RchiOBHm_Chr5g0030451

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003938
Physical Location & Seq
Forward (+)
24105848 .. 24108253
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30978

Sequence Viewer

Length: 1731 bp
ATGGATGATACTGAAATCAGAAACAGCGTGGATGATGTTGAAATGAATGAGTCTGATAATGAAAGTGTTGGCCAAGAGAGTCGTATTGGAAGTTCTTATATGCCAACTTTTCAATACTCTCAGCAGAAAATGAGACAAGGTTTGGCCAAGTACATTTCTTCAAGTGGGCAAGTTTATTCTTCTGCTCAACATGCTAGATTTGAAAAGTTTATTCAAGAATATGTTCAGTCTGAGTATTCTAGTCTTTGCCTGCGCACTATCAAAAGTGATTCTCTGAACTACTTCAATGATATGAAAAGAGCACTGGTATCCGAGCTTTCTGGTTTCAATGGTACGTTTTCTTTCAGTACTAATTTCTGGAGTAGTGCCGATGAACAACTTGGTTTCATTTGTGTTACTGCACATTATATTGACTCTGCTTGGATGTTGCAAAGGAGAATCATTGCTTTTCGTATGCTCGAATATCCTCATAGTGATACTGTTATATTTCAGAGCATAATGGATATATTTAGGGAATATATGATTGATGATAAGGTCTTCAACATTACTTTTGATGATGTTACTGGGAGTGAAGCCATCATTGACATGTTTAAAAACACTTTGCAACCTCCTTGTGGAGGTCAATTTTCTTATATGAGATGTTTATGCCATATGGTCAATTCAATGGTGCAAGAAGGCTTGAAATTGATGGAAGCTCATATAGAGAAAATTAGGGGTGCTATTCTTTACATTGCTTCCTCTTCTGCTAGGCAACAAGAATTTTCTGCTTTATGTGAGTCTCGAGGTCTGAAATATAGAGAGCTGAAACCTGATTTCAAGGATCATTGGAACTCTACTTTTCTCATGTTAGCATCTTGTGTCAACTACAATGCTGCAATTAGTGAATTTTACAATGGCAAACATGATGTATTTCGCTCCGTGGCACTCTCAAATTCGAAGGTTTATTTGCCCACATCTTCTGGTGGTCTTTTTATTTTGAGATATATTAGCAAGTGTTTTGATAAACACAGAGGTCATTCAATTCCAGAATTTACAGCAGTTTATGAAATAATGGAGTCGAAATTCAAAAGTTACTGCGAGTCCATGTTACCCAGTTACTGTTTAGCTGCAGCAATGGACCCTAGATTCAACGGACAGGGTCTAGATTTCTTAGTTAAAGACATTTCTGAATACTTGAGCATGCTATTGTTGAATATGGATACAAAAGCTATTGAAGCTAGGTTACATGACCTCTACAAAGGTTATGAATCCAAATTTGCAGAAAAAGAAAAACCCACTTCTGATCGAATCCCAAAACGAAAGAGATTTGATGACGGTGATGAAAGTGCTGTCGAAAAGTTTCTAGAATGGAGGAGACAGAAGGAAATAAAGACCTATGGGCCAACTGAGCTTCATAAATACTTGGGAGTTAACCATACAGCCTATATGACCAATGAAGAGTTTCAGAATTTTGATGTTTTAGCTTGGTGGAAAGACAATGCACTGTCATTTCCTGTGCTTTCAAAAATGGCATGTGATCTACTAACGGTTGCGGTGTCTGCAATAGCACCGGAGTTTGTGTTCAGTAGTACTTCAGGTAACCAGGTCCTGGACTATAAGAGGAGCATGGAACCTTCAGAAATGTTGGACTGCCTTTTCTGCATGAAGGATTGGGAAGATGCACGACTTCGAGCTCAGAACTGGACGGATGATGACATGGTCAAGTACTATGCAGATTCAGAGCAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT

Protein Analysis

576

Amino Acids

66.54

Weight (kDa)

5.25

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 464 - 551 5.1e-18 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 1588
AciI CCGC 1 cut(s) 1532
AclWI GGATC 1 cut(s) 828
AcoI YGGCCR 2 cut(s) 70, 144
AcsI RAATTY 7 cut(s) 758, 884, 931, 1028, 1061, 1253, 1447
AcuI CTGAAG 2 cut(s) 1557, 1599
AfaI GTAC 5 cut(s) 152, 334, 349, 1570, 1706
AfiI CCNNNNNNNGG 3 cut(s) 614, 617, 1588
AflIII ACRYGT 1 cut(s) 585
AjnI CCWGG 2 cut(s) 1581, 1587
AloI GAACNNNNNNTCC 2 cut(s) 1544, 1576
AluBI AGCT 9 cut(s) 316, 695, 802, 1106, 1208, 1217, 1390, 1463, 1673
AluI AGCT 9 cut(s) 316, 695, 802, 1106, 1208, 1217, 1390, 1463, 1673
Alw21I GWGCWC 2 cut(s) 304, 1675
Alw26I GTCTC 3 cut(s) 127, 783, 1348
AlwI GGATC 1 cut(s) 828
AlwNI CAGNNNCTG 2 cut(s) 1098, 1588
Ama87I CYCGRG 1 cut(s) 780
AoxI GGCC 3 cut(s) 70, 144, 1379
ApeKI GCWGC 3 cut(s) 872, 1106, 1109
ApoI RAATTY 7 cut(s) 758, 884, 931, 1028, 1061, 1253, 1447
Asp700I GAANNNNTTC 4 cut(s) 222, 281, 1338, 1440
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 3 cut(s) 1117, 1379, 1585
AsuHPI GGTGA 1 cut(s) 1328
AsuII TTCGAA 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 780
AvaII GGWCC 2 cut(s) 1117, 1585
BalI TGGCCA 2 cut(s) 72, 146
BanII GRGCYC 1 cut(s) 1675
BarI GAAGNNNNNNTAC 2 cut(s) 1206, 1238
BbsI GAAGAC 1 cut(s) 529
Bbv12I GWGCWC 2 cut(s) 304, 1675
BbvI GCAGC 3 cut(s) 859, 1093, 1121
BccI CCATC 2 cut(s) 584, 682
BciT130I CCWGG 2 cut(s) 1583, 1589
BciVI GTATCC 2 cut(s) 319, 1192
BcoDI GTCTC 3 cut(s) 127, 783, 1348
BfaI CTAG 7 cut(s) 195, 240, 747, 1122, 1142, 1218, 1343
BfmI CTRYAG 1 cut(s) 1107
BfuI GTATCC 2 cut(s) 319, 1192
BisI GCNGC 3 cut(s) 873, 1107, 1110
BlsI GCNGC 3 cut(s) 874, 1108, 1111
BmcAI AGTACT 3 cut(s) 349, 1570, 1706
Bme1390I CCNGG 2 cut(s) 1583, 1589
Bme18I GGWCC 2 cut(s) 1117, 1585
BmeT110I CYCGRG 1 cut(s) 780
BmgT120I GGNCC 3 cut(s) 1117, 1379, 1585
BmiI GGNNCC 2 cut(s) 1119, 1611
BmrFI CCNGG 2 cut(s) 1583, 1589
BmrI ACTGGG 2 cut(s) 573, 1086
BmsI GCATC 2 cut(s) 860, 1648
BmuI ACTGGG 2 cut(s) 573, 1086
BpiI GAAGAC 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 379
Bpu14I TTCGAA 1 cut(s) 935
BpuEI CTTGAG 1 cut(s) 1195
BsaJI CCNNGG 1 cut(s) 918
BsaWI WCCGGW 1 cut(s) 1549
BsaXI ACNNNNNCTCC 2 cut(s) 1544, 1574
Bsc4I CCNNNNNNNGG 3 cut(s) 614, 617, 1588
Bse1I ACTGG 4 cut(s) 309, 568, 1092, 1685
Bse3DI GCAATG 3 cut(s) 441, 729, 1119
BseBI CCWGG 2 cut(s) 1583, 1589
BseDI CCNNGG 1 cut(s) 918
BseGI GGATG 4 cut(s) 10, 37, 429, 1693
BseLI CCNNNNNNNGG 3 cut(s) 614, 617, 1588
BseMI GCAATG 3 cut(s) 441, 729, 1119
BseMII CTCAG 4 cut(s) 134, 222, 1377, 1688
BseNI ACTGG 4 cut(s) 309, 568, 1092, 1685
BseRI GAGGAG 2 cut(s) 1366, 1615
BseXI GCAGC 3 cut(s) 859, 1093, 1121
BsgI GTGCAG 1 cut(s) 384
BshFI GGCC 3 cut(s) 72, 146, 1381
BsiHKAI GWGCWC 2 cut(s) 304, 1675
BsiHKCI CYCGRG 1 cut(s) 780
BsiSI CCGG 1 cut(s) 1550
BslI CCNNNNNNNGG 3 cut(s) 614, 617, 1588
BsmAI GTCTC 3 cut(s) 127, 783, 1348
BsnI GGCC 3 cut(s) 72, 146, 1381
BsoBI CYCGRG 1 cut(s) 780
Bsp119I TTCGAA 1 cut(s) 935
Bsp1286I GDGCHC 2 cut(s) 304, 1675
Bsp143I GATC 3 cut(s) 820, 1282, 1516
BspACI CCGC 1 cut(s) 1532
BspANI GGCC 3 cut(s) 72, 146, 1381
BspCNI CTCAG 4 cut(s) 133, 223, 1378, 1687
BspLI GGNNCC 2 cut(s) 1119, 1611
BspMAI CTGCAG 1 cut(s) 1111
BspPI GGATC 1 cut(s) 828
BspT104I TTCGAA 1 cut(s) 935
BsrDI GCAATG 3 cut(s) 441, 729, 1119
BsrI ACTGG 4 cut(s) 309, 568, 1092, 1685
BssECI CCNNGG 1 cut(s) 918
BssMI GATC 3 cut(s) 820, 1282, 1516
Bst2UI CCWGG 2 cut(s) 1583, 1589
Bst4CI ACNGT 5 cut(s) 481, 1100, 1316, 1485, 1528
Bst6I CTCTTC 2 cut(s) 745, 1431
BstBI TTCGAA 1 cut(s) 935
BstC8I GCNNGC 2 cut(s) 251, 1181
BstDEI CTNAG 5 cut(s) 120, 231, 1150, 1386, 1674
BstDSI CCRYGG 1 cut(s) 918
BstEII GGTNACC 1 cut(s) 1577
BstENI CCTNNNNNAGG 1 cut(s) 615
BstF5I GGATG 4 cut(s) 10, 37, 429, 1693
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 3 cut(s) 823, 1285, 1519
BstMAI GTCTC 3 cut(s) 127, 783, 1348
BstMBI GATC 3 cut(s) 820, 1282, 1516
BstMWI GCNNNNNNNGC 5 cut(s) 191, 1214, 1387, 1538, 1638
BstNI CCWGG 2 cut(s) 1583, 1589
BstNSI RCATGY 4 cut(s) 194, 589, 1183, 1515
BstPI GGTNACC 1 cut(s) 1577
BstSCI CCNGG 2 cut(s) 1581, 1587
BstSFI CTRYAG 1 cut(s) 1107
BstV1I GCAGC 3 cut(s) 859, 1093, 1121
BstV2I GAAGAC 1 cut(s) 529
BsuI GTATCC 2 cut(s) 319, 1192
BsuRI GGCC 3 cut(s) 72, 146, 1381
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 4 cut(s) 10, 37, 429, 1693
BtsI GCAGTG 1 cut(s) 1730
BtsIMutI CAGTG 3 cut(s) 302, 1481, 1730
Cac8I GCNNGC 2 cut(s) 251, 1181
CaiI CAGNNNCTG 2 cut(s) 1098, 1588
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 3 cut(s) 1117, 1379, 1585
CsiI ACCWGGT 1 cut(s) 1581
Csp6I GTAC 5 cut(s) 151, 333, 348, 1569, 1705
CviQI GTAC 5 cut(s) 151, 333, 348, 1569, 1705
DdeI CTNAG 5 cut(s) 120, 231, 1150, 1386, 1674
DpnI GATC 3 cut(s) 822, 1284, 1518
DpnII GATC 3 cut(s) 820, 1282, 1516
DraI TTTAAA 1 cut(s) 592
EaeI YGGCCR 2 cut(s) 70, 144
Eam1104I CTCTTC 2 cut(s) 745, 1431
EarI CTCTTC 2 cut(s) 745, 1431
Ecl136II GAGCTC 1 cut(s) 1673
Eco24I GRGCYC 1 cut(s) 1675
Eco47I GGWCC 2 cut(s) 1117, 1585
Eco53kI GAGCTC 1 cut(s) 1673
Eco57I CTGAAG 2 cut(s) 1557, 1599
Eco88I CYCGRG 1 cut(s) 780
Eco91I GGTNACC 1 cut(s) 1577
EcoICRI GAGCTC 1 cut(s) 1673
EcoNI CCTNNNNNAGG 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 1585
EcoO65I GGTNACC 1 cut(s) 1577
EcoRII CCWGG 2 cut(s) 1581, 1587
EcoT38I GRGCYC 1 cut(s) 1675
FauNDI CATATG 1 cut(s) 651
Fnu4HI GCNGC 3 cut(s) 873, 1107, 1110
FokI GGATG 4 cut(s) 17, 44, 436, 1700
FriOI GRGCYC 1 cut(s) 1675
Fsp4HI GCNGC 3 cut(s) 873, 1107, 1110
FspBI CTAG 7 cut(s) 195, 240, 747, 1122, 1142, 1218, 1343
FspI TGCGCA 1 cut(s) 254
GlaI GCGC 1 cut(s) 254
GluI GCNGC 3 cut(s) 873, 1107, 1110
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 3 cut(s) 72, 146, 1381
HapII CCGG 1 cut(s) 1550
HhaI GCGC 1 cut(s) 255
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HincII GTYRAC 2 cut(s) 862, 1411
HindII GTYRAC 2 cut(s) 862, 1411
HpaI GTTAAC 1 cut(s) 1411
HpaII CCGG 1 cut(s) 1550
HphI GGTGA 1 cut(s) 1328
Hpy166II GTNNAC 2 cut(s) 862, 1411
Hpy188III TCNNGA 6 cut(s) 215, 358, 780, 1025, 1142, 1343
Hpy8I GTNNAC 2 cut(s) 862, 1411
HpyAV CCTTC 5 cut(s) 668, 931, 1354, 1623, 1639
HpyCH4III ACNGT 5 cut(s) 481, 1100, 1316, 1485, 1528
HpyCH4IV ACGT 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 1214, 1387, 1538, 1638
HpyF3I CTNAG 5 cut(s) 120, 231, 1150, 1386, 1674
HpySE526I ACGT 1 cut(s) 335
HspAI GCGC 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 1411
Kzo9I GATC 3 cut(s) 820, 1282, 1516
LmnI GCTCC 2 cut(s) 920, 1602
Lsp1109I GCAGC 3 cut(s) 859, 1093, 1121
LweI GCATC 2 cut(s) 860, 1648
MabI ACCWGGT 1 cut(s) 1581
MaeI CTAG 7 cut(s) 195, 240, 747, 1122, 1142, 1218, 1343
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 7 cut(s) 394, 559, 1070, 1086, 1094, 1221, 1577
MalI GATC 3 cut(s) 822, 1284, 1518
MboI GATC 3 cut(s) 820, 1282, 1516
MboII GAAGA 7 cut(s) 150, 171, 529, 732, 948, 1448, 1667
MhlI GDGCHC 2 cut(s) 304, 1675
MlsI TGGCCA 2 cut(s) 72, 146
MluNI TGGCCA 2 cut(s) 72, 146
MlyI GAGTC 6 cut(s) 59, 88, 407, 785, 1064, 1088
MmeI TCCRAC 1 cut(s) 1605
MnlI CCTC 9 cut(s) 477, 611, 618, 748, 776, 1004, 1241, 1344, 1593
Mox20I TGGCCA 2 cut(s) 72, 146
MroXI GAANNNNTTC 4 cut(s) 222, 281, 1338, 1440
MscI TGGCCA 2 cut(s) 72, 146
MseI TTAA 3 cut(s) 591, 1155, 1410
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 2 cut(s) 72, 146
MspI CCGG 1 cut(s) 1550
MspR9I CCNGG 2 cut(s) 1583, 1589
MvaI CCWGG 2 cut(s) 1583, 1589
MwoI GCNNNNNNNGC 5 cut(s) 191, 1214, 1387, 1538, 1638
NdeI CATATG 1 cut(s) 651
NdeII GATC 3 cut(s) 820, 1282, 1516
NlaIV GGNNCC 2 cut(s) 1119, 1611
NsbI TGCGCA 1 cut(s) 254
NspI RCATGY 4 cut(s) 194, 589, 1183, 1515
NspV TTCGAA 1 cut(s) 935
PaeI GCATGC 1 cut(s) 1183
PaeR7I CTCGAG 1 cut(s) 780
PciI ACATGT 1 cut(s) 585
PdmI GAANNNNTTC 4 cut(s) 222, 281, 1338, 1440
PfeI GAWTC 6 cut(s) 269, 438, 1125, 1247, 1287, 1715
PflFI GACNNNGTC 2 cut(s) 1137, 1697
PflMI CCANNNNNTGG 1 cut(s) 1588
PfoI TCCNGGA 1 cut(s) 1587
PkrI GCNGC 3 cut(s) 874, 1108, 1111
PleI GAGTC 6 cut(s) 58, 87, 407, 784, 1063, 1087
PpsI GAGTC 6 cut(s) 58, 87, 407, 784, 1063, 1087
PpuMI RGGWCCY 1 cut(s) 1585
PscI ACATGT 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 1675
Psp5II RGGWCCY 1 cut(s) 1585
Psp6I CCWGG 2 cut(s) 1581, 1587
PspEI GGTNACC 1 cut(s) 1577
PspGI CCWGG 2 cut(s) 1581, 1587
PspN4I GGNNCC 2 cut(s) 1119, 1611
PspPI GGNCC 3 cut(s) 1117, 1379, 1585
PspPPI RGGWCCY 1 cut(s) 1585
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PstI CTGCAG 1 cut(s) 1111
PstNI CAGNNNCTG 2 cut(s) 1098, 1588
PsyI GACNNNGTC 2 cut(s) 1137, 1697
RsaI GTAC 5 cut(s) 152, 334, 349, 1570, 1706
RsaNI GTAC 5 cut(s) 151, 333, 348, 1569, 1705
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 1 cut(s) 1675
SaqAI TTAA 3 cut(s) 591, 1155, 1410
SatI GCNGC 3 cut(s) 873, 1107, 1110
Sau3AI GATC 3 cut(s) 820, 1282, 1516
Sau96I GGNCC 3 cut(s) 1117, 1379, 1585
ScaI AGTACT 3 cut(s) 349, 1570, 1706
SchI GAGTC 6 cut(s) 59, 88, 407, 785, 1064, 1088
ScrFI CCNGG 2 cut(s) 1583, 1589
SduI GDGCHC 2 cut(s) 304, 1675
SexAI ACCWGGT 1 cut(s) 1581
SfaNI GCATC 2 cut(s) 860, 1648
SfcI CTRYAG 1 cut(s) 1107
Sfr274I CTCGAG 1 cut(s) 780
SfuI TTCGAA 1 cut(s) 935
SinI GGWCC 2 cut(s) 1117, 1585
SlaI CTCGAG 1 cut(s) 780
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 780, 1174
SmoI CTYRAG 2 cut(s) 780, 1174
SphI GCATGC 1 cut(s) 1183
SsiI CCGC 1 cut(s) 1532
SspMI CTAG 7 cut(s) 195, 240, 747, 1122, 1142, 1218, 1343
SstI GAGCTC 1 cut(s) 1675
StyD4I CCNGG 2 cut(s) 1581, 1587
TaaI ACNGT 5 cut(s) 481, 1100, 1316, 1485, 1528
TaiI ACGT 1 cut(s) 338
TaqI TCGA 7 cut(s) 459, 781, 935, 1058, 1285, 1332, 1669
TatI WGTACW 4 cut(s) 150, 347, 1568, 1704
TfiI GAWTC 6 cut(s) 269, 438, 1125, 1247, 1287, 1715
Tru1I TTAA 3 cut(s) 591, 1155, 1410
Tru9I TTAA 3 cut(s) 591, 1155, 1410
TscAI CASTG 3 cut(s) 309, 1488, 1730
TseI GCWGC 3 cut(s) 872, 1106, 1109
TspGWI ACGGA 3 cut(s) 907, 1146, 1700
TspRI CASTG 3 cut(s) 309, 1488, 1730
Tth111I GACNNNGTC 2 cut(s) 1137, 1697
Van91I CCANNNNNTGG 1 cut(s) 1588
VpaK11BI GGWCC 2 cut(s) 1117, 1585
XagI CCTNNNNNAGG 1 cut(s) 615
XapI RAATTY 7 cut(s) 758, 884, 931, 1028, 1061, 1253, 1447
XbaI TCTAGA 2 cut(s) 1141, 1342
XceI RCATGY 4 cut(s) 194, 589, 1183, 1515
XhoI CTCGAG 1 cut(s) 780
XmnI GAANNNNTTC 4 cut(s) 222, 281, 1338, 1440
XspI CTAG 7 cut(s) 195, 240, 747, 1122, 1142, 1218, 1343
ZrmI AGTACT 3 cut(s) 349, 1570, 1706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.