 670, 702
BseNI	ACTGG	1 cut(s)	631
BseXI	GCAGC	1 cut(s)	500
BshFI	GGCC	1 cut(s)	529
BsiHKAI	GWGCWC	2 cut(s)	102, 657
BsiSI	CCGG	1 cut(s)	751
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	3 cut(s)	133, 481, 875
BsmAI	GTCTC	3 cut(s)	419, 420, 894
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	102, 657
Bsp143I	GATC	3 cut(s)	238, 281, 810
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	4 cut(s)	67, 178, 669, 703
BspMAI	CTGCAG	1 cut(s)	23
BspPI	GGATC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	131
BsrDI	GCAATG	4 cut(s)	100, 217, 218, 523
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	1 cut(s)	749
BssMI	GATC	3 cut(s)	238, 281, 810
Bst2UI	CCWGG	2 cut(s)	110, 374
Bst4CI	ACNGT	2 cut(s)	32, 966
Bst6I	CTCTTC	1 cut(s)	642
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	4 cut(s)	75, 186, 656, 711
BstF5I	GGATG	2 cut(s)	142, 602
BstKTI	GATC	3 cut(s)	241, 284, 813
BstMAI	GTCTC	3 cut(s)	419, 420, 894
BstMBI	GATC	3 cut(s)	238, 281, 810
BstNI	CCWGG	2 cut(s)	110, 374
BstNSI	RCATGY	2 cut(s)	264, 397
BstSCI	CCNGG	3 cut(s)	108, 372, 749
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	238, 281
BstYI	RGATCY	2 cut(s)	238, 281
BsuI	GTATCC	2 cut(s)	116, 321
BsuRI	GGCC	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	142, 602
BtsIMutI	CAGTG	2 cut(s)	28, 915
Cac8I	GCNNGC	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	124, 527, 878
Csp6I	GTAC	4 cut(s)	8, 354, 634, 967
CviAII	CATG	6 cut(s)	224, 261, 394, 510, 929, 970
CviJI	RGCY	8 cut(s)	74, 100, 301, 529, 710, 868, 875, 977
CviKI_1	RGCY	8 cut(s)	74, 100, 301, 529, 710, 868, 875, 977
CviQI	GTAC	4 cut(s)	8, 354, 634, 967
DdeI	CTNAG	4 cut(s)	75, 186, 656, 711
DpnI	GATC	3 cut(s)	240, 283, 812
DpnII	GATC	3 cut(s)	238, 281, 810
DraI	TTTAAA	2 cut(s)	273, 438
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	124, 878
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	108, 372
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	6 cut(s)	227, 264, 397, 513, 932, 973
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	6 cut(s)	223, 260, 393, 509, 928, 969
FauNDI	CATATG	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	514
FokI	GGATG	2 cut(s)	149, 589
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	514
FspBI	CTAG	2 cut(s)	366, 546
GluI	GCNGC	1 cut(s)	514
GsuI	CTGGAG	2 cut(s)	131, 816
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	1 cut(s)	751
Hin1II	CATG	6 cut(s)	227, 264, 397, 513, 932, 973
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	5 cut(s)	86, 215, 716, 830, 850
HpaII	CCGG	1 cut(s)	751
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	4 cut(s)	187, 297, 721, 849
Hpy188III	TCNNGA	4 cut(s)	158, 232, 658, 795
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	486, 891
HpyCH4III	ACNGT	2 cut(s)	32, 966
HpyCH4V	TGCA	8 cut(s)	21, 50, 93, 210, 223, 393, 516, 539
HpyF3I	CTNAG	4 cut(s)	75, 186, 656, 711
Hsp92II	CATG	6 cut(s)	227, 264, 397, 513, 932, 973
Kzo9I	GATC	3 cut(s)	238, 281, 810
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	5 cut(s)	37, 127, 169, 548, 608
MaeI	CTAG	2 cut(s)	366, 546
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	3 cut(s)	240, 283, 812
MboI	GATC	3 cut(s)	238, 281, 810
MboII	GAAGA	2 cut(s)	276, 659
MfeI	CAATTG	1 cut(s)	818
MflI	RGATCY	2 cut(s)	238, 281
MhlI	GDGCHC	2 cut(s)	102, 657
MluCI	AATT	5 cut(s)	51, 143, 432, 731, 818
MlyI	GAGTC	1 cut(s)	95
MseI	TTAA	7 cut(s)	69, 132, 272, 437, 609, 675, 837
MslI	CAYNNNNRTG	2 cut(s)	458, 908
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	751
MspR9I	CCNGG	3 cut(s)	110, 374, 751
MunI	CAATTG	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	110, 374
NciI	CCSGG	1 cut(s)	751
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	3 cut(s)	238, 281, 810
NlaIII	CATG	6 cut(s)	227, 264, 397, 513, 932, 973
NmuCI	GTSAC	1 cut(s)	555
NspI	RCATGY	2 cut(s)	264, 397
PaeI	GCATGC	1 cut(s)	397
PfeI	GAWTC	4 cut(s)	215, 716, 830, 850
PfoI	TCCNGGA	2 cut(s)	108, 372
PkrI	GCNGC	1 cut(s)	515
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PshBI	ATTAAT	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	108, 372
PspGI	CCWGG	2 cut(s)	108, 372
PspPI	GGNCC	3 cut(s)	124, 527, 878
PstI	CTGCAG	1 cut(s)	23
PsuI	RGATCY	2 cut(s)	238, 281
RsaI	GTAC	4 cut(s)	9, 355, 635, 968
RsaNI	GTAC	4 cut(s)	8, 354, 634, 967
RseI	CAYNNNNRTG	2 cut(s)	458, 908
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	7 cut(s)	69, 132, 272, 437, 609, 675, 837
SatI	GCNGC	1 cut(s)	514
Sau3AI	GATC	3 cut(s)	238, 281, 810
Sau96I	GGNCC	3 cut(s)	124, 527, 878
SbfI	CCTGCAGG	1 cut(s)	23
ScaI	AGTACT	2 cut(s)	355, 635
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	110, 374, 751
SdaI	CCTGCAGG	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	102, 657
SfaNI	GCATC	5 cut(s)	37, 127, 169, 548, 608
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	2 cut(s)	124, 878
SmiMI	CAYNNNNRTG	2 cut(s)	458, 908
SmlI	CTYRAG	4 cut(s)	131, 232, 277, 637
SmoI	CTYRAG	4 cut(s)	131, 232, 277, 637
SpeI	ACTAGT	1 cut(s)	365
SphI	GCATGC	1 cut(s)	397
Sse8387I	CCTGCAGG	1 cut(s)	23
Sse9I	AATT	5 cut(s)	51, 143, 432, 731, 818
SsiI	CCGC	1 cut(s)	325
SspI	AATATT	2 cut(s)	613, 956
SspMI	CTAG	2 cut(s)	366, 546
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	108, 372, 749
TaaI	ACNGT	2 cut(s)	32, 966
TasI	AATT	5 cut(s)	51, 143, 432, 731, 818
TatI	WGTACW	3 cut(s)	353, 633, 966
TfiI	GAWTC	4 cut(s)	215, 716, 830, 850
Tru1I	TTAA	7 cut(s)	69, 132, 272, 437, 609, 675, 837
Tru9I	TTAA	7 cut(s)	69, 132, 272, 437, 609, 675, 837
TscAI	CASTG	2 cut(s)	35, 915
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	1 cut(s)	513
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	3 cut(s)	108, 228, 714
TspRI	CASTG	2 cut(s)	35, 915
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	124, 878
VspI	ATTAAT	1 cut(s)	609
XapI	RAATTY	2 cut(s)	143, 432
XceI	RCATGY	2 cut(s)	264, 397
XspI	CTAG	2 cut(s)	366, 546
ZrmI	AGTACT	2 cut(s)	355, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.