Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003938

Physical Location & Seq

Genomic Coordinates Reverse (-)

28844429 .. 28850415

Gene Structure 5987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTGATGGAGTTCAAGATTATGAAGAAGAAAGGCTTACGGCGGCACATCCGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGACAGTGAAGATGGCATTGGCAATAGCAGCTATAGCAATAGCTTTACCAAATCCCATGCATTTGTCTCTAACTTTATCAATTGCCGGAGGCAGAGGAGCCTTCTGCACAAGAAGAAGAACCCATTGTTTAAAGACTACGGGTTCGGTCTTGCTGATGGCTCTGCTCTTTTCCAAGCAGCCCATTACACCGTAGAGTTGCTAGGATTTTCTTTACGGTGTGAGCGGTGCCTCGATTCTGGATACCAGGAGATTTTTCTAGGGAAGGAGTATCTCTATAGGACGGAACCCCTCAAGGAGAAACCGACTAAGGAGAGATTTGCTCAAGGAAAGATCCGAGTGAGGTACAATCCCTTTGAGATACAATCTATTCGAGGCACAATGTCTTCGAAGAAGAATTCCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.97

Weight (kDa)

10.21

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003938)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15281 FvH4_6g23002
prunus_persica	Prupe.7G011700_v2.0.a1 Prupe.8G060700_v2.0.a1
pyrus_communis	pycom11g23400 pycom11g23410
rosa_chinensis	RchiOBHm_Chr3g0493121 RchiOBHm_Chr4g0416701 RchiOBHm_Chr5g0030191 RchiOBHm_Chr5g0030261 RchiOBHm_Chr5g0030451 RchiOBHm_Chr5g0030531
rosa_laevigata	RLG00000004075 RLG00000009332 RLG00000033223
rosa_roxburghii	Rroxscaffold_1G00012180 Rroxscaffold_3G00221970 Rroxscaffold_5G00352040 Rroxscaffold_5G00352700 Rroxscaffold_5G00366920 Rroxscaffold_6G00401320 Rroxscaffold_7G00214040
rosa_rugosa	Rorug05G0118200 Rorug05G0244100 Rorug05G0431600
rosa_samantha	Rh2AG303900 Rh5BG493400 Rh5CG358400 Rh5CG517400 Rh5DG213900 Rh6BG199100 Rh7DG307600
rosa_wichuraiana	Rw5G019230 Rw6G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	307
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	2 cut(s)	43, 307
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	478
AfaI	GTAC	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	2 cut(s)	114, 126
AluI	AGCT	2 cut(s)	114, 126
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	409
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	111, 260
ApoI	RAATTY	1 cut(s)	478
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	123, 272
BccI	CCATC	2 cut(s)	89, 233
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	3 cut(s)	284, 341, 487
BfmI	CTRYAG	2 cut(s)	115, 358
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	3 cut(s)	44, 112, 261
BlsI	GCNGC	3 cut(s)	45, 113, 262
Bme1390I	CCNGG	1 cut(s)	329
BmiI	GGNNCC	3 cut(s)	182, 311, 369
BmrFI	CCNGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	459
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
Bpu14I	TTCGAA	1 cut(s)	470
BpuEI	CTTGAG	2 cut(s)	359, 390
BsaWI	WCCGGW	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	123, 272
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	309
BsiSI	CCGG	2 cut(s)	52, 169
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	470
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	43, 307
BspANI	GGCC	1 cut(s)	61
BspEI	TCCGGA	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	182, 311, 369
BspPI	GGATC	1 cut(s)	409
BspT104I	TTCGAA	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	307
BssMI	GATC	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	89, 274, 300
BstBI	TTCGAA	1 cut(s)	470
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 117
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	2 cut(s)	115, 358
BstV1I	GCAGC	2 cut(s)	123, 272
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	7 cut(s)	36, 61, 114, 126, 183, 243, 263
CviKI_1	RGCY	7 cut(s)	36, 61, 114, 126, 183, 243, 263
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
DraI	TTTAAA	1 cut(s)	214
Eco147I	AGGCCT	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	145
FaeI	CATG	1 cut(s)	143
FaiI	YATR	4 cut(s)	23, 117, 141, 360
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 49, 81
FatI	CATG	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	44, 112, 261
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	44, 112, 261
FspBI	CTAG	3 cut(s)	284, 341, 487
GluI	GCNGC	3 cut(s)	44, 112, 261
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	52, 169
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	52, 169
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	3 cut(s)	16, 52, 321
HpyAV	CCTTC	4 cut(s)	51, 72, 194, 340
HpyCH4III	ACNGT	3 cut(s)	89, 274, 300
HpyCH4V	TGCA	2 cut(s)	143, 190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 117
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	143
Kpn2I	TCCGGA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	5 cut(s)	65, 182, 306, 314, 341
Lsp1109I	GCAGC	2 cut(s)	123, 272
MaeI	CTAG	3 cut(s)	284, 341, 487
MalI	GATC	1 cut(s)	416
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	1 cut(s)	414
MfeI	CAATTG	1 cut(s)	163
MflI	RGATCY	1 cut(s)	414
MluCI	AATT	2 cut(s)	163, 478
MnlI	CCTC	6 cut(s)	165, 171, 323, 383, 417, 449
Mph1103I	ATGCAT	1 cut(s)	145
MroI	TCCGGA	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	213
MspI	CCGG	2 cut(s)	52, 169
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	111, 117
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	3 cut(s)	182, 311, 369
NsiI	ATGCAT	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	45, 113, 262
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	182, 311, 369
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	44, 112, 261
Sau3AI	GATC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	3 cut(s)	116, 128, 428
SfcI	CTRYAG	2 cut(s)	115, 358
SfuI	TTCGAA	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	374, 405
SmoI	CTYRAG	2 cut(s)	374, 405
Sse9I	AATT	2 cut(s)	163, 478
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	43, 307
SspMI	CTAG	3 cut(s)	284, 341, 487
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	89, 274, 300
TaqI	TCGA	3 cut(s)	315, 454, 470
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	2 cut(s)	163, 478
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	2 cut(s)	111, 260
TspDTI	ATGAA	2 cut(s)	38, 57
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	3 cut(s)	284, 341, 487
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.