Rw6G002650

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003938
Physical Location & Seq
Forward (+)
4230340 .. 4231943
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002650.1

Sequence Viewer

Length: 852 bp
ATGGAGGAATATTTTTTTCATATGAGGTGTGCATGTCATATCATTAATCTGATGGTGCAAGATGGACTAAAACTTATTGGAACCCATATTGGTTGTGTTAGGGATGCTATTGGTTATGTTTGTTCTTCTGATAGTAGAATTCAAGAATTCAATCAGCTATGCAAAAGTCAAGGTCTGAAACCTAAGAAATTTAAAAAAGACATGCCTATCCGTTGGAACTCAACTTATCACATGTTGAATAGTTGTCGAGGTTACACTAATGCATTGAGTGTTTTCTATAATGACAAATTTAATGACAACCTTTTGACTGAGGATATGTGGAATCTCTGTTTCAAATTTGTGTACTTTTTGAAAGTCTTTTATGATGCTACATGCAATTGCACCGGTGTTTATTATCCGACATCTCCTATTGCACTTAATGATTTGTATGCAATTAGTCTTACTTTTGAAAAATACAGATTTGAAAGTGGTCTTTTTGAAAAGATTTGTGAAGTGATGGAAGGCAAATACAAAAAGTATTGGGAGGAGGTTCCTTATACTTTTTGTTTTGGAGCTATTATGGATCCAAGGATCAAGCTTACTGGTTTGGAATTGATATTGAAAGAAATTGAGAAGAATTTATCTATTACTATGCCATTGAAAATAACTATTATCCAAAAGAATGTCAATGATACATATAAGTTGTATGAAAAGATATATGCTGCTGCTAGTGTTCAAGGTAGCCAAGCCCCTCACCGCCCTTCTTCATCAGGATCTAATGCATCTAGTTGTCAAGCTGTTTTTGGTTTGCTTGCTAGAAAAGCCAAACAAAAAGGTTTGTCAGTTCTTGCAATGAATTTTTCAAATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT

Protein Analysis

283

Amino Acids

32.5

Weight (kDa)

8.79

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
hAT-like_RNase-H PF14372 131 - 225 2.4e-10 hAT-like transposase, RNase-H fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 736
AclWI GGATC 4 cut(s) 557, 570, 578, 760
AcsI RAATTY 7 cut(s) 138, 146, 188, 287, 335, 616, 835
AfaI GTAC 1 cut(s) 344
AflIII ACRYGT 1 cut(s) 231
AgeI ACCGGT 1 cut(s) 383
AluBI AGCT 4 cut(s) 157, 554, 577, 776
AluI AGCT 4 cut(s) 157, 554, 577, 776
AlwI GGATC 4 cut(s) 557, 570, 578, 760
ApeKI GCWGC 2 cut(s) 701, 704
ApoI RAATTY 7 cut(s) 138, 146, 188, 287, 335, 616, 835
AseI ATTAAT 1 cut(s) 45
AsiGI ACCGGT 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 725
BamHI GGATCC 1 cut(s) 562
BbvI GCAGC 2 cut(s) 688, 691
BccI CCATC 3 cut(s) 46, 56, 490
BfaI CTAG 3 cut(s) 708, 765, 795
BisI GCNGC 2 cut(s) 702, 705
BlsI GCNGC 2 cut(s) 703, 706
BmiI GGNNCC 3 cut(s) 82, 531, 564
BmsI GCATC 3 cut(s) 94, 355, 770
BsaJI CCNNGG 1 cut(s) 566
BsaWI WCCGGW 1 cut(s) 383
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 586
Bse3DI GCAATG 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 566
BseGI GGATG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 837
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 586
BseRI GAGGAG 1 cut(s) 539
BseXI GCAGC 2 cut(s) 688, 691
BshTI ACCGGT 1 cut(s) 383
BsiSI CCGG 1 cut(s) 384
Bsp143I GATC 3 cut(s) 562, 570, 752
BspACI CCGC 1 cut(s) 736
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 82, 531, 564
BspPI GGATC 4 cut(s) 557, 570, 578, 760
BsrDI GCAATG 1 cut(s) 837
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 1 cut(s) 586
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 566
BssMI GATC 3 cut(s) 562, 570, 752
BssT1I CCWWGG 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 2 cut(s) 183, 309
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 3 cut(s) 565, 573, 755
BstMBI GATC 3 cut(s) 562, 570, 752
BstMWI GCNNNNNNNGC 1 cut(s) 800
BstNSI RCATGY 4 cut(s) 36, 205, 235, 375
BstV1I GCAGC 2 cut(s) 688, 691
BstX2I RGATCY 2 cut(s) 562, 752
BstYI RGATCY 2 cut(s) 562, 752
BtsCI GGATG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 383
Csp6I GTAC 1 cut(s) 343
CspAI ACCGGT 1 cut(s) 383
CviAII CATG 4 cut(s) 33, 202, 232, 372
CviJI RGCY 7 cut(s) 157, 554, 577, 723, 728, 776, 803
CviKI_1 RGCY 7 cut(s) 157, 554, 577, 723, 728, 776, 803
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 183, 309
DpnI GATC 3 cut(s) 564, 572, 754
DpnII GATC 3 cut(s) 562, 570, 752
DraI TTTAAA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 566
EcoRI GAATTC 2 cut(s) 138, 146
EcoT14I CCWWGG 1 cut(s) 566
EcoT22I ATGCAT 2 cut(s) 265, 763
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 4 cut(s) 36, 205, 235, 375
FatI CATG 4 cut(s) 32, 201, 231, 371
FauNDI CATATG 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 702, 705
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 702, 705
FspBI CTAG 3 cut(s) 708, 765, 795
GluI GCNGC 2 cut(s) 702, 705
HapII CCGG 1 cut(s) 384
Hin1II CATG 4 cut(s) 36, 205, 235, 375
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 1 cut(s) 322
HpaII CCGG 1 cut(s) 384
HphI GGTGA 1 cut(s) 725
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 4 cut(s) 51, 130, 177, 399
Hpy188III TCNNGA 2 cut(s) 143, 750
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 494, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 800
HpyF3I CTNAG 2 cut(s) 183, 309
Hsp92II CATG 4 cut(s) 36, 205, 235, 375
Kzo9I GATC 3 cut(s) 562, 570, 752
LmnI GCTCC 1 cut(s) 551
LpnPI CCDG 3 cut(s) 397, 567, 735
Lsp1109I GCAGC 2 cut(s) 688, 691
LweI GCATC 3 cut(s) 94, 355, 770
MaeI CTAG 3 cut(s) 708, 765, 795
MaeIII GTNAC 1 cut(s) 251
MalI GATC 3 cut(s) 564, 572, 754
MboI GATC 3 cut(s) 562, 570, 752
MboII GAAGA 3 cut(s) 117, 625, 735
MfeI CAATTG 1 cut(s) 376
MflI RGATCY 2 cut(s) 562, 752
MmeI TCCRAC 2 cut(s) 194, 422
MnlI CCTC 6 cut(s) 18, 242, 304, 517, 520, 741
Mph1103I ATGCAT 2 cut(s) 265, 763
MseI TTAA 4 cut(s) 45, 192, 291, 417
MspI CCGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 800
NdeI CATATG 1 cut(s) 21
NdeII GATC 3 cut(s) 562, 570, 752
NlaIII CATG 4 cut(s) 36, 205, 235, 375
NlaIV GGNNCC 3 cut(s) 82, 531, 564
NsiI ATGCAT 2 cut(s) 265, 763
NspI RCATGY 4 cut(s) 36, 205, 235, 375
PciI ACATGT 1 cut(s) 231
PfeI GAWTC 1 cut(s) 322
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 2 cut(s) 703, 706
PscI ACATGT 1 cut(s) 231
PshBI ATTAAT 1 cut(s) 45
PspN4I GGNNCC 3 cut(s) 82, 531, 564
PsuI RGATCY 2 cut(s) 562, 752
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 4 cut(s) 45, 192, 291, 417
SatI GCNGC 2 cut(s) 702, 705
Sau3AI GATC 3 cut(s) 562, 570, 752
SfaNI GCATC 3 cut(s) 94, 355, 770
SgrAI CRCCGGYG 1 cut(s) 383
SsiI CCGC 1 cut(s) 736
SspI AATATT 2 cut(s) 11, 847
SspMI CTAG 3 cut(s) 708, 765, 795
StyI CCWWGG 1 cut(s) 566
TaqI TCGA 1 cut(s) 247
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 4 cut(s) 45, 192, 291, 417
Tru9I TTAA 4 cut(s) 45, 192, 291, 417
TseI GCWGC 2 cut(s) 701, 704
TspDTI ATGAA 4 cut(s) 8, 702, 735, 848
TspGWI ACGGA 1 cut(s) 200
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 7 cut(s) 138, 146, 188, 287, 335, 616, 835
XceI RCATGY 4 cut(s) 36, 205, 235, 375
XspI CTAG 3 cut(s) 708, 765, 795
Zsp2I ATGCAT 2 cut(s) 265, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.