RchiOBHm_Chr6g0262731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011620
Physical Location & Seq
Forward (+)
17517601 .. 17520048
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 723 bp
ATGTCAGATCATTGGAGGGAATTTAGAGTTCGTGGAGAGCTCCAATATCATGATGTGTATGTCATTTTGGAGATACACCATGGTGGTCAGTTTGTCGAAGCTGGTGGTGGAAGGTTTGAATACAATGGAGGTGAAGTTCATTGGGTGGAAATGATTGATCCAGAAAAATTTTCTTGGACAGATTTGAATACTTTTGCTTGGAGATTAGGTTATAGAAAGCCTCCTGTTCATTATTGGTTCAAGTATCATGCAAAACCAATATACTTGCCTATTAGAATTGACAAGGAAGCTGTGGGCATGCTCTCAGATTTACCTAAAGCTAGGAAGGTTGAAGTATATTATGTTGGAGGAGGTGATAGAGATGTGGAAGTTTGTGAGAAGGAGGATCAGATTAAAGATTTTTCAGAGGTGGTTCCACATTTAAAGTTTATGCCTGAGATTATTATGGTACCACTTAAATCTGCTAATGTGGGGAATGATAAGGGGAAGTGGAAAGAGTTGGATATTGAAAACAGTGAGGATGAAGAAGTCTTTGAGCATGATGATGATGACGAAATAGAGAAAGAAGAGGTCGATGACAAGTTCTTTGACAGTGATTATGAATTAAACCCTGAGGATGATGGTGAATCATATGGTGTCGAAGCAGATGATGTTGAGTTCAATGCAGATGTCGATGATATAAATGAGATTGAGGAATGGACTGATATGGGATTTACTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

240

Amino Acids

28.13

Weight (kDa)

4.35

Isoelectric Point (pI)

31.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 21 - 114 3.1e-15 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 448
AclWI GGATC 2 cut(s) 152, 393
AcsI RAATTY 2 cut(s) 20, 167
AfaI GTAC 1 cut(s) 450
AgsI TTSAA 6 cut(s) 119, 187, 241, 332, 509, 661
AleI CACNNNNGTG 1 cut(s) 81
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 4 cut(s) 40, 101, 290, 320
AluI AGCT 4 cut(s) 40, 101, 290, 320
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 2 cut(s) 152, 393
ApoI RAATTY 2 cut(s) 20, 167
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
Asp718I GGTACC 1 cut(s) 448
AsuHPI GGTGA 3 cut(s) 143, 365, 635
AxyI CCTNAGG 1 cut(s) 612
BanI GGYRCC 1 cut(s) 448
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 1 cut(s) 614
BfaI CTAG 1 cut(s) 321
BmiI GGNNCC 2 cut(s) 414, 450
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 4 cut(s) 120, 150, 193, 223
Bse1I ACTGG 1 cut(s) 721
Bse21I CCTNAGG 1 cut(s) 612
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 2 cut(s) 526, 622
BseMII CTCAG 3 cut(s) 318, 426, 603
BseNI ACTGG 1 cut(s) 721
BseRI GAGGAG 1 cut(s) 363
BshNI GGYRCC 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 7, 157, 385
Bsp19I CCATGG 1 cut(s) 79
BspCNI CTCAG 3 cut(s) 317, 427, 604
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 414, 450
BspPI GGATC 2 cut(s) 152, 393
BspT107I GGYRCC 1 cut(s) 448
BsrI ACTGG 1 cut(s) 721
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 3 cut(s) 7, 157, 385
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 515, 593
Bst6I CTCTTC 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 3 cut(s) 304, 435, 612
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 2 cut(s) 526, 622
BstKTI GATC 3 cut(s) 10, 160, 388
BstMBI GATC 3 cut(s) 7, 157, 385
BstNSI RCATGY 1 cut(s) 301
Bsu36I CCTNAGG 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 526, 622
BtsIMutI CAGTG 2 cut(s) 520, 598
Cac8I GCNNGC 1 cut(s) 299
CciI TCATGA 1 cut(s) 49
Csp6I GTAC 1 cut(s) 449
CviAII CATG 5 cut(s) 50, 80, 248, 298, 539
CviJI RGCY 5 cut(s) 40, 101, 220, 290, 320
CviKI_1 RGCY 5 cut(s) 40, 101, 220, 290, 320
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 3 cut(s) 304, 435, 612
DpnI GATC 3 cut(s) 9, 159, 387
DpnII GATC 3 cut(s) 7, 157, 385
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 612
EcoICRI GAGCTC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 5 cut(s) 53, 83, 251, 301, 542
FatI CATG 5 cut(s) 49, 79, 247, 297, 538
FauNDI CATATG 1 cut(s) 631
FokI GGATG 2 cut(s) 533, 629
FriOI GRGCYC 1 cut(s) 42
FspBI CTAG 1 cut(s) 321
Hin1II CATG 5 cut(s) 53, 83, 251, 301, 542
HinfI GANTC 1 cut(s) 626
HphI GGTGA 3 cut(s) 143, 365, 635
Hpy188I TCNGA 4 cut(s) 7, 307, 390, 406
Hpy188III TCNNGA 2 cut(s) 50, 161
HpyAV CCTTC 3 cut(s) 105, 319, 373
HpyCH4III ACNGT 2 cut(s) 515, 593
HpyCH4V TGCA 2 cut(s) 251, 665
HpyF3I CTNAG 3 cut(s) 304, 435, 612
Hsp92II CATG 5 cut(s) 53, 83, 251, 301, 542
KpnI GGTACC 1 cut(s) 452
Kzo9I GATC 3 cut(s) 7, 157, 385
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 6 cut(s) 87, 174, 237, 447, 624, 702
MaeI CTAG 1 cut(s) 321
MalI GATC 3 cut(s) 9, 159, 387
MboI GATC 3 cut(s) 7, 157, 385
MboII GAAGA 2 cut(s) 536, 578
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 4 cut(s) 20, 167, 276, 602
MmeI TCCRAC 2 cut(s) 325, 480
MseI TTAA 4 cut(s) 393, 422, 456, 605
MslI CAYNNNNRTG 2 cut(s) 81, 543
NcoI CCATGG 1 cut(s) 79
NdeI CATATG 1 cut(s) 631
NdeII GATC 3 cut(s) 7, 157, 385
NlaIII CATG 5 cut(s) 53, 83, 251, 301, 542
NlaIV GGNNCC 2 cut(s) 414, 450
NspI RCATGY 1 cut(s) 301
OliI CACNNNNGTG 1 cut(s) 81
PaeI GCATGC 1 cut(s) 301
PagI TCATGA 1 cut(s) 49
PfeI GAWTC 1 cut(s) 626
Psp124BI GAGCTC 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 414, 450
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
RseI CAYNNNNRTG 2 cut(s) 81, 543
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 4 cut(s) 393, 422, 456, 605
Sau3AI GATC 3 cut(s) 7, 157, 385
SduI GDGCHC 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 81, 543
SphI GCATGC 1 cut(s) 301
Sse9I AATT 4 cut(s) 20, 167, 276, 602
SspMI CTAG 1 cut(s) 321
SstI GAGCTC 1 cut(s) 42
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 515, 593
TaqI TCGA 4 cut(s) 96, 573, 639, 672
TasI AATT 4 cut(s) 20, 167, 276, 602
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 4 cut(s) 393, 422, 456, 605
Tru9I TTAA 4 cut(s) 393, 422, 456, 605
TscAI CASTG 2 cut(s) 520, 598
TspDTI ATGAA 4 cut(s) 128, 218, 537, 615
TspRI CASTG 2 cut(s) 520, 598
XapI RAATTY 2 cut(s) 20, 167
XceI RCATGY 1 cut(s) 301
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.