Rroxscaffold_3G00221970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003938
Physical Location & Seq
Forward (+)
4980341 .. 4981605
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221970.1

Sequence Viewer

Length: 450 bp
ATGGGACGGAACCCTTCAAGGAGAAACTCGACTAAGGAGAGATTTGCTCAAGGAAATATCCCTTTGAGATACAATCCCTTTGAGATACAATCCCTTGGAGATACAATCCCTTTGAGATACAATCCCTTTGAGATACAATCCCTTGGAGATACAATCCCTTTGAGATACAATCCATTTGAGATACAATCTATTCGAGGCACAATGTCTTCGAAGAAGAATTCTCTCTATGTTTTGAGCTTGGGATTCAACAAGATCACGTATGCATGTTTGGTGCATCTAAAAGATTTGACAAACTTGGAGAGCTTGAACCTGGATTCTTGTAAGATAGGTGACGAGGGGCTTGCACACTTGGCAGGGTTTGTACTCTTGAAGAATTTGGAGTTGTCCGACATCGAAGTTGGAAGCAATGGGATTCGTCATCTCTCGGGGTTAAAGAATCGGAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.78

Weight (kDa)

9.39

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 217, 373
AfaI GTAC 1 cut(s) 363
AgsI TTSAA 4 cut(s) 18, 247, 307, 370
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 2 cut(s) 237, 303
AluI AGCT 2 cut(s) 237, 303
Ama87I CYCGRG 1 cut(s) 424
ApoI RAATTY 2 cut(s) 217, 373
AsuHPI GGTGA 1 cut(s) 341
AsuII TTCGAA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 31, 63
Bpu14I TTCGAA 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 94, 142
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 94, 142
BseMI GCAATG 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 424
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 424
Bsp119I TTCGAA 1 cut(s) 209
Bsp143I GATC 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 11
BspT104I TTCGAA 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 94, 142
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 2 cut(s) 94, 142
Bst2UI CCWGG 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 33
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 362
CviAII CATG 1 cut(s) 264
CviJI RGCY 3 cut(s) 237, 303, 340
CviKI_1 RGCY 3 cut(s) 237, 303, 340
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 94, 142
Eco88I CYCGRG 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 94, 142
EcoT22I ATGCAT 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 94, 142
FaeI CATG 1 cut(s) 267
FaiI YATR 3 cut(s) 228, 261, 265
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 263
Hin1II CATG 1 cut(s) 267
HinfI GANTC 4 cut(s) 243, 314, 412, 436
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 388, 441
Hpy188III TCNNGA 1 cut(s) 367
HpyAV CCTTC 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 3 cut(s) 263, 274, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 1 cut(s) 267
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 3 cut(s) 296, 323, 339
LweI GCATC 1 cut(s) 283
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 329
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 4 cut(s) 198, 223, 226, 382
MluCI AATT 3 cut(s) 217, 373, 445
MmeI TCCRAC 2 cut(s) 379, 411
MnlI CCTC 2 cut(s) 188, 328
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 2 cut(s) 431, 448
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 1 cut(s) 267
NspV TTCGAA 1 cut(s) 209
PfeI GAWTC 4 cut(s) 243, 314, 412, 436
Ppu21I YACGTR 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 431, 448
Sau3AI GATC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 311
SetI ASST 5 cut(s) 239, 260, 305, 312, 331
SfaNI GCATC 1 cut(s) 283
SfuI TTCGAA 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 3 cut(s) 217, 373, 445
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 94, 142
TaiI ACGT 1 cut(s) 260
TaqI TCGA 4 cut(s) 29, 193, 209, 393
TasI AATT 3 cut(s) 217, 373, 445
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 4 cut(s) 243, 314, 412, 436
Tru1I TTAA 2 cut(s) 431, 448
Tru9I TTAA 2 cut(s) 431, 448
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 22
XapI RAATTY 2 cut(s) 217, 373
XceI RCATGY 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.