No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0262731 |
| rosa_laevigata | RLG00000007845 RLG00000008818 RLG00000010262 RLG00000022072 |
| rosa_roxburghii | Rroxscaffold_4G00323680 Rroxscaffold_5G00332940 |
| rosa_rugosa | Rorug05G0244100 Rorug05G0381700 Rorug07G0212500 |
| rosa_samantha | Rh1BG115600 Rh2AG636500 Rh2BG649900 Rh2CG616600 Rh2DG664100 Rh3AG276800 Rh3BG311600 Rh4DG234900 Rh7AG067400 Rh7BG345900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 223 |
| AgsI | TTSAA | 3 cut(s) | 110, 249, 323 |
| AluBI | AGCT | 1 cut(s) | 245 |
| AluI | AGCT | 1 cut(s) | 245 |
| Alw21I | GWGCWC | 1 cut(s) | 77 |
| Alw26I | GTCTC | 1 cut(s) | 29 |
| AlwI | GGATC | 1 cut(s) | 223 |
| ApeKI | GCWGC | 3 cut(s) | 161, 164, 242 |
| AseI | ATTAAT | 1 cut(s) | 138 |
| AsuHPI | GGTGA | 1 cut(s) | 215 |
| Bbv12I | GWGCWC | 1 cut(s) | 77 |
| BbvI | GCAGC | 3 cut(s) | 148, 151, 254 |
| BccI | CCATC | 2 cut(s) | 283, 362 |
| BcoDI | GTCTC | 1 cut(s) | 29 |
| BfaI | CTAG | 1 cut(s) | 339 |
| BisI | GCNGC | 3 cut(s) | 162, 165, 243 |
| BlsI | GCNGC | 3 cut(s) | 163, 166, 244 |
| BpuEI | CTTGAG | 1 cut(s) | 63 |
| BseGI | GGATG | 1 cut(s) | 311 |
| BseMII | CTCAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 3 cut(s) | 148, 151, 254 |
| BsgI | GTGCAG | 1 cut(s) | 261 |
| BsiHKAI | GWGCWC | 1 cut(s) | 77 |
| BsmAI | GTCTC | 1 cut(s) | 29 |
| Bsp1286I | GDGCHC | 1 cut(s) | 77 |
| Bsp143I | GATC | 1 cut(s) | 215 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 1 cut(s) | 223 |
| BspQI | GCTCTTC | 1 cut(s) | 39 |
| BssMI | GATC | 1 cut(s) | 215 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| Bst6I | CTCTTC | 1 cut(s) | 39 |
| BstDEI | CTNAG | 2 cut(s) | 270, 378 |
| BstF5I | GGATG | 1 cut(s) | 311 |
| BstKTI | GATC | 1 cut(s) | 218 |
| BstMAI | GTCTC | 1 cut(s) | 29 |
| BstMBI | GATC | 1 cut(s) | 215 |
| BstV1I | GCAGC | 3 cut(s) | 148, 151, 254 |
| BtsCI | GGATG | 1 cut(s) | 311 |
| BtsIMutI | CAGTG | 1 cut(s) | 90 |
| CviJI | RGCY | 2 cut(s) | 245, 274 |
| CviKI_1 | RGCY | 2 cut(s) | 245, 274 |
| DdeI | CTNAG | 2 cut(s) | 270, 378 |
| DpnI | GATC | 1 cut(s) | 217 |
| DpnII | GATC | 1 cut(s) | 215 |
| Eam1104I | CTCTTC | 1 cut(s) | 39 |
| EarI | CTCTTC | 1 cut(s) | 39 |
| EcoT22I | ATGCAT | 1 cut(s) | 261 |
| FaiI | YATR | 5 cut(s) | 191, 257, 261, 358, 360 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 229, 261 |
| FauNDI | CATATG | 1 cut(s) | 358 |
| Fnu4HI | GCNGC | 3 cut(s) | 162, 165, 243 |
| FokI | GGATG | 1 cut(s) | 298 |
| Fsp4HI | GCNGC | 3 cut(s) | 162, 165, 243 |
| FspBI | CTAG | 1 cut(s) | 339 |
| GluI | GCNGC | 3 cut(s) | 162, 165, 243 |
| HphI | GGTGA | 1 cut(s) | 215 |
| Hpy188III | TCNNGA | 1 cut(s) | 10 |
| HpyAV | CCTTC | 1 cut(s) | 110 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4V | TGCA | 3 cut(s) | 167, 242, 259 |
| HpyF3I | CTNAG | 2 cut(s) | 270, 378 |
| Kzo9I | GATC | 1 cut(s) | 215 |
| LguI | GCTCTTC | 1 cut(s) | 39 |
| LpnPI | CCDG | 2 cut(s) | 23, 161 |
| Lsp1109I | GCAGC | 3 cut(s) | 148, 151, 254 |
| MaeI | CTAG | 1 cut(s) | 339 |
| MalI | GATC | 1 cut(s) | 217 |
| MboI | GATC | 1 cut(s) | 215 |
| MboII | GAAGA | 2 cut(s) | 56, 222 |
| MhlI | GDGCHC | 1 cut(s) | 77 |
| MluCI | AATT | 2 cut(s) | 279, 318 |
| MmeI | TCCRAC | 1 cut(s) | 322 |
| MnlI | CCTC | 1 cut(s) | 325 |
| Mph1103I | ATGCAT | 1 cut(s) | 261 |
| MseI | TTAA | 3 cut(s) | 138, 303, 363 |
| NdeI | CATATG | 1 cut(s) | 358 |
| NdeII | GATC | 1 cut(s) | 215 |
| NsiI | ATGCAT | 1 cut(s) | 261 |
| PciSI | GCTCTTC | 1 cut(s) | 39 |
| PkrI | GCNGC | 3 cut(s) | 163, 166, 244 |
| PshBI | ATTAAT | 1 cut(s) | 138 |
| SapI | GCTCTTC | 1 cut(s) | 39 |
| SaqAI | TTAA | 3 cut(s) | 138, 303, 363 |
| SatI | GCNGC | 3 cut(s) | 162, 165, 243 |
| Sau3AI | GATC | 1 cut(s) | 215 |
| SduI | GDGCHC | 1 cut(s) | 77 |
| SetI | ASST | 4 cut(s) | 180, 201, 247, 328 |
| SgeI | CNNG | 7 cut(s) | 22, 62, 92, 163, 167, 188, 351 |
| SmlI | CTYRAG | 1 cut(s) | 78 |
| SmoI | CTYRAG | 1 cut(s) | 78 |
| Sse9I | AATT | 2 cut(s) | 279, 318 |
| SspMI | CTAG | 1 cut(s) | 339 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TasI | AATT | 2 cut(s) | 279, 318 |
| Tru1I | TTAA | 3 cut(s) | 138, 303, 363 |
| Tru9I | TTAA | 3 cut(s) | 138, 303, 363 |
| TscAI | CASTG | 1 cut(s) | 97 |
| TseI | GCWGC | 3 cut(s) | 161, 164, 242 |
| TspDTI | ATGAA | 3 cut(s) | 57, 129, 324 |
| TspRI | CASTG | 1 cut(s) | 97 |
| VspI | ATTAAT | 1 cut(s) | 138 |
| XspI | CTAG | 1 cut(s) | 339 |
| Zsp2I | ATGCAT | 1 cut(s) | 261 |