pycom11g23410

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003938
Physical Location & Seq
Reverse (-)
26405285 .. 26405725
441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g23410.1

Sequence Viewer

Length: 441 bp
ATGTTACAATCATGTGTGAATTGCAATGCTGCAATCACCGATTATTATACCGGTAAGCATGATGCTGATCTTTTATGCAAAGCGGATTGGGAGCTTAGTTTTGTTGTGTTCATGGAGTTTTTGAGTGTTTTTTATGAAGTTGCAATCTCATTGGGTTCAAAGGTTTATTCTCCCAGTTCTTGTATGGCACTCTATCATTTGTTAGGCATTAGCTTTACATTTTCCGAACACAAATCTCATTCGGGGTTCAAAGCGATTTATGACATTATGGAATCGAAATTCAGAAGCTATTACGAGTTCATGTTGCCTAGTTTCTGTTTAGCTAAAGCAAGAGTCCCCACGATGAAACTATGCGGCGTAGAGCACATGGTGAATGACATTTCCGAATATTTAAGCGCGCCATTGAAATTCAATGAAAAAGCACTAGACACTGTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT

Protein Analysis

147

Amino Acids

16.54

Weight (kDa)

5.67

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 398
AciI CCGC 2 cut(s) 83, 354
AcsI RAATTY 2 cut(s) 278, 407
AdeI CACNNNGTG 1 cut(s) 370
AgeI ACCGGT 1 cut(s) 50
AgsI TTSAA 4 cut(s) 159, 250, 406, 412
AluBI AGCT 4 cut(s) 94, 213, 288, 323
AluI AGCT 4 cut(s) 94, 213, 288, 323
Alw21I GWGCWC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 2 cut(s) 278, 407
AsiGI ACCGGT 1 cut(s) 50
AspLEI GCGC 2 cut(s) 398, 400
AsuHPI GGTGA 2 cut(s) 28, 382
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 16
BfaI CTAG 2 cut(s) 309, 425
BisI GCNGC 2 cut(s) 30, 355
BlsI GCNGC 2 cut(s) 31, 356
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 66
BseJI GATNNNNATC 1 cut(s) 66
BseMI GCAATG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 174
BsePI GCGCGC 1 cut(s) 396
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 398
BshTI ACCGGT 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 2 cut(s) 83, 354
BspFNI CGCG 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 174
BssAI RCCGGY 1 cut(s) 50
BssHII GCGCGC 1 cut(s) 396
BssMI GATC 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 398
BstHHI GCGC 2 cut(s) 398, 400
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 398
CfoI GCGC 2 cut(s) 398, 400
Cfr10I RCCGGY 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 50
CviAII CATG 5 cut(s) 12, 59, 112, 301, 367
CviJI RGCY 4 cut(s) 94, 213, 288, 323
CviKI_1 RGCY 4 cut(s) 94, 213, 288, 323
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
DraIII CACNNNGTG 1 cut(s) 370
FaeI CATG 5 cut(s) 15, 62, 115, 304, 370
FaqI GGGAC 1 cut(s) 320
FatI CATG 5 cut(s) 11, 58, 111, 300, 366
Fnu4HI GCNGC 2 cut(s) 30, 355
Fsp4HI GCNGC 2 cut(s) 30, 355
FspBI CTAG 2 cut(s) 309, 425
GlaI GCGC 2 cut(s) 397, 399
GluI GCNGC 2 cut(s) 30, 355
HapII CCGG 1 cut(s) 51
HhaI GCGC 2 cut(s) 398, 400
Hin1II CATG 5 cut(s) 15, 62, 115, 304, 370
Hin6I GCGC 2 cut(s) 396, 398
HinP1I GCGC 2 cut(s) 396, 398
HinfI GANTC 2 cut(s) 272, 333
HpaII CCGG 1 cut(s) 51
HphI GGTGA 2 cut(s) 28, 382
Hpy188I TCNGA 3 cut(s) 226, 284, 385
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4V TGCA 5 cut(s) 24, 32, 78, 143, 437
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 5 cut(s) 15, 62, 115, 304, 370
HspAI GCGC 2 cut(s) 396, 398
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 2 cut(s) 64, 187
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 309, 425
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 3 cut(s) 19, 278, 407
MlyI GAGTC 1 cut(s) 342
MseI TTAA 1 cut(s) 392
MspI CCGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 398
NdeII GATC 1 cut(s) 67
NlaIII CATG 5 cut(s) 15, 62, 115, 304, 370
PauI GCGCGC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 272
PinAI ACCGGT 1 cut(s) 50
PkrI GCNGC 2 cut(s) 31, 356
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PteI GCGCGC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 2 cut(s) 30, 355
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 342
SduI GDGCHC 1 cut(s) 366
SetI ASST 5 cut(s) 96, 165, 215, 290, 325
SfaNI GCATC 1 cut(s) 52
Sse9I AATT 3 cut(s) 19, 278, 407
SsiI CCGC 2 cut(s) 83, 354
SspI AATATT 1 cut(s) 389
SspMI CTAG 2 cut(s) 309, 425
TaaI ACNGT 1 cut(s) 433
TaqI TCGA 1 cut(s) 275
TasI AATT 3 cut(s) 19, 278, 407
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TscAI CASTG 1 cut(s) 436
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 5 cut(s) 100, 150, 289, 359, 429
TspRI CASTG 1 cut(s) 436
XapI RAATTY 2 cut(s) 278, 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 2 cut(s) 309, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.