Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003938

Physical Location & Seq

Genomic Coordinates Reverse (-)

26261641 .. 26272734

Gene Structure 11094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0244100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGAGGCGCGCCAAAACCCATCTCTCTCTCTCTCAGTCTCTCACTCTCTCTCTCTCTCTGCAACTACCAACTTCAACTATGGCATTCCCTTTATCCTCCGCCACCATCTCTCACAACCTCTCCTTCAATGCCTCCATCGCTCCCTCCACTCGCAGGCTTAGTTTCGGACCAGCCCATTTCATATTCTGCTTCAACAGGATCGACCCACAAAAATTGGGCCGCTCCAGAGTCCATTGCATCTCCAACAAGAATCTATCAGAGGAACTCGAAGACCAACGTAGTACTCTTACCAATTCCTACATGTCAACTAATGGATATAAAAAGAAACTTGAGAGTTTAATTGCTGTGATCCTTGTGGTTGTCCAAATATCCTCTCCGCTTCCTTTGGTTGGTTGGGAGTTTTGGCCTATATCACCTGCGAATGCGGTTCTTTATTCTCCAGACACTAAGGTTCCCAGAACAGGAGAGTTAGCTTTAAGGAGGGCTATACCTGCAAACACAAACATGAAGGCCATGCAGGATTCTCTGGAGGAGATACTTTACTTGCTGAGAATCCCACAGAGAAAGCCTTATGGAACCATGGAGGGGAATGTGAAAAAAGCTCTAAAGATAGCAACAGATGAAAAGGACTCAATTTTGGCAAGTGTACCCACAGACTTGAGGGAGAAGGGTTCCACCTTATATGCATCTCTTATCGATGGAAAGAATGGATTGCAAGTTCTTCTTGGATATATAAAGGATAAGGATGCAGATAAAGTATCTGTGGCCCTTGCCTCTTCACTGGATACTATAGCTGAGCTGGAGTTATTACAGGCTCCAGGCCTGTCATTCTTGTTGCCTGAGCAATACCAGAGATACCCAAGGCTTACAGGGAGAGGAACTGTTGAATTAACCATTGAGAAAGGTGACGGTTCAACATTTTCTGCAGAAGCTGGTGGTGAACCAAGAAAGTCAGCCAGTATTCAGGTTGTTATAGATGGATATTCAGCACCATTAACAGCGGGTAATTTCGCAAAACTGGTAAGTGATGGGGCATACAATGGGGCAAAGCTCAGCTCGACCGACCAAGCTATTCTCTCAGATAGTGGTTTTGACAAGAACAGTGGTTCTAGTGTTCCTTTAGAAATCAAGCCATCTGGGCAATTTGAGCCCTTGTATAGAACAAAATTAGATGTCCAGGACGGGGAATTGCCAGTTCTTCCGCTATCTGTTTATGGATCACTTGCTATGGCACATAGTGAAGACTCTGACGAGTACTCCTCACCATATCAGTTTTTCTTCTATCTTTATGATAAAAGAAATGCTGGCTTGGGAGGATTATCATTTGATGAAGGAGAATTTTCAGTTTTTGGATACACAACAGTTGGGAAAGATATTCTTTCACAGATAAAAACTGGAGATGTGATTCGATCTGCAAAGCTGGTCGAAGGTGAAGATCGTCTAGTGTTGCCAAATGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT

Protein Analysis

487

Amino Acids

53.13

Weight (kDa)

6.08

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYP38_PsbQ-like	PF21329	159 - 268	6.6e-15	Peptidyl-prolyl cis-trans isomerase CYP38-like, PsbQ-like domain
Pro_isomerase	PF00160	320 - 472	2.5e-12	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003938)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15281 FvH4_6g23002
prunus_persica	Prupe.7G011700_v2.0.a1 Prupe.8G060700_v2.0.a1
pyrus_communis	pycom11g23400 pycom11g23410
rosa_chinensis	RchiOBHm_Chr3g0493121 RchiOBHm_Chr4g0416701 RchiOBHm_Chr5g0030191 RchiOBHm_Chr5g0030261 RchiOBHm_Chr5g0030451 RchiOBHm_Chr5g0030531
rosa_laevigata	RLG00000004075 RLG00000009332 RLG00000033223
rosa_roxburghii	Rroxscaffold_1G00012180 Rroxscaffold_3G00221970 Rroxscaffold_5G00352040 Rroxscaffold_5G00352700 Rroxscaffold_5G00366920 Rroxscaffold_6G00401320 Rroxscaffold_7G00214040
rosa_rugosa	Rorug05G0118200 Rorug05G0244100 Rorug05G0431600
rosa_samantha	Rh2AG303900 Rh5BG493400 Rh5CG358400 Rh5CG517400 Rh5DG213900 Rh6BG199100 Rh7DG307600
rosa_wichuraiana	Rw5G019230 Rw6G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	2 cut(s)	424, 499
AccBSI	CCGCTC	1 cut(s)	222
AccII	CGCG	1 cut(s)	9
AciI	CCGC	6 cut(s)	99, 220, 377, 425, 1001, 1202
AclWI	GGATC	3 cut(s)	206, 343, 1225
AcsI	RAATTY	1 cut(s)	1337
AdeI	CACNNNGTG	1 cut(s)	1238
AfaI	GTAC	3 cut(s)	283, 648, 1256
AfiI	CCNNNNNNNGG	5 cut(s)	153, 389, 461, 585, 1183
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	5 cut(s)	75, 127, 193, 887, 915
AjnI	CCWGG	2 cut(s)	817, 1176
AloI	GAACNNNNNNTCC	2 cut(s)	702, 734
AluBI	AGCT	9 cut(s)	473, 602, 794, 799, 932, 1051, 1056, 1070, 1420
AluI	AGCT	9 cut(s)	473, 602, 794, 799, 932, 1051, 1056, 1070, 1420
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	3 cut(s)	206, 343, 1225
AlwNI	CAGNNNCTG	1 cut(s)	932
AoxI	GGCC	5 cut(s)	217, 404, 510, 765, 820
ApoI	RAATTY	1 cut(s)	1337
AscI	GGCGCGCC	1 cut(s)	7
AspLEI	GCGC	2 cut(s)	9, 11
AspS9I	GGNCC	3 cut(s)	167, 217, 766
AsuHPI	GGTGA	5 cut(s)	405, 917, 950, 1254, 1442
AvaII	GGWCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	1152
BbsI	GAAGAC	2 cut(s)	276, 1248
BccI	CCATC	7 cut(s)	27, 113, 143, 692, 971, 1022, 1141
BciT130I	CCWGG	2 cut(s)	819, 1178
BciVI	GTATCC	2 cut(s)	778, 1346
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	2 cut(s)	1110, 1442
BfmI	CTRYAG	2 cut(s)	789, 924
BfuAI	ACCTGC	2 cut(s)	424, 499
BfuI	GTATCC	2 cut(s)	778, 1346
BglI	GCCNNNNNGGC	1 cut(s)	1138
BisI	GCNGC	1 cut(s)	220
BlpI	GCTNAGC	2 cut(s)	795, 1052
BlsI	GCNGC	1 cut(s)	221
BmcAI	AGTACT	2 cut(s)	283, 1256
Bme1390I	CCNGG	2 cut(s)	819, 1178
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	3 cut(s)	167, 217, 766
BmiI	GGNNCC	4 cut(s)	453, 577, 673, 816
BmrFI	CCNGG	2 cut(s)	819, 1178
BmsI	GCATC	3 cut(s)	246, 695, 736
BpiI	GAAGAC	2 cut(s)	276, 1248
BplI	GAGNNNNNCTC	2 cut(s)	1244, 1276
BpmI	CTGGAG	6 cut(s)	208, 423, 548, 801, 821, 1416
Bpu10I	CCTNAGC	1 cut(s)	840
Bpu1102I	GCTNAGC	2 cut(s)	795, 1052
BpuEI	CTTGAG	2 cut(s)	350, 679
Bsa29I	ATCGAT	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	579, 860
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 1241, 1271
Bsc4I	CCNNNNNNNGG	5 cut(s)	153, 389, 461, 585, 1183
Bse1I	ACTGG	5 cut(s)	786, 957, 1023, 1193, 1399
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	819, 1178
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	579, 860
BseGI	GGATG	1 cut(s)	751
BseLI	CCNNNNNNNGG	5 cut(s)	153, 389, 461, 585, 1183
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	6 cut(s)	47, 539, 786, 831, 1066, 1092
BseNI	ACTGG	5 cut(s)	786, 957, 1023, 1193, 1399
BsePI	GCGCGC	1 cut(s)	7
BseRI	GAGGAG	2 cut(s)	545, 1249
Bsh1236I	CGCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	1062
BshFI	GGCC	5 cut(s)	219, 406, 512, 767, 822
BshVI	ATCGAT	1 cut(s)	696
BsiEI	CGRYCG	1 cut(s)	1062
BslI	CCNNNNNNNGG	5 cut(s)	153, 389, 461, 585, 1183
BsmAI	GTCTC	1 cut(s)	42
BsmI	GAATGC	2 cut(s)	83, 427
BsnI	GGCC	5 cut(s)	219, 406, 512, 767, 822
Bsp1286I	GDGCHC	1 cut(s)	1152
Bsp143I	GATC	5 cut(s)	198, 348, 1217, 1409, 1435
Bsp1720I	GCTNAGC	2 cut(s)	795, 1052
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	6 cut(s)	99, 220, 377, 425, 1001, 1202
BspANI	GGCC	5 cut(s)	219, 406, 512, 767, 822
BspCNI	CTCAG	6 cut(s)	46, 540, 787, 832, 1065, 1091
BspDI	ATCGAT	1 cut(s)	696
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	4 cut(s)	453, 577, 673, 816
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	2 cut(s)	424, 499
BspPI	GGATC	3 cut(s)	206, 343, 1225
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	5 cut(s)	786, 957, 1023, 1193, 1399
BssECI	CCNNGG	2 cut(s)	579, 860
BssHII	GCGCGC	1 cut(s)	7
BssMI	GATC	5 cut(s)	198, 348, 1217, 1409, 1435
BssT1I	CCWWGG	2 cut(s)	579, 860
Bst2UI	CCWGG	2 cut(s)	819, 1178
Bst4CI	ACNGT	4 cut(s)	883, 911, 1103, 1363
Bst6I	CTCTTC	1 cut(s)	781
BstC8I	GCNNGC	3 cut(s)	9, 155, 1306
BstDEI	CTNAG	8 cut(s)	33, 158, 447, 548, 795, 840, 1052, 1078
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	751
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	9, 11
BstKTI	GATC	5 cut(s)	201, 351, 1220, 1412, 1438
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	5 cut(s)	198, 348, 1217, 1409, 1435
BstMCI	CGRYCG	1 cut(s)	1062
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 491, 1138, 1147
BstNI	CCWGG	2 cut(s)	819, 1178
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	817, 1176
BstSFI	CTRYAG	2 cut(s)	789, 924
BstUI	CGCG	1 cut(s)	9
BstV2I	GAAGAC	2 cut(s)	276, 1248
Bsu15I	ATCGAT	1 cut(s)	696
BsuI	GTATCC	2 cut(s)	778, 1346
BsuRI	GGCC	5 cut(s)	219, 406, 512, 767, 822
BsuTUI	ATCGAT	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	579
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	751
BtsIMutI	CAGTG	2 cut(s)	779, 1108
BveI	ACCTGC	2 cut(s)	424, 499
Cac8I	GCNNGC	3 cut(s)	9, 155, 1306
CaiI	CAGNNNCTG	1 cut(s)	932
CfoI	GCGC	2 cut(s)	9, 11
Cfr13I	GGNCC	3 cut(s)	167, 217, 766
ClaI	ATCGAT	1 cut(s)	696
Csp6I	GTAC	3 cut(s)	282, 647, 1255
CspCI	CAANNNNNGTGG	4 cut(s)	195, 230, 1084, 1119
CviAII	CATG	4 cut(s)	301, 505, 514, 580
CviQI	GTAC	3 cut(s)	282, 647, 1255
DdeI	CTNAG	8 cut(s)	33, 158, 447, 548, 795, 840, 1052, 1078
DpnI	GATC	5 cut(s)	200, 350, 1219, 1411, 1437
DpnII	GATC	5 cut(s)	198, 348, 1217, 1409, 1435
DraIII	CACNNNGTG	1 cut(s)	1238
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	579, 860
Eco147I	AGGCCT	1 cut(s)	822
Eco24I	GRGCYC	1 cut(s)	1152
Eco47I	GGWCC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	817, 1176
EcoT14I	CCWWGG	2 cut(s)	579, 860
EcoT22I	ATGCAT	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	1152
ErhI	CCWWGG	2 cut(s)	579, 860
FaeI	CATG	4 cut(s)	304, 508, 517, 583
FalI	AAGNNNNNCTT	4 cut(s)	708, 740, 1362, 1394
FatI	CATG	4 cut(s)	300, 504, 513, 579
FauI	CCCGC	1 cut(s)	994
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	758
FriOI	GRGCYC	1 cut(s)	1152
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	2 cut(s)	1110, 1442
GlaI	GCGC	2 cut(s)	8, 10
GluI	GCNGC	1 cut(s)	220
GsuI	CTGGAG	6 cut(s)	208, 423, 548, 801, 821, 1416
HaeIII	GGCC	5 cut(s)	219, 406, 512, 767, 822
HhaI	GCGC	2 cut(s)	9, 11
Hin1II	CATG	4 cut(s)	304, 508, 517, 583
Hin6I	GCGC	2 cut(s)	7, 9
HinP1I	GCGC	2 cut(s)	7, 9
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	7 cut(s)	228, 250, 521, 552, 629, 1244, 1405
HphI	GGTGA	5 cut(s)	405, 917, 950, 1254, 1442
Hpy166II	GTNNAC	3 cut(s)	306, 647, 941
Hpy188I	TCNGA	4 cut(s)	167, 259, 1081, 1249
Hpy188III	TCNNGA	3 cut(s)	225, 440, 527
Hpy8I	GTNNAC	3 cut(s)	306, 647, 941
HpyAV	CCTTC	5 cut(s)	133, 502, 661, 1325, 1421
HpyCH4III	ACNGT	4 cut(s)	883, 911, 1103, 1363
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	9 cut(s)	61, 237, 494, 517, 686, 715, 749, 926, 1415
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 491, 1138, 1147
HpyF3I	CTNAG	8 cut(s)	33, 158, 447, 548, 795, 840, 1052, 1078
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	4 cut(s)	304, 508, 517, 583
HspAI	GCGC	2 cut(s)	7, 9
Kzo9I	GATC	5 cut(s)	198, 348, 1217, 1409, 1435
LmnI	GCTCC	3 cut(s)	145, 227, 820
LweI	GCATC	3 cut(s)	246, 695, 736
MaeI	CTAG	2 cut(s)	1110, 1442
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	905
MalI	GATC	5 cut(s)	200, 350, 1219, 1411, 1437
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	5 cut(s)	198, 348, 1217, 1409, 1435
MboII	GAAGA	7 cut(s)	281, 713, 768, 1190, 1253, 1270, 1445
MhlI	GDGCHC	1 cut(s)	1152
MlyI	GAGTC	3 cut(s)	237, 623, 1238
MmeI	TCCRAC	1 cut(s)	267
Mph1103I	ATGCAT	1 cut(s)	688
MseI	TTAA	4 cut(s)	338, 476, 890, 995
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	1001
MspR9I	CCNGG	2 cut(s)	819, 1178
Mva1269I	GAATGC	2 cut(s)	83, 427
MvaI	CCWGG	2 cut(s)	819, 1178
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	4 cut(s)	137, 491, 1138, 1147
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	5 cut(s)	198, 348, 1217, 1409, 1435
NlaIII	CATG	4 cut(s)	304, 508, 517, 583
NlaIV	GGNNCC	4 cut(s)	453, 577, 673, 816
NmuCI	GTSAC	1 cut(s)	905
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	1 cut(s)	304
PalAI	GGCGCGCC	1 cut(s)	7
PaqCI	CACCTGC	1 cut(s)	424
PauI	GCGCGC	1 cut(s)	7
PceI	AGGCCT	1 cut(s)	822
PciI	ACATGT	1 cut(s)	300
PctI	GAATGC	2 cut(s)	83, 427
PfeI	GAWTC	4 cut(s)	250, 521, 552, 1405
PfoI	TCCNGGA	1 cut(s)	1176
PkrI	GCNGC	1 cut(s)	221
PleI	GAGTC	3 cut(s)	236, 623, 1238
PpsI	GAGTC	3 cut(s)	236, 623, 1238
PscI	ACATGT	1 cut(s)	300
Psp6I	CCWGG	2 cut(s)	817, 1176
PspGI	CCWGG	2 cut(s)	817, 1176
PspN4I	GGNNCC	4 cut(s)	453, 577, 673, 816
PspPI	GGNCC	3 cut(s)	167, 217, 766
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	932
PteI	GCGCGC	1 cut(s)	7
RsaI	GTAC	3 cut(s)	283, 648, 1256
RsaNI	GTAC	3 cut(s)	282, 647, 1255
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	4 cut(s)	338, 476, 890, 995
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	5 cut(s)	198, 348, 1217, 1409, 1435
Sau96I	GGNCC	3 cut(s)	167, 217, 766
ScaI	AGTACT	2 cut(s)	283, 1256
SchI	GAGTC	3 cut(s)	237, 623, 1238
ScrFI	CCNGG	2 cut(s)	819, 1178
SduI	GDGCHC	1 cut(s)	1152
SfaNI	GCATC	3 cut(s)	246, 695, 736
SfcI	CTRYAG	2 cut(s)	789, 924
SgsI	GGCGCGCC	1 cut(s)	7
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	329, 658
SmoI	CTYRAG	2 cut(s)	329, 658
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	6 cut(s)	99, 220, 377, 425, 1001, 1202
SspMI	CTAG	2 cut(s)	1110, 1442
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	2 cut(s)	817, 1176
StyI	CCWWGG	2 cut(s)	579, 860
TaaI	ACNGT	4 cut(s)	883, 911, 1103, 1363
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	6 cut(s)	201, 267, 696, 1058, 1408, 1425
TaqII	GACCGA	1 cut(s)	1076
TatI	WGTACW	2 cut(s)	281, 1254
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	4 cut(s)	250, 521, 552, 1405
Tru1I	TTAA	4 cut(s)	338, 476, 890, 995
Tru9I	TTAA	4 cut(s)	338, 476, 890, 995
TscAI	CASTG	2 cut(s)	786, 1108
TseFI	GTSAC	1 cut(s)	905
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	4 cut(s)	169, 521, 636, 1344
TspRI	CASTG	2 cut(s)	786, 1108
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	1337
XceI	RCATGY	1 cut(s)	304
XspI	CTAG	2 cut(s)	1110, 1442
ZrmI	AGTACT	2 cut(s)	283, 1256
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.