Rh1BG115600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011620
Physical Location & Seq
Forward (+)
19751822 .. 19756159
4338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG115600.1

Sequence Viewer

Length: 1629 bp
ATGTCAGATCATTGGAGGGAATTTAGAGTTCGTGGAGAGCTCCAATATCATGATGTGTATGTCATTTTGGAGATACACCATGGTGGTCAGTTTGTCGAAGTTGGTGGTGGAAGGTTTGAATACAATGGAGGTGAAGTTCATTGGGTGGAAATGATTGATCCAGAAAAATTTTCTTGGACAGATTTGAATACTTTTGCTTGGAGATTAGGTTATAGAAAGCCTCCTGTTCATTATTGGTTCAAGTATCATGCAAAACCAATATACTTGCCTATTAGAATTGACAAGGAAGCTGTGGGTATGCTCTCAGATTTACCTAAAGCTAGGAAGGTTGAAGTATATTATGTTGGAGGAGGTGATAGAGATGTGGAAGTTTGTGAGAAGGAGGATCAGATTAAAGATTTTTCAGAGGTGGTTCCACATTTAAAGTTTATGCCTGAGATTATTATGGTACCACTTAAATCTGCTAATGTGGGGAATGATAAGGGGAAGTGGAAAGAGTTGGATATTGAAAACAGTGAGGATGAAGAAGTCTTTGAGCATGATGATGATGACGAAACAGCGAAAGAAGAGGTCGATGACAAGTTCTTTGACAGTGATTATGAATTAAACCCCGAGGATGATGGTGAATCATATGGTGTCGAAGCAGATGATGTTGAGTTCAATGCAAATGTCGATGATATAAATGAGATTGAGGAATGGACTGATATGGGATTTACTGGTGAGATATCAGACAATAGTGAAGACAGTGCTGAGTTGGTAAGTGCAAATGAGGAATCTGAAGATGAAGTTAATGATGGTTCAGTCTCAAGTAAAAGGAAAAAGATCAAAGGGAAACATTGGGTTCCTGAAAGAGATATGAAAAACCCCCACTTTGAATTGGGTCAACATTTTGATAATAGATTTCAATTTAAGGAGGCAGTAAGGCATTATGCAGTACTTAACCAGGCAAATCTGCACTTTCAGAAAAACAACAAGACACAGGTCATTGCGGTGTGTGGAAAGAAGCAGAAGGGAAAGAGGAGTGAGAGGAAATGCTCGTTTTGGCTACTTGCTAGTGCTATTAGTGATAACTCACCTGTTTTTGTAGTGAAGACATGTGACTTGAGACACAACAATTGCGCTCGTGTGGCTAGGGTGAACATGTGCACCACAACATTTCTTGCGGGGTCATATCAGAAGAGGTGGAAGGCAGACCCTAACATGTCTAGAAAGAACTTTCAAGATACTGTTCAGGACGATTTGAAGCAGAATATATCAGTGAAACAAAAGGAGACAAATGCAGAGCGAGAAAGTGTAAGTGTAAATGTGAGCACTCAAGGAAATAACACTGTCAATGTGAGAGTCCAAAATCAAGGCAATAATGAAGTAAGTATTAATGTCAAATCCAAACAAGTTGCTGCTGCAAAGAAACAGGTTAGGAGAAACATAAGTAAGGTTGGTGAAGCATCTAGATCAAAAACAATATCTTCCCAAAGTGCAGCTTCAAACTCTATGCATACATCATCTCAACCATCAATTCCCACAACAATTTTCCAGCTTAACGACTCATCCTCAAGTCAGCCTATTGGTTCATCTAGGAAGAGCAAAGTGTCATATGTTAAAGATGGGACTACTGAAGGGAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

542

Amino Acids

61.78

Weight (kDa)

5.47

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 21 - 114 2.1e-14 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 448
AciI CCGC 2 cut(s) 989, 1163
AclWI GGATC 2 cut(s) 152, 393
AcsI RAATTY 2 cut(s) 20, 167
AcuI CTGAAG 1 cut(s) 798
AfaI GTAC 2 cut(s) 450, 936
AflIII ACRYGT 3 cut(s) 1094, 1140, 1200
AjnI CCWGG 1 cut(s) 942
AleI CACNNNNGTG 1 cut(s) 81
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 5 cut(s) 40, 290, 320, 1481, 1537
AluI AGCT 5 cut(s) 40, 290, 320, 1481, 1537
Alw21I GWGCWC 3 cut(s) 42, 1148, 1313
Alw26I GTCTC 3 cut(s) 808, 1099, 1265
Alw44I GTGCAC 1 cut(s) 1144
AlwI GGATC 2 cut(s) 152, 393
Ama87I CYCGRG 1 cut(s) 611
ApaLI GTGCAC 1 cut(s) 1144
ApeKI GCWGC 3 cut(s) 1397, 1400, 1478
ApoI RAATTY 2 cut(s) 20, 167
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AseI ATTAAT 1 cut(s) 1374
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 1 cut(s) 1121
AsuHPI GGTGA 7 cut(s) 143, 365, 635, 731, 1065, 1147, 1451
AvaI CYCGRG 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 1148
BanI GGYRCC 1 cut(s) 448
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 1122
BbsI GAAGAC 2 cut(s) 747, 1097
Bbv12I GWGCWC 3 cut(s) 42, 1148, 1313
BbvI GCAGC 3 cut(s) 1384, 1387, 1490
BccI CCATC 4 cut(s) 614, 788, 1519, 1598
BciT130I CCWGG 1 cut(s) 944
BcoDI GTCTC 3 cut(s) 808, 1099, 1265
BfaI CTAG 6 cut(s) 321, 1053, 1131, 1206, 1449, 1575
BisI GCNGC 3 cut(s) 1398, 1401, 1479
BlsI GCNGC 3 cut(s) 1399, 1402, 1480
BmcAI AGTACT 1 cut(s) 936
Bme1390I CCNGG 1 cut(s) 944
BmeT110I CYCGRG 1 cut(s) 611
BmiI GGNNCC 3 cut(s) 414, 450, 843
BmrFI CCNGG 1 cut(s) 944
BmsI GCATC 1 cut(s) 1454
BoxI GACNNNNGTC 1 cut(s) 980
BpiI GAAGAC 2 cut(s) 747, 1097
BpuEI CTTGAG 4 cut(s) 790, 1123, 1299, 1537
BsaJI CCNNGG 2 cut(s) 79, 612
BsaXI ACNNNNNCTCC 4 cut(s) 120, 150, 193, 223
Bse1I ACTGG 1 cut(s) 721
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 1 cut(s) 944
BseDI CCNNGG 2 cut(s) 79, 612
BseGI GGATG 3 cut(s) 526, 622, 1547
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 3 cut(s) 318, 426, 741
BseNI ACTGG 1 cut(s) 721
BseRI GAGGAG 2 cut(s) 363, 1033
BseSI GKGCMC 1 cut(s) 1148
BseXI GCAGC 3 cut(s) 1384, 1387, 1490
BsgI GTGCAG 2 cut(s) 938, 1497
BshNI GGYRCC 1 cut(s) 448
BsiHKAI GWGCWC 3 cut(s) 42, 1148, 1313
BsiHKCI CYCGRG 1 cut(s) 611
BslFI GGGAC 1 cut(s) 1621
BsmAI GTCTC 3 cut(s) 808, 1099, 1265
BsmFI GGGAC 1 cut(s) 1621
BsoBI CYCGRG 1 cut(s) 611
Bsp1286I GDGCHC 3 cut(s) 42, 1148, 1313
Bsp143I GATC 5 cut(s) 7, 157, 385, 822, 1451
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 2 cut(s) 989, 1163
BspCNI CTCAG 3 cut(s) 317, 427, 742
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 3 cut(s) 414, 450, 843
BspPI GGATC 2 cut(s) 152, 393
BspQI GCTCTTC 1 cut(s) 1574
BspT107I GGYRCC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 984
BsrI ACTGG 1 cut(s) 721
BssECI CCNNGG 2 cut(s) 79, 612
BssMI GATC 5 cut(s) 7, 157, 385, 822, 1451
BssSI CACGAG 1 cut(s) 1122
BssT1I CCWWGG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 1122
Bst2UI CCWGG 1 cut(s) 944
Bst4CI ACNGT 5 cut(s) 515, 593, 746, 1228, 1330
Bst6I CTCTTC 3 cut(s) 561, 1172, 1574
BstDEI CTNAG 3 cut(s) 304, 435, 750
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 3 cut(s) 526, 622, 1547
BstHHI GCGC 1 cut(s) 1121
BstKTI GATC 5 cut(s) 10, 160, 388, 825, 1454
BstMAI GTCTC 3 cut(s) 808, 1099, 1265
BstMBI GATC 5 cut(s) 7, 157, 385, 822, 1451
BstMWI GCNNNNNNNGC 1 cut(s) 1127
BstNI CCWGG 1 cut(s) 944
BstNSI RCATGY 3 cut(s) 1098, 1144, 1204
BstPAI GACNNNNGTC 1 cut(s) 980
BstSCI CCNGG 1 cut(s) 942
BstSLI GKGCMC 1 cut(s) 1148
BstV1I GCAGC 3 cut(s) 1384, 1387, 1490
BstV2I GAAGAC 2 cut(s) 747, 1097
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 3 cut(s) 526, 622, 1547
BtsIMutI CAGTG 5 cut(s) 520, 598, 751, 1263, 1326
CciI TCATGA 1 cut(s) 49
CfoI GCGC 1 cut(s) 1121
Csp6I GTAC 2 cut(s) 449, 935
CviAII CATG 7 cut(s) 50, 80, 248, 539, 1095, 1141, 1201
CviJI RGCY 9 cut(s) 40, 220, 290, 320, 1045, 1130, 1481, 1537, 1561
CviKI_1 RGCY 9 cut(s) 40, 220, 290, 320, 1045, 1130, 1481, 1537, 1561
CviQI GTAC 2 cut(s) 449, 935
DdeI CTNAG 3 cut(s) 304, 435, 750
DpnI GATC 5 cut(s) 9, 159, 387, 824, 1453
DpnII GATC 5 cut(s) 7, 157, 385, 822, 1451
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 3 cut(s) 561, 1172, 1574
EarI CTCTTC 3 cut(s) 561, 1172, 1574
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 726
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 942
EcoRV GATATC 1 cut(s) 726
EcoT14I CCWWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 1497
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 7 cut(s) 53, 83, 251, 542, 1098, 1144, 1204
FalI AAGNNNNNCTT 2 cut(s) 1465, 1497
FaqI GGGAC 1 cut(s) 1621
FatI CATG 7 cut(s) 49, 79, 247, 538, 1094, 1140, 1200
FauI CCCGC 1 cut(s) 1156
FauNDI CATATG 2 cut(s) 631, 1594
Fnu4HI GCNGC 3 cut(s) 1398, 1401, 1479
FokI GGATG 3 cut(s) 533, 629, 1534
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 3 cut(s) 1398, 1401, 1479
FspBI CTAG 6 cut(s) 321, 1053, 1131, 1206, 1449, 1575
GlaI GCGC 1 cut(s) 1120
GluI GCNGC 3 cut(s) 1398, 1401, 1479
HhaI GCGC 1 cut(s) 1121
Hin1II CATG 7 cut(s) 53, 83, 251, 542, 1098, 1144, 1204
Hin6I GCGC 1 cut(s) 1119
HinP1I GCGC 1 cut(s) 1119
HincII GTYRAC 1 cut(s) 884
HindII GTYRAC 1 cut(s) 884
HinfI GANTC 4 cut(s) 626, 773, 1341, 1544
HphI GGTGA 7 cut(s) 143, 365, 635, 731, 1065, 1147, 1451
Hpy166II GTNNAC 3 cut(s) 884, 1138, 1146
Hpy188I TCNGA 8 cut(s) 7, 307, 390, 406, 730, 778, 963, 1176
Hpy188III TCNNGA 7 cut(s) 50, 161, 845, 1206, 1220, 1232, 1449
Hpy8I GTNNAC 3 cut(s) 884, 1138, 1146
HpyAV CCTTC 6 cut(s) 105, 319, 373, 1003, 1180, 1610
HpyCH4III ACNGT 5 cut(s) 515, 593, 746, 1228, 1330
HpyF10VI GCNNNNNNNGC 1 cut(s) 1127
HpyF3I CTNAG 3 cut(s) 304, 435, 750
Hsp92II CATG 7 cut(s) 53, 83, 251, 542, 1098, 1144, 1204
HspAI GCGC 1 cut(s) 1119
KpnI GGTACC 1 cut(s) 452
Kzo9I GATC 5 cut(s) 7, 157, 385, 822, 1451
LguI GCTCTTC 1 cut(s) 1574
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 3 cut(s) 1384, 1387, 1490
LweI GCATC 1 cut(s) 1454
MaeI CTAG 6 cut(s) 321, 1053, 1131, 1206, 1449, 1575
MaeIII GTNAC 1 cut(s) 1097
MalI GATC 5 cut(s) 9, 159, 387, 824, 1453
MboI GATC 5 cut(s) 7, 157, 385, 822, 1451
MboII GAAGA 8 cut(s) 536, 578, 752, 791, 1102, 1189, 1458, 1591
MfeI CAATTG 1 cut(s) 1114
MhlI GDGCHC 3 cut(s) 42, 1148, 1313
MluCI AATT 9 cut(s) 20, 167, 276, 602, 875, 905, 1114, 1515, 1527
MlyI GAGTC 2 cut(s) 1350, 1538
MmeI TCCRAC 2 cut(s) 325, 480
Mph1103I ATGCAT 1 cut(s) 1497
MslI CAYNNNNRTG 3 cut(s) 81, 543, 989
MspR9I CCNGG 1 cut(s) 944
MunI CAATTG 1 cut(s) 1114
MvaI CCWGG 1 cut(s) 944
MwoI GCNNNNNNNGC 1 cut(s) 1127
NcoI CCATGG 1 cut(s) 79
NdeI CATATG 2 cut(s) 631, 1594
NdeII GATC 5 cut(s) 7, 157, 385, 822, 1451
NlaIII CATG 7 cut(s) 53, 83, 251, 542, 1098, 1144, 1204
NlaIV GGNNCC 3 cut(s) 414, 450, 843
NmuCI GTSAC 1 cut(s) 1097
NsiI ATGCAT 1 cut(s) 1497
NspI RCATGY 3 cut(s) 1098, 1144, 1204
OliI CACNNNNGTG 1 cut(s) 81
PagI TCATGA 1 cut(s) 49
PciI ACATGT 3 cut(s) 1094, 1140, 1200
PciSI GCTCTTC 1 cut(s) 1574
PfeI GAWTC 2 cut(s) 626, 773
PkrI GCNGC 3 cut(s) 1399, 1402, 1480
PleI GAGTC 2 cut(s) 1349, 1538
PpsI GAGTC 2 cut(s) 1349, 1538
PscI ACATGT 3 cut(s) 1094, 1140, 1200
PshAI GACNNNNGTC 1 cut(s) 980
PshBI ATTAAT 1 cut(s) 1374
Psp124BI GAGCTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 942
PspGI CCWGG 1 cut(s) 942
PspN4I GGNNCC 3 cut(s) 414, 450, 843
RsaI GTAC 2 cut(s) 450, 936
RsaNI GTAC 2 cut(s) 449, 935
RseI CAYNNNNRTG 3 cut(s) 81, 543, 989
SacI GAGCTC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 1574
SatI GCNGC 3 cut(s) 1398, 1401, 1479
Sau3AI GATC 5 cut(s) 7, 157, 385, 822, 1451
ScaI AGTACT 1 cut(s) 936
SchI GAGTC 2 cut(s) 1350, 1538
ScrFI CCNGG 1 cut(s) 944
SduI GDGCHC 3 cut(s) 42, 1148, 1313
SfaNI GCATC 1 cut(s) 1454
SmiMI CAYNNNNRTG 3 cut(s) 81, 543, 989
SmlI CTYRAG 4 cut(s) 805, 1102, 1314, 1552
SmoI CTYRAG 4 cut(s) 805, 1102, 1314, 1552
Sse9I AATT 9 cut(s) 20, 167, 276, 602, 875, 905, 1114, 1515, 1527
SsiI CCGC 2 cut(s) 989, 1163
SspMI CTAG 6 cut(s) 321, 1053, 1131, 1206, 1449, 1575
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 942
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 5 cut(s) 515, 593, 746, 1228, 1330
TaqI TCGA 4 cut(s) 96, 573, 639, 672
TasI AATT 9 cut(s) 20, 167, 276, 602, 875, 905, 1114, 1515, 1527
TatI WGTACW 1 cut(s) 934
TfiI GAWTC 2 cut(s) 626, 773
TscAI CASTG 5 cut(s) 520, 598, 751, 1263, 1333
TseFI GTSAC 1 cut(s) 1097
TseI GCWGC 3 cut(s) 1397, 1400, 1478
Tsp45I GTSAC 1 cut(s) 1097
TspDTI ATGAA 8 cut(s) 128, 218, 537, 615, 798, 872, 1377, 1560
TspRI CASTG 5 cut(s) 520, 598, 751, 1263, 1333
VneI GTGCAC 1 cut(s) 1144
VspI ATTAAT 1 cut(s) 1374
XapI RAATTY 2 cut(s) 20, 167
XbaI TCTAGA 2 cut(s) 1205, 1448
XceI RCATGY 3 cut(s) 1098, 1144, 1204
XspI CTAG 6 cut(s) 321, 1053, 1131, 1206, 1449, 1575
ZrmI AGTACT 1 cut(s) 936
Zsp2I ATGCAT 1 cut(s) 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.