RchiOBHm_Chr5g0030531

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003938
Physical Location & Seq
Forward (+)
24161840 .. 24162699
860 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30986

Sequence Viewer

Length: 840 bp
ATGAACTTTCTGAAAGTATTTCGCTCCGTGGCACTCTCAAATTCGAAGGTTTATTTGCCCACATCTTCTGGTGGTCTTTTTATTTTGAGATATATTAGCAAGTGTTTTGATAAACACAGAGGTCATTCAATTCCAGAATTTACAGCAGTTTATGAAATAATGGAGTCGAAATTCAAAAGTTACTGCGAGTCCATGTTACCCAGTTACTGTTTAGCTGCAGCAATGGACCCTAGATTCAACGGACAGGGTCTAGATTTCTTAGTTAAAGACATTTCTGAATACTTGAGCATGCTATTGTTGAATATGGATACAAAAGCTATTGAAGCTAGGTTACATGACCTCTACAAAGGTTATGAATCCAAATTTGCAGAAAAAGAAAAACCCACTTCTGATCGAATCCCAAAACGAAAGAGATTTGATGACAGTGATGAAAGTGCTGTCGAAAAGTTTCTAGAATGGAGGAGACAGAAGGAAATAAAGACCTATGGGCCAACTGAGCTTCATAAATACTTGGGAGTTAACCATACAGCCTATATGACCAATGAAGAGTTTCAGAATTTTGATGTTTTAGCTTGGTGGAAAGACAATGCACTGTCATTTCCTGTGCTTTCAAAAATGGCATGTGATCTACTAACGGTTGCGGTGTCTGCAATAGCACCGGAGTTTGTGTTCAGTAGTACTTCAGGTAACCAGGTCCTGGACTATAAGAGGAGCATGGAACCTTCAGAAATGTTGGACTGCCTTTTCTGCATGAAGGATTGGGAAGATGCACGACTTCGAGCTCAGAACTGGACGGATGATGACATGGTCAAGTACTATGCAGATTCAGAGCAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT

Protein Analysis

279

Amino Acids

32.41

Weight (kDa)

5.52

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 167 - 254 1.5e-18 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 697
AciI CCGC 1 cut(s) 641
AcsI RAATTY 5 cut(s) 40, 137, 170, 362, 556
AcuI CTGAAG 2 cut(s) 666, 708
AfaI GTAC 2 cut(s) 679, 815
AfiI CCNNNNNNNGG 1 cut(s) 697
AgsI TTSAA 6 cut(s) 129, 175, 238, 301, 323, 612
AjnI CCWGG 2 cut(s) 690, 696
AloI GAACNNNNNNTCC 2 cut(s) 653, 685
AluBI AGCT 6 cut(s) 215, 317, 326, 499, 572, 782
AluI AGCT 6 cut(s) 215, 317, 326, 499, 572, 782
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 1 cut(s) 457
AlwNI CAGNNNCTG 2 cut(s) 207, 697
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 2 cut(s) 215, 218
ApoI RAATTY 5 cut(s) 40, 137, 170, 362, 556
Asp700I GAANNNNTTC 2 cut(s) 447, 549
AspS9I GGNCC 3 cut(s) 226, 488, 694
AsuII TTCGAA 1 cut(s) 44
AvaII GGWCC 2 cut(s) 226, 694
BanII GRGCYC 1 cut(s) 784
BarI GAAGNNNNNNTAC 2 cut(s) 315, 347
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 2 cut(s) 202, 230
BciT130I CCWGG 2 cut(s) 692, 698
BciVI GTATCC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 4 cut(s) 231, 251, 327, 452
BfmI CTRYAG 1 cut(s) 216
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 2 cut(s) 216, 219
BlsI GCNGC 2 cut(s) 217, 220
BmcAI AGTACT 2 cut(s) 679, 815
Bme1390I CCNGG 2 cut(s) 692, 698
Bme18I GGWCC 2 cut(s) 226, 694
BmgT120I GGNCC 3 cut(s) 226, 488, 694
BmiI GGNNCC 2 cut(s) 228, 720
BmrFI CCNGG 2 cut(s) 692, 698
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 757
BmuI ACTGGG 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 658
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 201, 794
Bse3DI GCAATG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 692, 698
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 802
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 486, 797
BseNI ACTGG 2 cut(s) 201, 794
BseRI GAGGAG 2 cut(s) 475, 724
BseXI GCAGC 2 cut(s) 202, 230
BshFI GGCC 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 1 cut(s) 659
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 1 cut(s) 457
BsnI GGCC 1 cut(s) 490
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 2 cut(s) 391, 625
BspACI CCGC 1 cut(s) 641
BspANI GGCC 1 cut(s) 490
BspCNI CTCAG 2 cut(s) 487, 796
BspLI GGNNCC 2 cut(s) 228, 720
BspMAI CTGCAG 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 2 cut(s) 201, 794
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 391, 625
Bst2UI CCWGG 2 cut(s) 692, 698
Bst4CI ACNGT 4 cut(s) 209, 425, 594, 637
Bst6I CTCTTC 1 cut(s) 540
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 3 cut(s) 259, 495, 783
BstDSI CCRYGG 1 cut(s) 27
BstEII GGTNACC 1 cut(s) 686
BstF5I GGATG 1 cut(s) 802
BstKTI GATC 2 cut(s) 394, 628
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 2 cut(s) 391, 625
BstMWI GCNNNNNNNGC 4 cut(s) 323, 496, 647, 747
BstNI CCWGG 2 cut(s) 692, 698
BstNSI RCATGY 2 cut(s) 292, 624
BstPI GGTNACC 1 cut(s) 686
BstSCI CCNGG 2 cut(s) 690, 696
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 202, 230
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 490
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 802
BtsI GCAGTG 1 cut(s) 839
BtsIMutI CAGTG 3 cut(s) 430, 590, 839
Cac8I GCNNGC 1 cut(s) 290
CaiI CAGNNNCTG 2 cut(s) 207, 697
Cfr13I GGNCC 3 cut(s) 226, 488, 694
CsiI ACCWGGT 1 cut(s) 690
Csp6I GTAC 2 cut(s) 678, 814
CviAII CATG 7 cut(s) 193, 289, 335, 621, 715, 751, 805
CviJI RGCY 8 cut(s) 215, 317, 326, 490, 499, 530, 572, 782
CviKI_1 RGCY 8 cut(s) 215, 317, 326, 490, 499, 530, 572, 782
CviQI GTAC 2 cut(s) 678, 814
DdeI CTNAG 3 cut(s) 259, 495, 783
DpnI GATC 2 cut(s) 393, 627
DpnII GATC 2 cut(s) 391, 625
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 782
Eco24I GRGCYC 1 cut(s) 784
Eco47I GGWCC 2 cut(s) 226, 694
Eco53kI GAGCTC 1 cut(s) 782
Eco57I CTGAAG 2 cut(s) 666, 708
Eco91I GGTNACC 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 782
EcoO109I RGGNCCY 1 cut(s) 694
EcoO65I GGTNACC 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 690, 696
EcoT38I GRGCYC 1 cut(s) 784
FaeI CATG 7 cut(s) 196, 292, 338, 624, 718, 754, 808
FatI CATG 7 cut(s) 192, 288, 334, 620, 714, 750, 804
Fnu4HI GCNGC 2 cut(s) 216, 219
FokI GGATG 1 cut(s) 809
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 2 cut(s) 216, 219
FspBI CTAG 4 cut(s) 231, 251, 327, 452
GluI GCNGC 2 cut(s) 216, 219
HaeIII GGCC 1 cut(s) 490
HapII CCGG 1 cut(s) 659
Hin1II CATG 7 cut(s) 196, 292, 338, 624, 718, 754, 808
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 6 cut(s) 164, 188, 234, 356, 396, 824
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 1 cut(s) 659
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 7 cut(s) 12, 277, 391, 555, 727, 786, 829
Hpy188III TCNNGA 3 cut(s) 134, 251, 452
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 4 cut(s) 40, 463, 732, 748
HpyCH4III ACNGT 4 cut(s) 209, 425, 594, 637
HpyCH4V TGCA 7 cut(s) 218, 368, 590, 650, 750, 770, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 496, 647, 747
HpyF3I CTNAG 3 cut(s) 259, 495, 783
Hsp92II CATG 7 cut(s) 196, 292, 338, 624, 718, 754, 808
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 2 cut(s) 391, 625
LmnI GCTCC 2 cut(s) 29, 711
Lsp1109I GCAGC 2 cut(s) 202, 230
LweI GCATC 1 cut(s) 757
MabI ACCWGGT 1 cut(s) 690
MaeI CTAG 4 cut(s) 231, 251, 327, 452
MaeIII GTNAC 5 cut(s) 179, 195, 203, 330, 686
MalI GATC 2 cut(s) 393, 627
MboI GATC 2 cut(s) 391, 625
MboII GAAGA 3 cut(s) 57, 557, 776
MhlI GDGCHC 1 cut(s) 784
MluCI AATT 6 cut(s) 40, 129, 137, 170, 362, 556
MlyI GAGTC 2 cut(s) 173, 197
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 4 cut(s) 113, 350, 453, 702
MroXI GAANNNNTTC 2 cut(s) 447, 549
MseI TTAA 2 cut(s) 264, 519
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 2 cut(s) 692, 698
MvaI CCWGG 2 cut(s) 692, 698
MwoI GCNNNNNNNGC 4 cut(s) 323, 496, 647, 747
NdeII GATC 2 cut(s) 391, 625
NlaIII CATG 7 cut(s) 196, 292, 338, 624, 718, 754, 808
NlaIV GGNNCC 2 cut(s) 228, 720
NspI RCATGY 2 cut(s) 292, 624
NspV TTCGAA 1 cut(s) 44
PaeI GCATGC 1 cut(s) 292
PdmI GAANNNNTTC 2 cut(s) 447, 549
PfeI GAWTC 4 cut(s) 234, 356, 396, 824
PflFI GACNNNGTC 2 cut(s) 246, 806
PflMI CCANNNNNTGG 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 696
PkrI GCNGC 2 cut(s) 217, 220
PleI GAGTC 2 cut(s) 172, 196
PpsI GAGTC 2 cut(s) 172, 196
PpuMI RGGWCCY 1 cut(s) 694
Psp124BI GAGCTC 1 cut(s) 784
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 2 cut(s) 690, 696
PspEI GGTNACC 1 cut(s) 686
PspGI CCWGG 2 cut(s) 690, 696
PspN4I GGNNCC 2 cut(s) 228, 720
PspPI GGNCC 3 cut(s) 226, 488, 694
PspPPI RGGWCCY 1 cut(s) 694
PstI CTGCAG 1 cut(s) 220
PstNI CAGNNNCTG 2 cut(s) 207, 697
PsyI GACNNNGTC 2 cut(s) 246, 806
RsaI GTAC 2 cut(s) 679, 815
RsaNI GTAC 2 cut(s) 678, 814
SacI GAGCTC 1 cut(s) 784
SaqAI TTAA 2 cut(s) 264, 519
SatI GCNGC 2 cut(s) 216, 219
Sau3AI GATC 2 cut(s) 391, 625
Sau96I GGNCC 3 cut(s) 226, 488, 694
ScaI AGTACT 2 cut(s) 679, 815
SchI GAGTC 2 cut(s) 173, 197
ScrFI CCNGG 2 cut(s) 692, 698
SduI GDGCHC 1 cut(s) 784
SexAI ACCWGGT 1 cut(s) 690
SfaNI GCATC 1 cut(s) 757
SfcI CTRYAG 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 44
SinI GGWCC 2 cut(s) 226, 694
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SphI GCATGC 1 cut(s) 292
Sse9I AATT 6 cut(s) 40, 129, 137, 170, 362, 556
SsiI CCGC 1 cut(s) 641
SspMI CTAG 4 cut(s) 231, 251, 327, 452
SstI GAGCTC 1 cut(s) 784
StyD4I CCNGG 2 cut(s) 690, 696
TaaI ACNGT 4 cut(s) 209, 425, 594, 637
TaqI TCGA 5 cut(s) 44, 167, 394, 441, 778
TasI AATT 6 cut(s) 40, 129, 137, 170, 362, 556
TatI WGTACW 2 cut(s) 677, 813
TfiI GAWTC 4 cut(s) 234, 356, 396, 824
Tru1I TTAA 2 cut(s) 264, 519
Tru9I TTAA 2 cut(s) 264, 519
TscAI CASTG 3 cut(s) 430, 597, 839
TseI GCWGC 2 cut(s) 215, 218
TspDTI ATGAA 7 cut(s) 17, 168, 369, 444, 491, 558, 767
TspGWI ACGGA 3 cut(s) 16, 255, 809
TspRI CASTG 3 cut(s) 430, 597, 839
Tth111I GACNNNGTC 2 cut(s) 246, 806
Van91I CCANNNNNTGG 1 cut(s) 697
VpaK11BI GGWCC 2 cut(s) 226, 694
XapI RAATTY 5 cut(s) 40, 137, 170, 362, 556
XbaI TCTAGA 2 cut(s) 250, 451
XceI RCATGY 2 cut(s) 292, 624
XmnI GAANNNNTTC 2 cut(s) 447, 549
XspI CTAG 4 cut(s) 231, 251, 327, 452
ZrmI AGTACT 2 cut(s) 679, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.