Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007485

Physical Location & Seq

Genomic Coordinates Forward (+)

17223468 .. 17224166

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGAGCTTTACTTCCCCGCCTAGCAATGCAGGCTTCAATAGCCGAGTCCCGTCAGTTGCATGAGGCCAAGGCGGCCATAGGGGTTGATGAGCTTGGAACCTACCTAAGAACCTTTGGATATCTTATGAAGGACTCCAATGATAAGCAGCAGCAGCAGCAGCTCTTGGAATCTGCACTAAAGATGTACCAGAAAACCTACCACTTAAATGTTACTGGAAAGCTCAATTCCGAAACAAAGGAACTGATAAACACTCCACGACGTGGACTGCCTGATCATAATCTCATCAATGGTAGTGTTCAAATGGGTTCCTATCAAGCCTTCTTTAATCTTGGACCTACAAAATGGCCACCTACAATGTACCATCTCCCATACAGAATCTCTGCCAGAGATGAAACCCCAATTGGGAACGACGCTTTGGCTCAAGCATGTGCTCAGGCATTCGGATTATGGGCCGGTGTTTCCAACTTTACATTCACAAGCGTTGGACTAGACGCCCCCCATCAACTCGACATTAGCTTTCGTCGGGGTCAGCATCGACATGGGAAACCATTTGATGGCATATTAAGGCATGCATTCTACCCCATGGCTGGACTTATGCATTTGGATGCAGATGAGAATTGGAGTTTGACATGGCCAAAATATGACCAATACGACTTAGTCGAGTATACCAGTACCCTTTGTTGTTCTTCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

PG_binding_1 Peptidase_M10

Protein Analysis

232

Amino Acids

26.13

Weight (kDa)

6.75

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	29 - 81	1.1e-07	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	116 - 220	4.5e-16	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007485)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07981 FvH4_3g33581
malus_domestica	MD09G1072500.v1.1
prunus_persica	Prupe.3G250900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262451 RchiOBHm_Chr6g0262461
rosa_laevigata	RLG00000014425 RLG00000014426 RLG00000021518
rosa_multiflora	Rmu_sc0010005.1_g000001 Rmu_sc0020968.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434450 Rroxscaffold_7G00205250
rosa_rugosa	Rorug02G0513400
rosa_samantha	Rh2BG592900 Rh6AG118500 Rh6AG118600 Rh6BG112300 Rh6BG112500 Rh6CG110500 Rh6CG110600 Rh6DG100100 Rh6DG100300
rosa_wichuraiana	Rw0G008390 Rw6G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	263, 557
AccI	GTMKAC	1 cut(s)	668
AciI	CCGC	2 cut(s)	19, 74
AcoI	YGGCCR	3 cut(s)	75, 347, 635
AcyI	GRCGYC	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	3 cut(s)	188, 362, 676
AfiI	CCNNNNNNNGG	4 cut(s)	263, 405, 557, 590
AgsI	TTSAA	2 cut(s)	39, 302
AjiI	CACGTC	1 cut(s)	263
AjuI	GAANNNNNNNTTGG	6 cut(s)	387, 401, 419, 433, 458, 490
AluBI	AGCT	5 cut(s)	8, 94, 163, 223, 519
AluI	AGCT	5 cut(s)	8, 94, 163, 223, 519
Alw21I	GWGCWC	1 cut(s)	436
AoxI	GGCC	5 cut(s)	66, 75, 347, 453, 635
ApeKI	GCWGC	5 cut(s)	148, 151, 154, 157, 160
AspS9I	GGNCC	2 cut(s)	335, 453
AvaII	GGWCC	1 cut(s)	335
BalI	TGGCCA	2 cut(s)	349, 637
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	5 cut(s)	160, 163, 166, 169, 172
BccI	CCATC	3 cut(s)	372, 510, 551
BclI	TGATCA	1 cut(s)	274
BfaI	CTAG	2 cut(s)	23, 491
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
BlsI	GCNGC	6 cut(s)	76, 150, 153, 156, 159, 162
Bme18I	GGWCC	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	335, 453
BmiI	GGNNCC	2 cut(s)	100, 310
BmsI	GCATC	2 cut(s)	544, 598
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	69, 585
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 405, 557, 590
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	220, 672
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	69, 585
BseGI	GGATG	1 cut(s)	613
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	4 cut(s)	263, 405, 557, 590
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	2 cut(s)	220, 672
BseXI	GCAGC	5 cut(s)	160, 163, 166, 169, 172
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	5 cut(s)	68, 77, 349, 455, 637
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	4 cut(s)	263, 405, 557, 590
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	2 cut(s)	440, 575
BsnI	GGCC	5 cut(s)	68, 77, 349, 455, 637
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	2 cut(s)	19, 74
BspANI	GGCC	5 cut(s)	68, 77, 349, 455, 637
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	100, 310
BsrDI	GCAATG	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	220, 672
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	2 cut(s)	69, 585
BssMI	GATC	1 cut(s)	274
BssNAI	GTATAC	1 cut(s)	669
BssNI	GRCGYC	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	69, 585
Bst1107I	GTATAC	1 cut(s)	669
BstACI	GRCGYC	1 cut(s)	495
BstC8I	GCNNGC	2 cut(s)	33, 573
BstDEI	CTNAG	4 cut(s)	107, 435, 658, 696
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	613
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 41, 74, 154, 157, 160
BstNSI	RCATGY	2 cut(s)	432, 575
BstV1I	GCAGC	5 cut(s)	160, 163, 166, 169, 172
BstZ17I	GTATAC	1 cut(s)	669
BsuRI	GGCC	5 cut(s)	68, 77, 349, 455, 637
BtgI	CCRYGG	1 cut(s)	585
BtrI	CACGTC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	33, 573
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	335, 453
CseI	GACGC	2 cut(s)	422, 503
Csp6I	GTAC	3 cut(s)	187, 361, 675
CviAII	CATG	6 cut(s)	62, 429, 542, 572, 586, 633
CviQI	GTAC	3 cut(s)	187, 361, 675
DdeI	CTNAG	4 cut(s)	107, 435, 658, 696
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraIII	CACNNNGTG	1 cut(s)	263
EaeI	YGGCCR	3 cut(s)	75, 347, 635
Eco130I	CCWWGG	2 cut(s)	69, 585
Eco32I	GATATC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	335
EcoRV	GATATC	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	69, 585
EcoT22I	ATGCAT	2 cut(s)	577, 603
ErhI	CCWWGG	2 cut(s)	69, 585
FaeI	CATG	6 cut(s)	65, 432, 545, 575, 589, 636
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	6 cut(s)	61, 428, 541, 571, 585, 632
FauI	CCCGC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
FspBI	CTAG	2 cut(s)	23, 491
GluI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
HaeIII	GGCC	5 cut(s)	68, 77, 349, 455, 637
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	2 cut(s)	422, 503
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	6 cut(s)	65, 432, 545, 575, 589, 636
HinfI	GANTC	4 cut(s)	47, 134, 170, 378
HpaII	CCGG	1 cut(s)	456
Hpy166II	GTNNAC	2 cut(s)	266, 669
Hpy188I	TCNGA	2 cut(s)	232, 446
Hpy8I	GTNNAC	2 cut(s)	266, 669
Hpy99I	CGWCG	3 cut(s)	264, 416, 528
HpyAV	CCTTC	2 cut(s)	124, 331
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	6 cut(s)	31, 61, 176, 575, 601, 611
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 41, 74, 154, 157, 160
HpyF3I	CTNAG	4 cut(s)	107, 435, 658, 696
HpySE526I	ACGT	1 cut(s)	262
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	6 cut(s)	65, 432, 545, 575, 589, 636
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	9 cut(s)	17, 201, 203, 285, 400, 422, 469, 576, 685
Lsp1109I	GCAGC	5 cut(s)	160, 163, 166, 169, 172
LweI	GCATC	2 cut(s)	544, 598
MaeI	CTAG	2 cut(s)	23, 491
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	681
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	2 cut(s)	349, 637
MluCI	AATT	3 cut(s)	226, 402, 619
MluNI	TGGCCA	2 cut(s)	349, 637
MlyI	GAGTC	2 cut(s)	56, 128
MmeI	TCCRAC	2 cut(s)	466, 489
MnlI	CCTC	1 cut(s)	58
Mox20I	TGGCCA	2 cut(s)	349, 637
Mph1103I	ATGCAT	2 cut(s)	577, 603
MscI	TGGCCA	2 cut(s)	349, 637
MseI	TTAA	3 cut(s)	206, 327, 566
MslI	CAYNNNNRTG	3 cut(s)	207, 540, 606
Msp20I	TGGCCA	2 cut(s)	349, 637
MspI	CCGG	1 cut(s)	456
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	2 cut(s)	440, 575
MwoI	GCNNNNNNNGC	6 cut(s)	32, 41, 74, 154, 157, 160
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	6 cut(s)	65, 432, 545, 575, 589, 636
NlaIV	GGNNCC	2 cut(s)	100, 310
NmeAIII	GCCGAG	1 cut(s)	70
NsiI	ATGCAT	2 cut(s)	577, 603
NspI	RCATGY	2 cut(s)	432, 575
PaeI	GCATGC	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PctI	GAATGC	2 cut(s)	440, 575
PfeI	GAWTC	2 cut(s)	170, 378
PflFI	GACNNNGTC	1 cut(s)	659
PflMI	CCANNNNNTGG	2 cut(s)	263, 557
PkrI	GCNGC	6 cut(s)	76, 150, 153, 156, 159, 162
PleI	GAGTC	2 cut(s)	55, 128
PpsI	GAGTC	2 cut(s)	55, 128
PspN4I	GGNNCC	2 cut(s)	100, 310
PspPI	GGNCC	2 cut(s)	335, 453
PsyI	GACNNNGTC	1 cut(s)	659
RsaI	GTAC	3 cut(s)	188, 362, 676
RsaNI	GTAC	3 cut(s)	187, 361, 675
RseI	CAYNNNNRTG	3 cut(s)	207, 540, 606
SaqAI	TTAA	3 cut(s)	206, 327, 566
SatI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	2 cut(s)	335, 453
SchI	GAGTC	2 cut(s)	56, 128
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	2 cut(s)	544, 598
SfiI	GGCCNNNNNGGCC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	3 cut(s)	207, 540, 606
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SphI	GCATGC	1 cut(s)	575
Sse9I	AATT	3 cut(s)	226, 402, 619
SsiI	CCGC	2 cut(s)	19, 74
SspMI	CTAG	2 cut(s)	23, 491
StyI	CCWWGG	2 cut(s)	69, 585
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	4 cut(s)	510, 538, 663, 692
TasI	AATT	3 cut(s)	226, 402, 619
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	170, 378
Tru1I	TTAA	3 cut(s)	206, 327, 566
Tru9I	TTAA	3 cut(s)	206, 327, 566
TseI	GCWGC	5 cut(s)	148, 151, 154, 157, 160
TspDTI	ATGAA	2 cut(s)	143, 408
Tth111I	GACNNNGTC	1 cut(s)	659
Van91I	CCANNNNNTGG	2 cut(s)	263, 557
VpaK11BI	GGWCC	1 cut(s)	335
XceI	RCATGY	2 cut(s)	432, 575
XmiI	GTMKAC	1 cut(s)	668
XspI	CTAG	2 cut(s)	23, 491
Zsp2I	ATGCAT	2 cut(s)	577, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.