hAT family C-terminal dimerisation region
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g15281 FvH4_6g23002 |
| prunus_persica | Prupe.7G011700_v2.0.a1 Prupe.8G060700_v2.0.a1 |
| pyrus_communis | pycom11g23400 pycom11g23410 |
| rosa_chinensis | RchiOBHm_Chr3g0493121 RchiOBHm_Chr4g0416701 RchiOBHm_Chr5g0030191 RchiOBHm_Chr5g0030261 RchiOBHm_Chr5g0030451 RchiOBHm_Chr5g0030531 |
| rosa_laevigata | RLG00000004075 RLG00000009332 RLG00000033223 |
| rosa_roxburghii | Rroxscaffold_1G00012180 Rroxscaffold_3G00221970 Rroxscaffold_5G00352040 Rroxscaffold_5G00352700 Rroxscaffold_5G00366920 Rroxscaffold_6G00401320 Rroxscaffold_7G00214040 |
| rosa_rugosa | Rorug05G0118200 Rorug05G0244100 Rorug05G0431600 |
| rosa_samantha | Rh2AG303900 Rh5BG493400 Rh5CG358400 Rh5CG517400 Rh5DG213900 Rh6BG199100 Rh7DG307600 |
| rosa_wichuraiana | Rw5G019230 Rw6G002650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1925 |
| Acc36I | ACCTGC | 1 cut(s) | 1925 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 779 |
| AclWI | GGATC | 3 cut(s) | 12, 1478, 1491 |
| AcsI | RAATTY | 7 cut(s) | 542, 767, 928, 1527, 1537, 1778, 1787 |
| AcuI | CTGAAG | 2 cut(s) | 186, 1773 |
| AcvI | CACGTG | 1 cut(s) | 1880 |
| AdeI | CACNNNGTG | 1 cut(s) | 1646 |
| AfaI | GTAC | 5 cut(s) | 319, 425, 1630, 1750, 1887 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 779, 920, 923 |
| AflIII | ACRYGT | 4 cut(s) | 663, 901, 1289, 1388 |
| AleI | CACNNNNGTG | 1 cut(s) | 1996 |
| AluBI | AGCT | 7 cut(s) | 434, 455, 1006, 1050, 1637, 1694, 1913 |
| AluI | AGCT | 7 cut(s) | 434, 455, 1006, 1050, 1637, 1694, 1913 |
| Alw21I | GWGCWC | 1 cut(s) | 1651 |
| Alw26I | GTCTC | 3 cut(s) | 245, 390, 1089 |
| AlwI | GGATC | 3 cut(s) | 12, 1478, 1491 |
| Ama87I | CYCGRG | 1 cut(s) | 9 |
| ApeKI | GCWGC | 2 cut(s) | 1057, 1691 |
| ApoI | RAATTY | 7 cut(s) | 542, 767, 928, 1527, 1537, 1778, 1787 |
| AseI | ATTAAT | 2 cut(s) | 963, 1353 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 412, 1583 |
| AsuHPI | GGTGA | 2 cut(s) | 41, 1064 |
| AsuII | TTCGAA | 2 cut(s) | 510, 2029 |
| AsuNHI | GCTAGC | 1 cut(s) | 1712 |
| AvaI | CYCGRG | 1 cut(s) | 9 |
| BamHI | GGATCC | 2 cut(s) | 4, 1483 |
| BbrPI | CACGTG | 1 cut(s) | 1880 |
| BbsI | GAAGAC | 2 cut(s) | 752, 1586 |
| Bbv12I | GWGCWC | 1 cut(s) | 1651 |
| BbvI | GCAGC | 2 cut(s) | 1069, 1703 |
| BccI | CCATC | 2 cut(s) | 665, 974 |
| BciVI | GTATCC | 1 cut(s) | 1765 |
| BclI | TGATCA | 1 cut(s) | 169 |
| BcoDI | GTCTC | 3 cut(s) | 245, 390, 1089 |
| BfaI | CTAG | 6 cut(s) | 378, 456, 1044, 1053, 1683, 1713 |
| BfuAI | ACCTGC | 1 cut(s) | 1925 |
| BfuI | GTATCC | 1 cut(s) | 1765 |
| BglII | AGATCT | 1 cut(s) | 2053 |
| BisI | GCNGC | 2 cut(s) | 1058, 1692 |
| BlsI | GCNGC | 2 cut(s) | 1059, 1693 |
| BmcAI | AGTACT | 1 cut(s) | 425 |
| BmeT110I | CYCGRG | 1 cut(s) | 9 |
| BmiI | GGNNCC | 2 cut(s) | 6, 1485 |
| BmrI | ACTGGG | 1 cut(s) | 330 |
| BmsI | GCATC | 4 cut(s) | 334, 1012, 1273, 2008 |
| BmtI | GCTAGC | 1 cut(s) | 1716 |
| BmuI | ACTGGG | 1 cut(s) | 330 |
| BpiI | GAAGAC | 2 cut(s) | 752, 1586 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1957, 1989 |
| Bpu14I | TTCGAA | 2 cut(s) | 510, 2029 |
| BpuEI | CTTGAG | 2 cut(s) | 138, 414 |
| BsaAI | YACGTR | 2 cut(s) | 1290, 1880 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2052 |
| BsaWI | WCCGGW | 1 cut(s) | 1897 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 779, 920, 923 |
| Bse1I | ACTGG | 3 cut(s) | 325, 409, 784 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2052 |
| BseGI | GGATG | 5 cut(s) | 676, 910, 1027, 1119, 1234 |
| BseJI | GATNNNNATC | 1 cut(s) | 2052 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 779, 920, 923 |
| BseMII | CTCAG | 2 cut(s) | 168, 1788 |
| BseNI | ACTGG | 3 cut(s) | 325, 409, 784 |
| BseRI | GAGGAG | 1 cut(s) | 1965 |
| BseXI | GCAGC | 2 cut(s) | 1069, 1703 |
| BseYI | CCCAGC | 1 cut(s) | 1002 |
| BsgI | GTGCAG | 2 cut(s) | 1710, 1953 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1651 |
| BsiHKCI | CYCGRG | 1 cut(s) | 9 |
| BsiSI | CCGG | 1 cut(s) | 1898 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 779, 920, 923 |
| BsmAI | GTCTC | 3 cut(s) | 245, 390, 1089 |
| BsoBI | CYCGRG | 1 cut(s) | 9 |
| Bsp119I | TTCGAA | 2 cut(s) | 510, 2029 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1651 |
| Bsp143I | GATC | 4 cut(s) | 4, 169, 1483, 2053 |
| BspCNI | CTCAG | 2 cut(s) | 169, 1789 |
| BspHI | TCATGA | 1 cut(s) | 1336 |
| BspLI | GGNNCC | 2 cut(s) | 6, 1485 |
| BspMI | ACCTGC | 1 cut(s) | 1925 |
| BspOI | GCTAGC | 1 cut(s) | 1716 |
| BspPI | GGATC | 3 cut(s) | 12, 1478, 1491 |
| BspT104I | TTCGAA | 2 cut(s) | 510, 2029 |
| BsrI | ACTGG | 3 cut(s) | 325, 409, 784 |
| BssMI | GATC | 4 cut(s) | 4, 169, 1483, 2053 |
| Bst4CI | ACNGT | 3 cut(s) | 1298, 1657, 1909 |
| Bst6I | CTCTTC | 2 cut(s) | 418, 1227 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 121 |
| BstBAI | YACGTR | 2 cut(s) | 1290, 1880 |
| BstBI | TTCGAA | 2 cut(s) | 510, 2029 |
| BstC8I | GCNNGC | 3 cut(s) | 126, 1710, 1714 |
| BstDEI | CTNAG | 2 cut(s) | 177, 1797 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 921 |
| BstF5I | GGATG | 5 cut(s) | 676, 910, 1027, 1119, 1234 |
| BstKTI | GATC | 4 cut(s) | 7, 172, 1486, 2056 |
| BstMAI | GTCTC | 3 cut(s) | 245, 390, 1089 |
| BstMBI | GATC | 4 cut(s) | 4, 169, 1483, 2053 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 121, 1364, 1931 |
| BstNSI | RCATGY | 9 cut(s) | 76, 128, 293, 351, 471, 667, 905, 1153, 1392 |
| BstV1I | GCAGC | 2 cut(s) | 1069, 1703 |
| BstV2I | GAAGAC | 2 cut(s) | 752, 1586 |
| BstX2I | RGATCY | 3 cut(s) | 4, 1483, 2053 |
| BstYI | RGATCY | 3 cut(s) | 4, 1483, 2053 |
| BsuI | GTATCC | 1 cut(s) | 1765 |
| BtsCI | GGATG | 5 cut(s) | 676, 910, 1027, 1119, 1234 |
| BveI | ACCTGC | 1 cut(s) | 1925 |
| Cac8I | GCNNGC | 3 cut(s) | 126, 1710, 1714 |
| CciI | TCATGA | 1 cut(s) | 1336 |
| Csp6I | GTAC | 5 cut(s) | 318, 424, 1629, 1749, 1886 |
| CviQI | GTAC | 5 cut(s) | 318, 424, 1629, 1749, 1886 |
| DdeI | CTNAG | 2 cut(s) | 177, 1797 |
| DpnI | GATC | 4 cut(s) | 6, 171, 1485, 2055 |
| DpnII | GATC | 4 cut(s) | 4, 169, 1483, 2053 |
| DraI | TTTAAA | 3 cut(s) | 223, 636, 898 |
| DraIII | CACNNNGTG | 1 cut(s) | 1646 |
| Eam1104I | CTCTTC | 2 cut(s) | 418, 1227 |
| EarI | CTCTTC | 2 cut(s) | 418, 1227 |
| Eco57I | CTGAAG | 2 cut(s) | 186, 1773 |
| Eco72I | CACGTG | 1 cut(s) | 1880 |
| Eco88I | CYCGRG | 1 cut(s) | 9 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 921 |
| EcoT22I | ATGCAT | 2 cut(s) | 126, 349 |
| FauNDI | CATATG | 1 cut(s) | 939 |
| FbaI | TGATCA | 1 cut(s) | 169 |
| Fnu4HI | GCNGC | 2 cut(s) | 1058, 1692 |
| FokI | GGATG | 5 cut(s) | 683, 897, 1034, 1106, 1241 |
| Fsp4HI | GCNGC | 2 cut(s) | 1058, 1692 |
| FspBI | CTAG | 6 cut(s) | 378, 456, 1044, 1053, 1683, 1713 |
| GluI | GCNGC | 2 cut(s) | 1058, 1692 |
| GsaI | CCCAGC | 1 cut(s) | 1006 |
| HapII | CCGG | 1 cut(s) | 1898 |
| HinfI | GANTC | 4 cut(s) | 143, 408, 1450, 1919 |
| HpaII | CCGG | 1 cut(s) | 1898 |
| HphI | GGTGA | 2 cut(s) | 41, 1064 |
| Hpy166II | GTNNAC | 3 cut(s) | 1261, 1553, 1905 |
| Hpy188I | TCNGA | 5 cut(s) | 205, 661, 1317, 1578, 1918 |
| Hpy188III | TCNNGA | 7 cut(s) | 11, 65, 140, 155, 764, 1337, 1533 |
| Hpy8I | GTNNAC | 3 cut(s) | 1261, 1553, 1905 |
| HpyAV | CCTTC | 1 cut(s) | 1999 |
| HpyCH4III | ACNGT | 3 cut(s) | 1298, 1657, 1909 |
| HpyCH4IV | ACGT | 2 cut(s) | 1289, 1879 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 121, 1364, 1931 |
| HpyF3I | CTNAG | 2 cut(s) | 177, 1797 |
| HpySE526I | ACGT | 2 cut(s) | 1289, 1879 |
| Ksp22I | TGATCA | 1 cut(s) | 169 |
| Kzo9I | GATC | 4 cut(s) | 4, 169, 1483, 2053 |
| LmnI | GCTCC | 2 cut(s) | 112, 1654 |
| Lsp1109I | GCAGC | 2 cut(s) | 1069, 1703 |
| LweI | GCATC | 4 cut(s) | 334, 1012, 1273, 2008 |
| MaeI | CTAG | 6 cut(s) | 378, 456, 1044, 1053, 1683, 1713 |
| MaeII | ACGT | 2 cut(s) | 1289, 1879 |
| MaeIII | GTNAC | 4 cut(s) | 230, 652, 1169, 1292 |
| MalI | GATC | 4 cut(s) | 6, 171, 1485, 2055 |
| MboI | GATC | 4 cut(s) | 4, 169, 1483, 2053 |
| MfeI | CAATTG | 1 cut(s) | 1010 |
| MflI | RGATCY | 3 cut(s) | 4, 1483, 2053 |
| MhlI | GDGCHC | 1 cut(s) | 1651 |
| MlyI | GAGTC | 1 cut(s) | 1928 |
| MmeI | TCCRAC | 3 cut(s) | 1112, 1340, 1676 |
| Mph1103I | ATGCAT | 2 cut(s) | 126, 349 |
| MroXI | GAANNNNTTC | 2 cut(s) | 412, 1583 |
| MslI | CAYNNNNRTG | 3 cut(s) | 342, 372, 1996 |
| MspI | CCGG | 1 cut(s) | 1898 |
| MunI | CAATTG | 1 cut(s) | 1010 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 121, 1364, 1931 |
| NdeI | CATATG | 1 cut(s) | 939 |
| NdeII | GATC | 4 cut(s) | 4, 169, 1483, 2053 |
| NheI | GCTAGC | 1 cut(s) | 1712 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 1485 |
| NmuCI | GTSAC | 2 cut(s) | 230, 652 |
| NsiI | ATGCAT | 2 cut(s) | 126, 349 |
| NspI | RCATGY | 9 cut(s) | 76, 128, 293, 351, 471, 667, 905, 1153, 1392 |
| NspV | TTCGAA | 2 cut(s) | 510, 2029 |
| OliI | CACNNNNGTG | 1 cut(s) | 1996 |
| PaeI | GCATGC | 1 cut(s) | 128 |
| PaeR7I | CTCGAG | 1 cut(s) | 9 |
| PagI | TCATGA | 1 cut(s) | 1336 |
| PaqCI | CACCTGC | 1 cut(s) | 1925 |
| PciI | ACATGT | 3 cut(s) | 663, 901, 1388 |
| PdmI | GAANNNNTTC | 2 cut(s) | 412, 1583 |
| PfeI | GAWTC | 3 cut(s) | 143, 408, 1450 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 779 |
| PkrI | GCNGC | 2 cut(s) | 1059, 1693 |
| PleI | GAGTC | 1 cut(s) | 1927 |
| PmaCI | CACGTG | 1 cut(s) | 1880 |
| PmlI | CACGTG | 1 cut(s) | 1880 |
| PpsI | GAGTC | 1 cut(s) | 1927 |
| Ppu21I | YACGTR | 2 cut(s) | 1290, 1880 |
| PscI | ACATGT | 3 cut(s) | 663, 901, 1388 |
| PshBI | ATTAAT | 2 cut(s) | 963, 1353 |
| PspCI | CACGTG | 1 cut(s) | 1880 |
| PspFI | CCCAGC | 1 cut(s) | 1002 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 1485 |
| PsuI | RGATCY | 3 cut(s) | 4, 1483, 2053 |
| RsaI | GTAC | 5 cut(s) | 319, 425, 1630, 1750, 1887 |
| RsaNI | GTAC | 5 cut(s) | 318, 424, 1629, 1749, 1886 |
| RseI | CAYNNNNRTG | 3 cut(s) | 342, 372, 1996 |
| SatI | GCNGC | 2 cut(s) | 1058, 1692 |
| Sau3AI | GATC | 4 cut(s) | 4, 169, 1483, 2053 |
| ScaI | AGTACT | 1 cut(s) | 425 |
| SchI | GAGTC | 1 cut(s) | 1928 |
| SduI | GDGCHC | 1 cut(s) | 1651 |
| SfaNI | GCATC | 4 cut(s) | 334, 1012, 1273, 2008 |
| Sfr274I | CTCGAG | 1 cut(s) | 9 |
| SfuI | TTCGAA | 2 cut(s) | 510, 2029 |
| SlaI | CTCGAG | 1 cut(s) | 9 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 342, 372, 1996 |
| SmlI | CTYRAG | 3 cut(s) | 9, 153, 429 |
| SmoI | CTYRAG | 3 cut(s) | 9, 153, 429 |
| SphI | GCATGC | 1 cut(s) | 128 |
| SspI | AATATT | 5 cut(s) | 843, 1405, 1518, 1573, 1822 |
| SspMI | CTAG | 6 cut(s) | 378, 456, 1044, 1053, 1683, 1713 |
| TaaI | ACNGT | 3 cut(s) | 1298, 1657, 1909 |
| TaiI | ACGT | 2 cut(s) | 1292, 1882 |
| TaqI | TCGA | 3 cut(s) | 10, 510, 2029 |
| TatI | WGTACW | 2 cut(s) | 423, 1885 |
| TfiI | GAWTC | 3 cut(s) | 143, 408, 1450 |
| TseFI | GTSAC | 2 cut(s) | 230, 652 |
| TseI | GCWGC | 2 cut(s) | 1057, 1691 |
| Tsp45I | GTSAC | 2 cut(s) | 230, 652 |
| TspGWI | ACGGA | 2 cut(s) | 936, 1112 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 779 |
| VspI | ATTAAT | 2 cut(s) | 963, 1353 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 921 |
| XapI | RAATTY | 7 cut(s) | 542, 767, 928, 1527, 1537, 1778, 1787 |
| XceI | RCATGY | 9 cut(s) | 76, 128, 293, 351, 471, 667, 905, 1153, 1392 |
| XhoI | CTCGAG | 1 cut(s) | 9 |
| XmnI | GAANNNNTTC | 2 cut(s) | 412, 1583 |
| XspI | CTAG | 6 cut(s) | 378, 456, 1044, 1053, 1683, 1713 |
| ZrmI | AGTACT | 1 cut(s) | 425 |
| Zsp2I | ATGCAT | 2 cut(s) | 126, 349 |