Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003938

Physical Location & Seq

Genomic Coordinates Forward (+)

64529097 .. 64536221

Gene Structure 7125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGTCCGGATAATGTGCTTTTGTACGAAAAGAGTTTCATCGGTAGAGAAGATAAACCTACTGTTGCTAATGGCTATCGTCAAGAATGGGCGGGGAAGATGGCTAATGACGTGTCCCGGTATCAAGACATACATGCCAAGGTTGCGACACGAAGACACGCCCAAACGAGACGCCGAAAGGTGACGGAACCCTTCAAGGAGAAATTGACTAAGGAGAGATTTGCTCAAGGAAAGATCCGAGTGAGGTACAATCCCTTTGAGATACAATCTATTCGAGGCACAATGTCTTTGAAGAAAAATTCCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

102

Amino Acids

12.0

Weight (kDa)

10.4

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003938)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15281 FvH4_6g23002
prunus_persica	Prupe.7G011700_v2.0.a1 Prupe.8G060700_v2.0.a1
pyrus_communis	pycom11g23400 pycom11g23410
rosa_chinensis	RchiOBHm_Chr3g0493121 RchiOBHm_Chr4g0416701 RchiOBHm_Chr5g0030191 RchiOBHm_Chr5g0030261 RchiOBHm_Chr5g0030451 RchiOBHm_Chr5g0030531
rosa_laevigata	RLG00000004075 RLG00000009332 RLG00000033223
rosa_roxburghii	Rroxscaffold_1G00012180 Rroxscaffold_3G00221970 Rroxscaffold_5G00352040 Rroxscaffold_5G00352700 Rroxscaffold_5G00366920 Rroxscaffold_6G00401320 Rroxscaffold_7G00214040
rosa_rugosa	Rorug05G0118200 Rorug05G0244100 Rorug05G0431600
rosa_samantha	Rh2AG303900 Rh5BG493400 Rh5CG358400 Rh5CG517400 Rh5DG213900 Rh6BG199100 Rh7DG307600
rosa_wichuraiana	Rw5G019230 Rw6G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	172
AfaI	GTAC	2 cut(s)	26, 248
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	196, 292
AjiI	CACGTC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	160
BccI	CCATC	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	7
BseAI	TCCGGA	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	8, 118
BslFI	GGGAC	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	100
Bsp13I	TCCGGA	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	1 cut(s)	92
BspEI	TCCGGA	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	112
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	25, 247
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	2 cut(s)	75, 104
CviKI_1	RGCY	2 cut(s)	75, 104
CviQI	GTAC	2 cut(s)	25, 247
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	1 cut(s)	137
FaiI	YATR	2 cut(s)	131, 135
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	307
HapII	CCGG	2 cut(s)	8, 118
HgaI	GACGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	8, 118
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	3 cut(s)	8, 83, 125
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	234
LpnPI	CCDG	2 cut(s)	21, 131
MaeI	CTAG	1 cut(s)	307
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	4 cut(s)	62, 109, 165, 304
MflI	RGATCY	1 cut(s)	234
MluCI	AATT	2 cut(s)	203, 298
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	237, 269
MroI	TCCGGA	1 cut(s)	7
MspI	CCGG	2 cut(s)	8, 118
MspR9I	CCNGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	137
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	2 cut(s)	26, 248
RsaNI	GTAC	2 cut(s)	25, 247
Sau3AI	GATC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	118
SetI	ASST	5 cut(s)	61, 114, 144, 183, 248
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	203, 298
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	203, 298
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	200
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.