Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003938

Physical Location & Seq

Genomic Coordinates Reverse (-)

16731845 .. 16732724

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23002.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCTTCATCATTGAATTTGTACTCAATCACCTTCTTAACGCCGTTCTCGTTAGGTCCGATCACCTCCTTCGGCGGCAGAAGAAAGTCCAGATCACCGTCCTCCTCATCTAGCTCTCCCCACCGGGGCTTTGCAGTCCATGTTGTTGTTTTATGTTTGAGTCTCTTTGCTCGTGTTGGTGTTTTGTTTTACTTAGATATGGATGATGAGGATGATTTGAATTTGGGTGAGTACTATGATAATAGAGATTTATTTCCACAACCAGACGTTGAGAATATGGCATGTGAGTCTTTGAGTTCAGGCGAATCACAACCCTCATCTCCAAATGATAACAGCCAACCTATTGAGGTTGGCACTGAACCTAATGAGCCTGACATAGAAGAAGTGATCAAAAAAAGAAAACGAACGTCTAGTGTGTGGGATCATTTCAAACTTGAGAAAATTGATGTCAATGGTGGTAATACAGATGAAAGGGCAATATGTAAATTTTGTAAGTCCTCGTTAAGCTGTAAGAGCAGTAACGGTACTGGACATCTTAAGAGGCATGCTAAAAAATGTCTCGAAAAACATCGCTCTAAATATGATCCTACTCAATCTCAATTGAGTAGAAAAGATGATGGTAGTGTGGGCGCATTTAAGTACTCCCACGATAGAATGAGGGAGGGTTTGGCTAAACTTTTAGCTGCTGAGGAATTACCATTCTCATTTGCTGAGAGTCCAAACTTTGAAAGATTTCAAAGAGAGTGTTGCCAACCGGATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-BED

Protein Analysis

255

Amino Acids

28.5

Weight (kDa)

6.01

Isoelectric Point (pI)

63.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003938)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15281 FvH4_6g23002
prunus_persica	Prupe.7G011700_v2.0.a1 Prupe.8G060700_v2.0.a1
pyrus_communis	pycom11g23400 pycom11g23410
rosa_chinensis	RchiOBHm_Chr3g0493121 RchiOBHm_Chr4g0416701 RchiOBHm_Chr5g0030191 RchiOBHm_Chr5g0030261 RchiOBHm_Chr5g0030451 RchiOBHm_Chr5g0030531
rosa_laevigata	RLG00000004075 RLG00000009332 RLG00000033223
rosa_roxburghii	Rroxscaffold_1G00012180 Rroxscaffold_3G00221970 Rroxscaffold_5G00352040 Rroxscaffold_5G00352700 Rroxscaffold_5G00366920 Rroxscaffold_6G00401320 Rroxscaffold_7G00214040
rosa_rugosa	Rorug05G0118200 Rorug05G0244100 Rorug05G0431600
rosa_samantha	Rh2AG303900 Rh5BG493400 Rh5CG358400 Rh5CG517400 Rh5DG213900 Rh6BG199100 Rh7DG307600
rosa_wichuraiana	Rw5G019230 Rw6G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	429, 578
AcsI	RAATTY	3 cut(s)	16, 220, 485
AfaI	GTAC	4 cut(s)	23, 233, 526, 641
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflII	CTTAAG	1 cut(s)	536
AgsI	TTSAA	5 cut(s)	16, 220, 430, 728, 737
AluBI	AGCT	3 cut(s)	114, 507, 683
AluI	AGCT	3 cut(s)	114, 507, 683
Alw26I	GTCTC	2 cut(s)	167, 563
AlwI	GGATC	2 cut(s)	429, 578
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	3 cut(s)	16, 220, 485
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	632
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	4 cut(s)	22, 55, 87, 239
AvaII	GGWCC	1 cut(s)	56
BauI	CACGAG	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	167, 563
BfaI	CTAG	2 cut(s)	111, 411
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	2 cut(s)	76, 684
BlsI	GCNGC	2 cut(s)	77, 685
BmcAI	AGTACT	2 cut(s)	233, 641
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	208, 217
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	2 cut(s)	678, 702
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	124, 755
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	167, 563
Bsp143I	GATC	5 cut(s)	60, 92, 387, 421, 583
BspACI	CCGC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	679, 703
BspPI	GGATC	2 cut(s)	429, 578
BspTI	CTTAAG	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	5 cut(s)	60, 92, 387, 421, 583
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	99, 524
BstAFI	CTTAAG	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	3 cut(s)	193, 687, 711
BstF5I	GGATG	2 cut(s)	208, 217
BstHHI	GCGC	1 cut(s)	632
BstKTI	GATC	5 cut(s)	63, 95, 390, 424, 586
BstMAI	GTCTC	2 cut(s)	167, 563
BstMBI	GATC	5 cut(s)	60, 92, 387, 421, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstNSI	RCATGY	2 cut(s)	285, 548
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	670
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	2 cut(s)	208, 217
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	546
CfoI	GCGC	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	4 cut(s)	22, 232, 525, 640
CviAII	CATG	3 cut(s)	140, 282, 545
CviJI	RGCY	7 cut(s)	114, 129, 336, 370, 507, 671, 683
CviKI_1	RGCY	7 cut(s)	114, 129, 336, 370, 507, 671, 683
CviQI	GTAC	4 cut(s)	22, 232, 525, 640
DdeI	CTNAG	3 cut(s)	193, 687, 711
DpnI	GATC	5 cut(s)	62, 94, 389, 423, 585
DpnII	GATC	5 cut(s)	60, 92, 387, 421, 583
Eco47I	GGWCC	1 cut(s)	56
FaeI	CATG	3 cut(s)	143, 285, 548
FatI	CATG	3 cut(s)	139, 281, 544
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	76, 684
FokI	GGATG	2 cut(s)	215, 224
Fsp4HI	GCNGC	2 cut(s)	76, 684
FspBI	CTAG	2 cut(s)	111, 411
GlaI	GCGC	1 cut(s)	631
GluI	GCNGC	2 cut(s)	76, 684
HapII	CCGG	2 cut(s)	124, 755
HhaI	GCGC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	143, 285, 548
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HinfI	GANTC	4 cut(s)	160, 287, 305, 715
HpaII	CCGG	2 cut(s)	124, 755
HphI	GGTGA	4 cut(s)	22, 55, 87, 239
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	2 cut(s)	90, 560
HpyAV	CCTTC	3 cut(s)	15, 43, 79
HpyCH4III	ACNGT	2 cut(s)	99, 524
HpyCH4IV	ACGT	2 cut(s)	267, 407
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	3 cut(s)	193, 687, 711
HpySE526I	ACGT	2 cut(s)	267, 407
Hsp92II	CATG	3 cut(s)	143, 285, 548
HspAI	GCGC	1 cut(s)	630
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	60, 92, 387, 421, 583
LpnPI	CCDG	6 cut(s)	103, 137, 276, 285, 384, 513
Lsp1109I	GCAGC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	111, 411
MaeII	ACGT	2 cut(s)	267, 407
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	5 cut(s)	62, 94, 389, 423, 585
MboI	GATC	5 cut(s)	60, 92, 387, 421, 583
MboII	GAAGA	2 cut(s)	93, 392
MfeI	CAATTG	1 cut(s)	599
MluCI	AATT	6 cut(s)	16, 220, 441, 485, 599, 692
MlyI	GAGTC	3 cut(s)	169, 296, 724
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	5 cut(s)	38, 503, 537, 636, 763
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	2 cut(s)	124, 755
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	513
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	5 cut(s)	60, 92, 387, 421, 583
NlaIII	CATG	3 cut(s)	143, 285, 548
NspI	RCATGY	2 cut(s)	285, 548
PaeI	GCATGC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	2 cut(s)	47, 56
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	77, 685
PleI	GAGTC	3 cut(s)	168, 295, 723
PpsI	GAGTC	3 cut(s)	168, 295, 723
PspPI	GGNCC	1 cut(s)	56
RsaI	GTAC	4 cut(s)	23, 233, 526, 641
RsaNI	GTAC	4 cut(s)	22, 232, 525, 640
SaqAI	TTAA	5 cut(s)	38, 503, 537, 636, 763
SatI	GCNGC	2 cut(s)	76, 684
Sau3AI	GATC	5 cut(s)	60, 92, 387, 421, 583
Sau96I	GGNCC	1 cut(s)	56
ScaI	AGTACT	2 cut(s)	233, 641
SchI	GAGTC	3 cut(s)	169, 296, 724
ScrFI	CCNGG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	434, 536
SmoI	CTYRAG	2 cut(s)	434, 536
SphI	GCATGC	1 cut(s)	548
Sse9I	AATT	6 cut(s)	16, 220, 441, 485, 599, 692
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	2 cut(s)	111, 411
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	99, 524
TaiI	ACGT	2 cut(s)	270, 410
TaqI	TCGA	1 cut(s)	561
TasI	AATT	6 cut(s)	16, 220, 441, 485, 599, 692
TatI	WGTACW	3 cut(s)	21, 231, 639
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	5 cut(s)	38, 503, 537, 636, 763
Tru9I	TTAA	5 cut(s)	38, 503, 537, 636, 763
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	683
TspDTI	ATGAA	1 cut(s)	483
TspRI	CASTG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	3 cut(s)	16, 220, 485
XceI	RCATGY	2 cut(s)	285, 548
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	2 cut(s)	111, 411
ZrmI	AGTACT	2 cut(s)	233, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.