Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003938

Physical Location & Seq

Genomic Coordinates Forward (+)

24604134 .. 24606034

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGATGATACTGATATCAGAAACAGCGTGGATGATGTTGAAATGAATGAGTCTGATAATGAAAGTGTTGGCCAAGAAAGTCGTATTGGTGGAAGTTCTTATATGCCAACTTTTCAATACTCTCAGCAGAAAATGAGGCAAGGTTTGGCCAAGTACATTTCTTCAAGTGGGCAAGTTTATTCTTCTGCTCAACATGCTAGATTTGAAAAGTTTATTCAAGAATATGTTCAGTCTGAGTATTCTAGTCTTTGCCTGCACACTATCAAAAGTGATTCTCTGAACTACTTCAATGATATGAAAAGAGCACTGGGTCTAAATTTCTTAGTTAAAGACATTTCCGAATACTTGAGCATGCCATTGTTGAATATGGATACAGAAGCTATCAAAGCTAGGTTACATGACCTCTACAAAGGTTATGAATCCAAATTTGCAGAAAAAGAAAGTGCTGATCGAATCCCAAAACGAAAGAGATTTGATGATGGTGATGAAAGTGCTGTTGAGAAATTTCTAGAATGGAGGAGACAGAAGGATATAAAGACCTATGGACCAACTGAGCTTCATAAATACCTGGGAGTTGACTATACAGCCTATATGACCAATGAAGAGATTGGGAAGATACATGAGACTGAGCTCAGAACTGGACCAATGATGATATTGTCAGACTACTTTGCAGATTCAGATAGAAGCATTGATAAGCATCAGCCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT

Protein Analysis

237

Amino Acids

27.41

Weight (kDa)

5.16

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003938)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15281 FvH4_6g23002
prunus_persica	Prupe.7G011700_v2.0.a1 Prupe.8G060700_v2.0.a1
pyrus_communis	pycom11g23400 pycom11g23410
rosa_chinensis	RchiOBHm_Chr3g0493121 RchiOBHm_Chr4g0416701 RchiOBHm_Chr5g0030191 RchiOBHm_Chr5g0030261 RchiOBHm_Chr5g0030451 RchiOBHm_Chr5g0030531
rosa_laevigata	RLG00000004075 RLG00000009332 RLG00000033223
rosa_roxburghii	Rroxscaffold_1G00012180 Rroxscaffold_3G00221970 Rroxscaffold_5G00352040 Rroxscaffold_5G00352700 Rroxscaffold_5G00366920 Rroxscaffold_6G00401320 Rroxscaffold_7G00214040
rosa_rugosa	Rorug05G0118200 Rorug05G0244100 Rorug05G0431600
rosa_samantha	Rh2AG303900 Rh5BG493400 Rh5CG358400 Rh5CG517400 Rh5DG213900 Rh6BG199100 Rh7DG307600
rosa_wichuraiana	Rw5G019230 Rw6G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	70, 147
AcsI	RAATTY	3 cut(s)	316, 425, 503
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	7 cut(s)	41, 116, 165, 206, 218, 289, 364
AjnI	CCWGG	1 cut(s)	567
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	4 cut(s)	380, 389, 556, 631
AluI	AGCT	4 cut(s)	380, 389, 556, 631
Alw21I	GWGCWC	2 cut(s)	307, 633
Alw26I	GTCTC	2 cut(s)	514, 617
AoxI	GGCC	2 cut(s)	70, 147
ApoI	RAATTY	3 cut(s)	316, 425, 503
Asp700I	GAANNNNTTC	2 cut(s)	225, 284
AspS9I	GGNCC	2 cut(s)	545, 641
AsuHPI	GGTGA	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	545, 641
BalI	TGGCCA	2 cut(s)	72, 149
BanII	GRGCYC	1 cut(s)	633
Bbv12I	GWGCWC	2 cut(s)	307, 633
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	569
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	514, 617
BfaI	CTAG	4 cut(s)	198, 243, 390, 509
BfuI	GTATCC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	2 cut(s)	545, 641
BmgT120I	GGNCC	2 cut(s)	545, 641
BmrFI	CCNGG	1 cut(s)	569
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	706
BmuI	ACTGGG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	312, 643
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	2 cut(s)	10, 37
BseJI	GATNNNNATC	1 cut(s)	696
BseMII	CTCAG	5 cut(s)	137, 225, 543, 618, 646
BseNI	ACTGG	2 cut(s)	312, 643
BseRI	GAGGAG	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	72, 149
BsiHKAI	GWGCWC	2 cut(s)	307, 633
BsmAI	GTCTC	2 cut(s)	514, 617
BsnI	GGCC	2 cut(s)	72, 149
Bsp1286I	GDGCHC	2 cut(s)	307, 633
Bsp143I	GATC	1 cut(s)	448
BspANI	GGCC	2 cut(s)	72, 149
BspCNI	CTCAG	5 cut(s)	136, 226, 544, 619, 645
BsrI	ACTGG	2 cut(s)	312, 643
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	569
Bst6I	CTCTTC	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	254, 353
BstDEI	CTNAG	6 cut(s)	123, 234, 322, 552, 627, 632
BstF5I	GGATG	2 cut(s)	10, 37
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	2 cut(s)	514, 617
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 386
BstNI	CCWGG	1 cut(s)	569
BstNSI	RCATGY	2 cut(s)	197, 355
BstSCI	CCNGG	1 cut(s)	567
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	72, 149
BtsCI	GGATG	2 cut(s)	10, 37
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	254, 353
Cfr13I	GGNCC	2 cut(s)	545, 641
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	4 cut(s)	194, 352, 398, 620
CviJI	RGCY	8 cut(s)	72, 149, 380, 389, 556, 587, 631, 703
CviKI_1	RGCY	8 cut(s)	72, 149, 380, 389, 556, 587, 631, 703
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	6 cut(s)	123, 234, 322, 552, 627, 632
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
EaeI	YGGCCR	2 cut(s)	70, 147
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Ecl136II	GAGCTC	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	633
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	545, 641
Eco53kI	GAGCTC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	567
EcoRV	GATATC	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	633
FaeI	CATG	4 cut(s)	197, 355, 401, 623
FatI	CATG	4 cut(s)	193, 351, 397, 619
FokI	GGATG	2 cut(s)	17, 44
FriOI	GRGCYC	1 cut(s)	633
FspBI	CTAG	4 cut(s)	198, 243, 390, 509
HaeIII	GGCC	2 cut(s)	72, 149
Hin1II	CATG	4 cut(s)	197, 355, 401, 623
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	5 cut(s)	50, 272, 419, 453, 674
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	8 cut(s)	20, 55, 235, 279, 340, 635, 661, 679
Hpy188III	TCNNGA	2 cut(s)	218, 509
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	1 cut(s)	520
HpyCH4V	TGCA	3 cut(s)	256, 431, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 386
HpyF3I	CTNAG	6 cut(s)	123, 234, 322, 552, 627, 632
Hsp92II	CATG	4 cut(s)	197, 355, 401, 623
Kzo9I	GATC	1 cut(s)	448
LpnPI	CCDG	5 cut(s)	266, 293, 554, 581, 624
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	4 cut(s)	198, 243, 390, 509
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	4 cut(s)	153, 174, 614, 625
MhlI	GDGCHC	2 cut(s)	307, 633
MlsI	TGGCCA	2 cut(s)	72, 149
MluCI	AATT	4 cut(s)	316, 425, 503, 705
MluNI	TGGCCA	2 cut(s)	72, 149
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	129, 413, 510
Mox20I	TGGCCA	2 cut(s)	72, 149
MroXI	GAANNNNTTC	2 cut(s)	225, 284
MscI	TGGCCA	2 cut(s)	72, 149
MseI	TTAA	1 cut(s)	327
Msp20I	TGGCCA	2 cut(s)	72, 149
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	2 cut(s)	194, 386
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	197, 355, 401, 623
NspI	RCATGY	2 cut(s)	197, 355
PaeI	GCATGC	1 cut(s)	355
PdmI	GAANNNNTTC	2 cut(s)	225, 284
PfeI	GAWTC	4 cut(s)	272, 419, 453, 674
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspPI	GGNCC	2 cut(s)	545, 641
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	2 cut(s)	545, 641
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	2 cut(s)	307, 633
SfaNI	GCATC	1 cut(s)	706
SinI	GGWCC	2 cut(s)	545, 641
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	4 cut(s)	316, 425, 503, 705
SspMI	CTAG	4 cut(s)	198, 243, 390, 509
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	567
TaqI	TCGA	1 cut(s)	451
TasI	AATT	4 cut(s)	316, 425, 503, 705
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	4 cut(s)	272, 419, 453, 674
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	7 cut(s)	59, 75, 311, 432, 501, 548, 615
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	2 cut(s)	545, 641
XapI	RAATTY	3 cut(s)	316, 425, 503
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	2 cut(s)	197, 355
XmnI	GAANNNNTTC	2 cut(s)	225, 284
XspI	CTAG	4 cut(s)	198, 243, 390, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.