RLG00000022072

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
80658159 .. 80658780
622 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022072

Sequence Viewer

Length: 348 bp
ATGAGATACTATCTGAGGGGTGGAGTATCATACTCCTTGTACCCATCTAGAATACCAAAACATTATTCACCGTGCATATACACTTTTGGAGATACACCATGGTGGTCAGTTTGTCGAAATTGGTGGTGGAAGGTTAGGAGAAACATAAGTAAGGTTGGTGAAGTATCTAGATCAAAAACAATATCTTCCCAAACCGCAGCTTCAAACTCTATGCATACATCATCTCAACCATCAATTCCCACAATAATTTTCCAGCTTAACCACTCATCCTCAAGTCAGCCTATTGGTTCATCTAGGAAGAGCAAAGTGTCATATGTTAAAGATGGGACTACTGAAGGGAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.08

Weight (kDa)

10.18

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AfaI GTAC 1 cut(s) 41
AgsI TTSAA 1 cut(s) 204
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AleI CACNNNNGTG 1 cut(s) 100
AluBI AGCT 2 cut(s) 200, 256
AluI AGCT 2 cut(s) 200, 256
ApeKI GCWGC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 60, 170
BbvI GCAGC 1 cut(s) 209
BccI CCATC 3 cut(s) 52, 238, 317
BfaI CTAG 3 cut(s) 48, 168, 294
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 5
BseXI GCAGC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 340
Bsp143I GATC 1 cut(s) 170
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 6
BspQI GCTCTTC 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 1 cut(s) 173
BstMBI GATC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 99
CviJI RGCY 3 cut(s) 200, 256, 280
CviKI_1 RGCY 3 cut(s) 200, 256, 280
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 102
FaiI YATR 9 cut(s) 31, 77, 79, 100, 146, 212, 216, 313, 315
FaqI GGGAC 1 cut(s) 340
FatI CATG 1 cut(s) 98
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 48, 168, 294
GluI GCNGC 1 cut(s) 198
Hin1II CATG 1 cut(s) 102
HphI GGTGA 2 cut(s) 60, 170
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 48, 168
HpyAV CCTTC 2 cut(s) 124, 329
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 75, 214
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 1 cut(s) 102
Kzo9I GATC 1 cut(s) 170
LguI GCTCTTC 1 cut(s) 293
LpnPI CCDG 1 cut(s) 266
Lsp1109I GCAGC 1 cut(s) 209
MaeI CTAG 3 cut(s) 48, 168, 294
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 2 cut(s) 177, 310
MluCI AATT 3 cut(s) 118, 234, 246
MnlI CCTC 2 cut(s) 9, 280
Mph1103I ATGCAT 1 cut(s) 216
MseI TTAA 2 cut(s) 258, 318
MslI CAYNNNNRTG 1 cut(s) 100
NcoI CCATGG 1 cut(s) 98
NdeI CATATG 1 cut(s) 313
NdeII GATC 1 cut(s) 170
NlaIII CATG 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 216
OliI CACNNNNGTG 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 199
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 258, 318
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 170
SetI ASST 4 cut(s) 135, 156, 202, 258
SgeI CNNG 8 cut(s) 49, 60, 84, 111, 180, 265, 285, 306
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 3 cut(s) 118, 234, 246
SsiI CCGC 1 cut(s) 195
SspMI CTAG 3 cut(s) 48, 168, 294
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 115
TasI AATT 3 cut(s) 118, 234, 246
Tru1I TTAA 2 cut(s) 258, 318
Tru9I TTAA 2 cut(s) 258, 318
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 279
XbaI TCTAGA 2 cut(s) 47, 167
XspI CTAG 3 cut(s) 48, 168, 294
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.