Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003938

Physical Location & Seq

Genomic Coordinates Forward (+)

48862670 .. 48868704

Gene Structure 6035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGTTGCGGGGAAAAGAAGTTGGTGGATGAGCAGATTTTGATCGGGTTGATGAGGGGAGGTCCGAGAATGGTTTTGTTGATGGACTCGCAGAGGAAAGGTCAAATCTATAGTTCGCGGGGCCATCGTGACTCTATTACGGCATTAGCGGTTGGAGGAGAATTTCTATTTAGCTCCTCATTTGACAAAACCATCCATGTGTGGTCTTTGCGGGACTTCGTCATGACGGAACCCTTCAAGGAGAAACCGACTAAGGAGAGATTTGCTCAAAGAAAGATCCGAGTGAGGTACAATCCCTTTGAGATACAATCTATTCAAGGCACAATGTCTTCGAAGAAGAATTCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0006996 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0009657 GO:0009658 GO:0009987 GO:0010109 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019222 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0031323 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW WD40 zf-RING_UBOX

Protein Analysis

116

Amino Acids

13.32

Weight (kDa)

10.0

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003938)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15281 FvH4_6g23002
prunus_persica	Prupe.7G011700_v2.0.a1 Prupe.8G060700_v2.0.a1
pyrus_communis	pycom11g23400 pycom11g23410
rosa_chinensis	RchiOBHm_Chr3g0493121 RchiOBHm_Chr4g0416701 RchiOBHm_Chr5g0030191 RchiOBHm_Chr5g0030261 RchiOBHm_Chr5g0030451 RchiOBHm_Chr5g0030531
rosa_laevigata	RLG00000004075 RLG00000009332 RLG00000033223
rosa_roxburghii	Rroxscaffold_1G00012180 Rroxscaffold_3G00221970 Rroxscaffold_5G00352040 Rroxscaffold_5G00352700 Rroxscaffold_5G00366920 Rroxscaffold_6G00401320 Rroxscaffold_7G00214040
rosa_rugosa	Rorug05G0118200 Rorug05G0244100 Rorug05G0431600
rosa_samantha	Rh2AG303900 Rh5BG493400 Rh5CG358400 Rh5CG517400 Rh5DG213900 Rh6BG199100 Rh7DG307600
rosa_wichuraiana	Rw5G019230 Rw6G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	118
AciI	CCGC	4 cut(s)	9, 118, 149, 211
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	161, 340
AfaI	GTAC	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	238, 317
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
AlwI	GGATC	1 cut(s)	271
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	161, 340
AspS9I	GGNCC	2 cut(s)	62, 121
AsuII	TTCGAA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	321
BccI	CCATC	3 cut(s)	76, 132, 200
BceAI	ACGGC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 121
BmiI	GGNNCC	2 cut(s)	122, 231
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
Bpu14I	TTCGAA	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	41
BseGI	GGATG	2 cut(s)	34, 192
BseJI	GATNNNNATC	1 cut(s)	41
BseRI	GAGGAG	2 cut(s)	166, 171
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	123
Bsp119I	TTCGAA	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	42, 276
BspACI	CCGC	4 cut(s)	9, 118, 149, 211
BspANI	GGCC	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	122, 231
BspPI	GGATC	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	332
BssMI	GATC	2 cut(s)	42, 276
BstBI	TTCGAA	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	34, 192
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	2 cut(s)	45, 279
BstMBI	GATC	2 cut(s)	42, 276
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	34, 192
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	62, 121
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	197, 223
CviJI	RGCY	2 cut(s)	123, 174
CviKI_1	RGCY	2 cut(s)	123, 174
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	44, 278
DpnII	GATC	2 cut(s)	42, 276
Eco47I	GGWCC	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	340
FaeI	CATG	2 cut(s)	200, 226
FaiI	YATR	3 cut(s)	111, 198, 224
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	196, 222
FauI	CCCGC	3 cut(s)	2, 111, 204
FokI	GGATG	2 cut(s)	41, 179
FspBI	CTAG	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	200, 226
HinfI	GANTC	2 cut(s)	86, 131
Hpy188I	TCNGA	2 cut(s)	66, 281
Hpy188III	TCNNGA	2 cut(s)	128, 223
HpyAV	CCTTC	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	200, 226
Kzo9I	GATC	2 cut(s)	42, 276
LmnI	GCTCC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	44, 278
MboI	GATC	2 cut(s)	42, 276
MboII	GAAGA	3 cut(s)	321, 346, 349
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	2 cut(s)	161, 340
MlyI	GAGTC	2 cut(s)	80, 125
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	48, 53, 87, 149, 187, 279
MslI	CAYNNNNRTG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	118
NdeII	GATC	2 cut(s)	42, 276
NlaIII	CATG	2 cut(s)	200, 226
NlaIV	GGNNCC	2 cut(s)	122, 231
NmuCI	GTSAC	1 cut(s)	128
NspV	TTCGAA	1 cut(s)	332
PagI	TCATGA	1 cut(s)	222
PflFI	GACNNNGTC	1 cut(s)	218
PleI	GAGTC	2 cut(s)	80, 125
PpsI	GAGTC	2 cut(s)	80, 125
PspN4I	GGNNCC	2 cut(s)	122, 231
PspPI	GGNCC	2 cut(s)	62, 121
PsuI	RGATCY	1 cut(s)	276
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	197
Sau3AI	GATC	2 cut(s)	42, 276
Sau96I	GGNCC	2 cut(s)	62, 121
SchI	GAGTC	2 cut(s)	80, 125
SetI	ASST	4 cut(s)	64, 103, 176, 290
SfcI	CTRYAG	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	332
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	161, 340
SsiI	CCGC	4 cut(s)	9, 118, 149, 211
SspMI	CTAG	1 cut(s)	349
TaqI	TCGA	1 cut(s)	332
TasI	AATT	2 cut(s)	161, 340
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	242
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	161, 340
XspI	CTAG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.