Rw5G019230

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003938
Physical Location & Seq
Forward (+)
25048097 .. 25049890
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G019230.1

Sequence Viewer

Length: 1518 bp
ATGGATGATACTGAAATCAGAAACAGCGTGGATGATGTTGAAATGAATGAGTCTGATAATGAAAGTGTTGGCCAAGAAAGTCGTATTGGAAGTTCTTATATGCCAACTTTTCAATACTCTCAGCAGAAAATGAGACAAGGTTTGACCAAGTACATTTCTTCAAGTGGGCAAGTTTATTCTTCTGCTCAACATGCTAGATTTGAAAAGTTTATTCAAGAATATGTTCAGTCTGAGTATTCTAGTCTTTGCCTGCACACTATCAAAAGTGATTCTCTGAACTACTTCAATGATATGAAAAGAGCACTGGTATCCGAGCTTTCTGGTTTCAATGGTACGTTTTCTTTCAGTACTAATTTCTGGAGTAGTGCCGATGAACAACTTGGTTTCATTTGTGTTACTGCACATTATATTGACTCTGCTTGGATGTTGCAAAGGAGAATCATTGCTTTTCGTATGCTCGAATATCCTCATAGTGATACTGTTATATTTCAGAGCATAATGGATATATTTAGGGAATATATGATTGATGATAAGGTCTTCAACATTACTTTTGATGATGTTACTGGGAGTGATGCCATCATTGACATGTTTAAAAACACTTTGCAACCTCCTTGTCTGAAATATAGAGAGCTGAAACCTGATTTCAAGGATCATTGGAACTCTACTTTTCTCATGTTAGCATCTTGTGTCAACTACAATGCTGCAATTAGTGAATTTTACAATGGCAAACATGATGGTAGCAATCTTTTATGTGAAAGTGATTGGGAAATTAGTTTTCTTTTTATGAACTTTCTGAAAGTATTTCGCTCCGTGGCACTCTCAAATTCAAAGGTTTATTTGCCCACATCTTCTGGTGGTCTTTTTATTTTGAGATATATTAGCAAGTGTTTTGATAAACACAGAGGTCATTCAATTCCAGAATTTACAGCAGTTTATGAAATAATGGAGTCGAAATTCAAAAGTTACTGCGAGTGCATGTTACCCAGTTACTGTTTAGCTGCAGCAATGGACCCTAGATTCAACGGACAGGGTCTAGATTTCTTAGTTAAAGACATTTCTGAATACTTGAGCATGCTATTGTTGAATATGGATACAAAAGCTATTGAAGCTAGGTTACATGACCTCTACAAAGGTTATGAATCCAAATTTGCAGAAAAAGAAAAACCCACTTCTGATCGAATCCCAAAACGAAAGAGATTTGATGACGCCTATATGACCAATGAAGAGTTTCAGAATTTTGATGTTTTAGCTTGGTGGAAAGACAATGCACTGTCATTTCCTGTGCTTTCAAAAATGGCATGTGATCTACTAACGGTTGCGGTGTCTGCAATAGCACCGGAGTTTGTGTTCAGTAGTACTTCAGGTAACCAGGTCCTGGACTATAAGAGGAGCATGGAACCTTCAGAAATGTTGGACTGCCTTTTCTGCATGAAGGATTGGGAAGATGCACGACTTCGAGCTCAGAACTGGACGGATGATGACATGGTCAAGTACTATGCAGATTCAGAGCAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT

Protein Analysis

505

Amino Acids

58.53

Weight (kDa)

4.89

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 408 - 480 9.6e-18 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1375
AciI CCGC 1 cut(s) 1319
AclWI GGATC 1 cut(s) 657
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 6 cut(s) 713, 823, 920, 953, 1145, 1234
AcuI CTGAAG 2 cut(s) 1344, 1386
AcyI GRCGYC 1 cut(s) 1206
AfaI GTAC 5 cut(s) 152, 334, 349, 1357, 1493
AfiI CCNNNNNNNGG 1 cut(s) 1375
AflIII ACRYGT 1 cut(s) 585
AjnI CCWGG 2 cut(s) 1368, 1374
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
AloI GAACNNNNNNTCC 2 cut(s) 1331, 1363
AluBI AGCT 7 cut(s) 316, 631, 998, 1100, 1109, 1250, 1460
AluI AGCT 7 cut(s) 316, 631, 998, 1100, 1109, 1250, 1460
Alw21I GWGCWC 2 cut(s) 304, 1462
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 657
AlwNI CAGNNNCTG 2 cut(s) 990, 1375
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 3 cut(s) 701, 998, 1001
ApoI RAATTY 6 cut(s) 713, 823, 920, 953, 1145, 1234
Asp700I GAANNNNTTC 3 cut(s) 222, 281, 1227
AspS9I GGNCC 2 cut(s) 1009, 1372
AvaII GGWCC 2 cut(s) 1009, 1372
BalI TGGCCA 1 cut(s) 72
BanII GRGCYC 1 cut(s) 1462
BarI GAAGNNNNNNTAC 2 cut(s) 1098, 1130
BbsI GAAGAC 1 cut(s) 529
Bbv12I GWGCWC 2 cut(s) 304, 1462
BbvI GCAGC 3 cut(s) 688, 985, 1013
BccI CCATC 2 cut(s) 584, 728
BciT130I CCWGG 2 cut(s) 1370, 1376
BciVI GTATCC 2 cut(s) 319, 1084
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 5 cut(s) 195, 240, 1014, 1034, 1110
BfmI CTRYAG 1 cut(s) 999
BfuI GTATCC 2 cut(s) 319, 1084
BisI GCNGC 3 cut(s) 702, 999, 1002
BlsI GCNGC 3 cut(s) 703, 1000, 1003
BmcAI AGTACT 3 cut(s) 349, 1357, 1493
Bme1390I CCNGG 2 cut(s) 1370, 1376
Bme18I GGWCC 2 cut(s) 1009, 1372
BmgT120I GGNCC 2 cut(s) 1009, 1372
BmiI GGNNCC 2 cut(s) 1011, 1398
BmrFI CCNGG 2 cut(s) 1370, 1376
BmrI ACTGGG 2 cut(s) 573, 978
BmsI GCATC 3 cut(s) 562, 689, 1435
BmuI ACTGGG 2 cut(s) 573, 978
BpiI GAAGAC 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 1087
BsaHI GRCGYC 1 cut(s) 1206
BsaJI CCNNGG 1 cut(s) 810
BsaWI WCCGGW 1 cut(s) 1336
BsaXI ACNNNNNCTCC 2 cut(s) 1331, 1361
Bsc4I CCNNNNNNNGG 1 cut(s) 1375
Bse1I ACTGG 4 cut(s) 309, 568, 984, 1472
Bse3DI GCAATG 2 cut(s) 441, 1011
BseBI CCWGG 2 cut(s) 1370, 1376
BseDI CCNNGG 1 cut(s) 810
BseGI GGATG 4 cut(s) 10, 37, 429, 1480
BseLI CCNNNNNNNGG 1 cut(s) 1375
BseMI GCAATG 2 cut(s) 441, 1011
BseMII CTCAG 3 cut(s) 134, 222, 1475
BseNI ACTGG 4 cut(s) 309, 568, 984, 1472
BseRI GAGGAG 1 cut(s) 1402
BseXI GCAGC 3 cut(s) 688, 985, 1013
BsgI GTGCAG 2 cut(s) 236, 384
BshFI GGCC 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 304, 1462
BsiSI CCGG 1 cut(s) 1337
BslI CCNNNNNNNGG 1 cut(s) 1375
BsmAI GTCTC 1 cut(s) 127
BsnI GGCC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 304, 1462
Bsp143I GATC 3 cut(s) 649, 1174, 1303
BspACI CCGC 1 cut(s) 1319
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 3 cut(s) 133, 223, 1474
BspLI GGNNCC 2 cut(s) 1011, 1398
BspMAI CTGCAG 1 cut(s) 1003
BspPI GGATC 1 cut(s) 657
BsrDI GCAATG 2 cut(s) 441, 1011
BsrI ACTGG 4 cut(s) 309, 568, 984, 1472
BssECI CCNNGG 1 cut(s) 810
BssMI GATC 3 cut(s) 649, 1174, 1303
BssNI GRCGYC 1 cut(s) 1206
Bst2UI CCWGG 2 cut(s) 1370, 1376
Bst4CI ACNGT 4 cut(s) 481, 992, 1272, 1315
Bst6I CTCTTC 1 cut(s) 1218
BstACI GRCGYC 1 cut(s) 1206
BstC8I GCNNGC 2 cut(s) 251, 1073
BstDEI CTNAG 4 cut(s) 120, 231, 1042, 1461
BstDSI CCRYGG 1 cut(s) 810
BstEII GGTNACC 1 cut(s) 1364
BstF5I GGATG 4 cut(s) 10, 37, 429, 1480
BstKTI GATC 3 cut(s) 652, 1177, 1306
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 3 cut(s) 649, 1174, 1303
BstMWI GCNNNNNNNGC 4 cut(s) 191, 1106, 1325, 1425
BstNI CCWGG 2 cut(s) 1370, 1376
BstNSI RCATGY 5 cut(s) 194, 589, 979, 1075, 1302
BstPI GGTNACC 1 cut(s) 1364
BstSCI CCNGG 2 cut(s) 1368, 1374
BstSFI CTRYAG 1 cut(s) 999
BstV1I GCAGC 3 cut(s) 688, 985, 1013
BstV2I GAAGAC 1 cut(s) 529
BsuI GTATCC 2 cut(s) 319, 1084
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 4 cut(s) 10, 37, 429, 1480
BtsI GCAGTG 1 cut(s) 1517
BtsIMutI CAGTG 3 cut(s) 302, 1268, 1517
Cac8I GCNNGC 2 cut(s) 251, 1073
CaiI CAGNNNCTG 2 cut(s) 990, 1375
Cfr13I GGNCC 2 cut(s) 1009, 1372
CseI GACGC 1 cut(s) 1214
CsiI ACCWGGT 1 cut(s) 1368
Csp6I GTAC 5 cut(s) 151, 333, 348, 1356, 1492
CviJI RGCY 8 cut(s) 72, 316, 631, 998, 1100, 1109, 1250, 1460
CviKI_1 RGCY 8 cut(s) 72, 316, 631, 998, 1100, 1109, 1250, 1460
CviQI GTAC 5 cut(s) 151, 333, 348, 1356, 1492
DdeI CTNAG 4 cut(s) 120, 231, 1042, 1461
DpnI GATC 3 cut(s) 651, 1176, 1305
DpnII GATC 3 cut(s) 649, 1174, 1303
DraI TTTAAA 1 cut(s) 592
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 1218
EarI CTCTTC 1 cut(s) 1218
Ecl136II GAGCTC 1 cut(s) 1460
Eco24I GRGCYC 1 cut(s) 1462
Eco47I GGWCC 2 cut(s) 1009, 1372
Eco53kI GAGCTC 1 cut(s) 1460
Eco57I CTGAAG 2 cut(s) 1344, 1386
Eco91I GGTNACC 1 cut(s) 1364
EcoICRI GAGCTC 1 cut(s) 1460
EcoO109I RGGNCCY 1 cut(s) 1372
EcoO65I GGTNACC 1 cut(s) 1364
EcoRII CCWGG 2 cut(s) 1368, 1374
EcoT38I GRGCYC 1 cut(s) 1462
Fnu4HI GCNGC 3 cut(s) 702, 999, 1002
FokI GGATG 4 cut(s) 17, 44, 436, 1487
FriOI GRGCYC 1 cut(s) 1462
Fsp4HI GCNGC 3 cut(s) 702, 999, 1002
FspBI CTAG 5 cut(s) 195, 240, 1014, 1034, 1110
GluI GCNGC 3 cut(s) 702, 999, 1002
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 1337
HgaI GACGC 1 cut(s) 1214
Hin1I GRCGYC 1 cut(s) 1206
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HinfI GANTC 9 cut(s) 50, 269, 413, 438, 947, 1017, 1139, 1179, 1502
HpaII CCGG 1 cut(s) 1337
Hpy166II GTNNAC 1 cut(s) 691
Hpy188III TCNNGA 4 cut(s) 215, 358, 917, 1034
Hpy8I GTNNAC 1 cut(s) 691
HpyAV CCTTC 2 cut(s) 1410, 1426
HpyCH4III ACNGT 4 cut(s) 481, 992, 1272, 1315
HpyCH4IV ACGT 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 1106, 1325, 1425
HpyF3I CTNAG 4 cut(s) 120, 231, 1042, 1461
HpySE526I ACGT 1 cut(s) 335
Hsp92I GRCGYC 1 cut(s) 1206
Kzo9I GATC 3 cut(s) 649, 1174, 1303
LmnI GCTCC 2 cut(s) 812, 1389
Lsp1109I GCAGC 3 cut(s) 688, 985, 1013
LweI GCATC 3 cut(s) 562, 689, 1435
MabI ACCWGGT 1 cut(s) 1368
MaeI CTAG 5 cut(s) 195, 240, 1014, 1034, 1110
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 7 cut(s) 394, 559, 962, 978, 986, 1113, 1364
MalI GATC 3 cut(s) 651, 1176, 1305
MboI GATC 3 cut(s) 649, 1174, 1303
MboII GAAGA 6 cut(s) 150, 171, 529, 840, 1235, 1454
MhlI GDGCHC 2 cut(s) 304, 1462
MlsI TGGCCA 1 cut(s) 72
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 3 cut(s) 59, 407, 956
MmeI TCCRAC 1 cut(s) 1392
MnlI CCTC 5 cut(s) 477, 618, 896, 1133, 1380
Mox20I TGGCCA 1 cut(s) 72
MroXI GAANNNNTTC 3 cut(s) 222, 281, 1227
MscI TGGCCA 1 cut(s) 72
MseI TTAA 2 cut(s) 591, 1047
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 72
MspI CCGG 1 cut(s) 1337
MspR9I CCNGG 2 cut(s) 1370, 1376
MvaI CCWGG 2 cut(s) 1370, 1376
MwoI GCNNNNNNNGC 4 cut(s) 191, 1106, 1325, 1425
NdeII GATC 3 cut(s) 649, 1174, 1303
NlaIV GGNNCC 2 cut(s) 1011, 1398
NspI RCATGY 5 cut(s) 194, 589, 979, 1075, 1302
PaeI GCATGC 1 cut(s) 1075
PciI ACATGT 1 cut(s) 585
PdmI GAANNNNTTC 3 cut(s) 222, 281, 1227
PfeI GAWTC 6 cut(s) 269, 438, 1017, 1139, 1179, 1502
PflFI GACNNNGTC 2 cut(s) 1029, 1484
PflMI CCANNNNNTGG 1 cut(s) 1375
PfoI TCCNGGA 1 cut(s) 1374
PkrI GCNGC 3 cut(s) 703, 1000, 1003
PleI GAGTC 3 cut(s) 58, 407, 955
PpsI GAGTC 3 cut(s) 58, 407, 955
PpuMI RGGWCCY 1 cut(s) 1372
PscI ACATGT 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 1462
Psp5II RGGWCCY 1 cut(s) 1372
Psp6I CCWGG 2 cut(s) 1368, 1374
PspEI GGTNACC 1 cut(s) 1364
PspGI CCWGG 2 cut(s) 1368, 1374
PspN4I GGNNCC 2 cut(s) 1011, 1398
PspPI GGNCC 2 cut(s) 1009, 1372
PspPPI RGGWCCY 1 cut(s) 1372
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PstI CTGCAG 1 cut(s) 1003
PstNI CAGNNNCTG 2 cut(s) 990, 1375
PsyI GACNNNGTC 2 cut(s) 1029, 1484
RsaI GTAC 5 cut(s) 152, 334, 349, 1357, 1493
RsaNI GTAC 5 cut(s) 151, 333, 348, 1356, 1492
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 1 cut(s) 1462
SaqAI TTAA 2 cut(s) 591, 1047
SatI GCNGC 3 cut(s) 702, 999, 1002
Sau3AI GATC 3 cut(s) 649, 1174, 1303
Sau96I GGNCC 2 cut(s) 1009, 1372
ScaI AGTACT 3 cut(s) 349, 1357, 1493
SchI GAGTC 3 cut(s) 59, 407, 956
ScrFI CCNGG 2 cut(s) 1370, 1376
SduI GDGCHC 2 cut(s) 304, 1462
SexAI ACCWGGT 1 cut(s) 1368
SfaNI GCATC 3 cut(s) 562, 689, 1435
SfcI CTRYAG 1 cut(s) 999
SinI GGWCC 2 cut(s) 1009, 1372
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 1066
SmoI CTYRAG 1 cut(s) 1066
SphI GCATGC 1 cut(s) 1075
SsiI CCGC 1 cut(s) 1319
SspMI CTAG 5 cut(s) 195, 240, 1014, 1034, 1110
SstI GAGCTC 1 cut(s) 1462
StyD4I CCNGG 2 cut(s) 1368, 1374
TaaI ACNGT 4 cut(s) 481, 992, 1272, 1315
TaiI ACGT 1 cut(s) 338
TaqI TCGA 4 cut(s) 459, 950, 1177, 1456
TatI WGTACW 4 cut(s) 150, 347, 1355, 1491
TfiI GAWTC 6 cut(s) 269, 438, 1017, 1139, 1179, 1502
Tru1I TTAA 2 cut(s) 591, 1047
Tru9I TTAA 2 cut(s) 591, 1047
TscAI CASTG 3 cut(s) 309, 1275, 1517
TseI GCWGC 3 cut(s) 701, 998, 1001
TspGWI ACGGA 3 cut(s) 799, 1038, 1487
TspRI CASTG 3 cut(s) 309, 1275, 1517
Tth111I GACNNNGTC 2 cut(s) 1029, 1484
Van91I CCANNNNNTGG 1 cut(s) 1375
VpaK11BI GGWCC 2 cut(s) 1009, 1372
XapI RAATTY 6 cut(s) 713, 823, 920, 953, 1145, 1234
XbaI TCTAGA 1 cut(s) 1033
XceI RCATGY 5 cut(s) 194, 589, 979, 1075, 1302
XmnI GAANNNNTTC 3 cut(s) 222, 281, 1227
XspI CTAG 5 cut(s) 195, 240, 1014, 1034, 1110
ZrmI AGTACT 3 cut(s) 349, 1357, 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.