FvH4_2g15281

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003938
Physical Location & Seq
Forward (+)
13446984 .. 13447926
943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15281.t1

Sequence Viewer

Length: 828 bp
ATGTTGAACAGTTGCAAAGGTTACACCAATGCAATGATTGTTTACTGTAATGACACTGAGGATATGTGGAACCTTTGTTTCGAATTTTTGGAATTTTTGAAAGTCTTTTATGATGCCACATGCATTTGCTCAGTTATTTACTATCCAACATCTCCTATTGCACTGAATGATTTGTATGCAATTAGTGTTACTTTCCATAAGTACAAGATCAACCTTAATGGTTTGGAATTGATATTGAGTGAGATCAGGAAGAATTTGGAAATTACTATCCCAATGACATTAACTAGCATACAAAAGAATTTCAATGATACTTATAAGTTATACGCAAAGAAATATGCAGATGCTAGTGTTCAAAGTAGCCAAACTTCTCACCGTCCTTCTCCATCAGAATCTAATGCATCTAATAGTCAAGCTATTTTTGGTTTGCTTGCTAGCAAAACCAAACAAAGGGGTATTGTCAGTTCTTGCAATGAATTTTTTAAATATTTAGATGCTGATTTTACTGAGTTCATGACTGAGGAAGAAAAAGTAAAGTTGGACATTTTGAGATGGTGGAAAGCATATAGCAGGAATTTTCATGTGCTTTCCATCATGGCGCGTGATGTACTAACAATTCCAGTATCCACAATAGCATTGGAGTCTGCTTTTAGTGCAGGTGGTCGTGTAGTGGATGAAAAGAGGTCAAGGTTAACTCCTAGATACTTGGAGGCTCTTATGTTGGTTAAAGATTGGAATGATGCAGATCGTAGGGCTCAAACATTTGTGGATGAGGAATTGGCATGTGATGAAGAAGAAAACAAAGGCGCACTTACCATTCATATTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT

Protein Analysis

276

Amino Acids

31.52

Weight (kDa)

5.28

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 172 - 244 2e-24 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 644
AccII CGCG 1 cut(s) 598
AcsI RAATTY 6 cut(s) 83, 92, 253, 298, 473, 571
AfaI GTAC 2 cut(s) 203, 606
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 4 cut(s) 7, 100, 304, 353
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
ApoI RAATTY 6 cut(s) 83, 92, 253, 298, 473, 571
AspLEI GCGC 2 cut(s) 598, 806
AsuHPI GGTGA 1 cut(s) 362
AsuII TTCGAA 1 cut(s) 81
AsuNHI GCTAGC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 754
BarI GAAGNNNNNNTAC 2 cut(s) 349, 381
BccI CCATC 3 cut(s) 391, 543, 596
BciVI GTATCC 1 cut(s) 631
BfaI CTAG 4 cut(s) 285, 345, 432, 696
BfuAI ACCTGC 1 cut(s) 644
BfuI GTATCC 1 cut(s) 631
BmiI GGNNCC 1 cut(s) 71
BmsI GCATC 5 cut(s) 103, 331, 407, 481, 727
BmtI GCTAGC 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 741
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse1I ACTGG 1 cut(s) 617
Bse3DI GCAATG 2 cut(s) 39, 475
Bse8I GATNNNNATC 1 cut(s) 741
BseGI GGATG 2 cut(s) 676, 772
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMI GCAATG 2 cut(s) 39, 475
BseMII CTCAG 4 cut(s) 48, 144, 495, 507
BseNI ACTGG 1 cut(s) 617
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 1 cut(s) 598
BslI CCNNNNNNNGG 1 cut(s) 447
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 754
Bsp143I GATC 3 cut(s) 207, 243, 742
BspCNI CTCAG 4 cut(s) 49, 143, 496, 508
BspFNI CGCG 1 cut(s) 598
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 1 cut(s) 71
BspMI ACCTGC 1 cut(s) 644
BspOI GCTAGC 1 cut(s) 435
BspT104I TTCGAA 1 cut(s) 81
BsrDI GCAATG 2 cut(s) 39, 475
BsrI ACTGG 1 cut(s) 617
BssMI GATC 3 cut(s) 207, 243, 742
Bst4CI ACNGT 3 cut(s) 11, 47, 374
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 429, 433
BstDEI CTNAG 4 cut(s) 57, 130, 504, 516
BstF5I GGATG 2 cut(s) 676, 772
BstFNI CGCG 1 cut(s) 598
BstHHI GCGC 2 cut(s) 598, 806
BstKTI GATC 3 cut(s) 210, 246, 745
BstMBI GATC 3 cut(s) 207, 243, 742
BstMWI GCNNNNNNNGC 1 cut(s) 650
BstNSI RCATGY 2 cut(s) 123, 783
BstUI CGCG 1 cut(s) 598
BsuI GTATCC 1 cut(s) 631
BtsCI GGATG 2 cut(s) 676, 772
BtsIMutI CAGTG 2 cut(s) 54, 161
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 2 cut(s) 429, 433
CciI TCATGA 1 cut(s) 510
CfoI GCGC 2 cut(s) 598, 806
Csp6I GTAC 2 cut(s) 202, 605
CviAII CATG 5 cut(s) 120, 511, 578, 592, 780
CviJI RGCY 4 cut(s) 360, 413, 710, 752
CviKI_1 RGCY 4 cut(s) 360, 413, 710, 752
CviQI GTAC 2 cut(s) 202, 605
DdeI CTNAG 4 cut(s) 57, 130, 504, 516
DpnI GATC 3 cut(s) 209, 245, 744
DpnII GATC 3 cut(s) 207, 243, 742
DraI TTTAAA 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 754
EcoT22I ATGCAT 2 cut(s) 125, 400
EcoT38I GRGCYC 1 cut(s) 754
FaeI CATG 5 cut(s) 123, 514, 581, 595, 783
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FatI CATG 5 cut(s) 119, 510, 577, 591, 779
FokI GGATG 2 cut(s) 683, 779
FriOI GRGCYC 1 cut(s) 754
FspBI CTAG 4 cut(s) 285, 345, 432, 696
GlaI GCGC 2 cut(s) 597, 805
HhaI GCGC 2 cut(s) 598, 806
Hin1II CATG 5 cut(s) 123, 514, 581, 595, 783
Hin6I GCGC 2 cut(s) 596, 804
HinP1I GCGC 2 cut(s) 596, 804
HincII GTYRAC 1 cut(s) 690
HindII GTYRAC 1 cut(s) 690
HinfI GANTC 2 cut(s) 389, 638
HpaI GTTAAC 1 cut(s) 690
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 43, 690
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 2 cut(s) 247, 511
Hpy8I GTNNAC 2 cut(s) 43, 690
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 3 cut(s) 11, 47, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 650
HpyF3I CTNAG 4 cut(s) 57, 130, 504, 516
Hsp92II CATG 5 cut(s) 123, 514, 581, 595, 783
HspAI GCGC 2 cut(s) 596, 804
KspAI GTTAAC 1 cut(s) 690
Kzo9I GATC 3 cut(s) 207, 243, 742
LpnPI CCDG 4 cut(s) 232, 553, 630, 639
LweI GCATC 5 cut(s) 103, 331, 407, 481, 727
MaeI CTAG 4 cut(s) 285, 345, 432, 696
MaeIII GTNAC 2 cut(s) 20, 187
MalI GATC 3 cut(s) 209, 245, 744
MboI GATC 3 cut(s) 207, 243, 742
MboII GAAGA 4 cut(s) 262, 533, 800, 803
MhlI GDGCHC 1 cut(s) 754
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 170, 516
MnlI CCTC 5 cut(s) 52, 511, 672, 700, 763
Mph1103I ATGCAT 2 cut(s) 125, 400
MseI TTAA 6 cut(s) 216, 281, 480, 689, 723, 826
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 1 cut(s) 650
NdeII GATC 3 cut(s) 207, 243, 742
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 5 cut(s) 123, 514, 581, 595, 783
NlaIV GGNNCC 1 cut(s) 71
NsiI ATGCAT 2 cut(s) 125, 400
NspI RCATGY 2 cut(s) 123, 783
NspV TTCGAA 1 cut(s) 81
PagI TCATGA 1 cut(s) 510
PaqCI CACCTGC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 389
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PsiI TTATAA 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 71
PsrI GAACNNNNNNTAC 2 cut(s) 445, 477
RsaI GTAC 2 cut(s) 203, 606
RsaNI GTAC 2 cut(s) 202, 605
SaqAI TTAA 6 cut(s) 216, 281, 480, 689, 723, 826
Sau3AI GATC 3 cut(s) 207, 243, 742
SchI GAGTC 1 cut(s) 647
SduI GDGCHC 1 cut(s) 754
SetI ASST 7 cut(s) 22, 75, 216, 415, 658, 683, 689
SfaNI GCATC 5 cut(s) 103, 331, 407, 481, 727
SfuI TTCGAA 1 cut(s) 81
SspI AATATT 1 cut(s) 485
SspMI CTAG 4 cut(s) 285, 345, 432, 696
TaaI ACNGT 3 cut(s) 11, 47, 374
TaqI TCGA 1 cut(s) 81
TatI WGTACW 2 cut(s) 201, 604
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 6 cut(s) 216, 281, 480, 689, 723, 826
Tru9I TTAA 6 cut(s) 216, 281, 480, 689, 723, 826
TscAI CASTG 2 cut(s) 61, 168
TspDTI ATGAA 6 cut(s) 486, 499, 566, 687, 801, 806
TspRI CASTG 2 cut(s) 61, 168
XapI RAATTY 6 cut(s) 83, 92, 253, 298, 473, 571
XceI RCATGY 2 cut(s) 123, 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XspI CTAG 4 cut(s) 285, 345, 432, 696
Zsp2I ATGCAT 2 cut(s) 125, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.