RchiOBHm_Chr5g0030191

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003938
Physical Location & Seq
Forward (+)
23936403 .. 23936780
378 bp
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UTR
Exon/CDS
Intron
PRQ30952

Sequence Viewer

Length: 300 bp
ATGACCAATGAAGAGTTTCAGAATTTTGATGTTTTAGCTTGGTGGAAAGACAATGCACTGTCATTTCCTGTGCTTTCAAAAATGGCATGTGAGCTACTAACGGTTTCGGTGTCTGCAATAGCACCGGAGTTTGTGTTCAGTAGTACTTCAGGTAACCAGGTCCTGGACTATAAGAGGAGTATGGAACCTTCAGAAATGTTGGACTGCCTTTTCTGCATGAAGGATTGGGAAGATGCACGACTTCGAGCTCAGAACTGGACGGATGATGATATGGTCGAGTACTATGCAGATTCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT

Protein Analysis

99

Amino Acids

11.5

Weight (kDa)

4.08

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 7 - 76 4.5e-18 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 163
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 2 cut(s) 132, 174
AfaI GTAC 2 cut(s) 145, 281
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 78
AjnI CCWGG 2 cut(s) 156, 162
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 38, 94, 248
AluI AGCT 3 cut(s) 38, 94, 248
Alw21I GWGCWC 1 cut(s) 250
AlwNI CAGNNNCTG 1 cut(s) 163
ApoI RAATTY 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 160
AvaII GGWCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 172, 204
Bbv12I GWGCWC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 2 cut(s) 158, 164
BmcAI AGTACT 2 cut(s) 145, 281
Bme1390I CCNGG 2 cut(s) 158, 164
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 158, 164
BmsI GCATC 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 260
BseBI CCWGG 2 cut(s) 158, 164
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 260
Bst2UI CCWGG 2 cut(s) 158, 164
Bst4CI ACNGT 2 cut(s) 60, 103
Bst6I CTCTTC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 249
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 2 cut(s) 158, 164
BstNSI RCATGY 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 156, 162
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 56
CaiI CAGNNNCTG 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 160
CsiI ACCWGGT 1 cut(s) 156
Csp6I GTAC 2 cut(s) 144, 280
CviAII CATG 2 cut(s) 87, 217
CviJI RGCY 3 cut(s) 38, 94, 248
CviKI_1 RGCY 3 cut(s) 38, 94, 248
CviQI GTAC 2 cut(s) 144, 280
DdeI CTNAG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 248
Eco57I CTGAAG 2 cut(s) 132, 174
Eco91I GGTNACC 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 156, 162
EcoT38I GRGCYC 1 cut(s) 250
FaeI CATG 2 cut(s) 90, 220
FaiI YATR 6 cut(s) 88, 171, 182, 218, 272, 285
FatI CATG 2 cut(s) 86, 216
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 250
HapII CCGG 1 cut(s) 125
Hin1II CATG 2 cut(s) 90, 220
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 125
Hpy188I TCNGA 4 cut(s) 21, 193, 252, 295
HpyAV CCTTC 2 cut(s) 198, 214
HpyCH4III ACNGT 2 cut(s) 60, 103
HpyCH4V TGCA 5 cut(s) 56, 116, 216, 236, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 2 cut(s) 90, 220
LpnPI CCDG 8 cut(s) 81, 135, 138, 143, 149, 170, 176, 241
LweI GCATC 1 cut(s) 223
MabI ACCWGGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 152
MboII GAAGA 2 cut(s) 23, 242
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 15
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 158, 164
MvaI CCWGG 2 cut(s) 158, 164
MwoI GCNNNNNNNGC 1 cut(s) 213
NlaIII CATG 2 cut(s) 90, 220
NlaIV GGNNCC 1 cut(s) 186
NspI RCATGY 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 156, 162
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 156, 162
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 160
PspPPI RGGWCCY 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 163
RsaI GTAC 2 cut(s) 145, 281
RsaNI GTAC 2 cut(s) 144, 280
SacI GAGCTC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 160
ScaI AGTACT 2 cut(s) 145, 281
ScrFI CCNGG 2 cut(s) 158, 164
SduI GDGCHC 1 cut(s) 250
SetI ASST 6 cut(s) 40, 96, 154, 162, 190, 250
SexAI ACCWGGT 1 cut(s) 156
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 1 cut(s) 160
Sse9I AATT 1 cut(s) 22
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 2 cut(s) 156, 162
TaaI ACNGT 2 cut(s) 60, 103
TaqI TCGA 2 cut(s) 244, 276
TasI AATT 1 cut(s) 22
TatI WGTACW 2 cut(s) 143, 279
TfiI GAWTC 1 cut(s) 290
TscAI CASTG 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 24, 233
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 15
ZrmI AGTACT 2 cut(s) 145, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.