Rh7AG067400

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011620
Physical Location & Seq
Forward (+)
4677332 .. 4678701
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG067400.1

Sequence Viewer

Length: 600 bp
ATGGTACATCATCCCATTCAACCTCCACCATTTAGAAGACTGCCGGGGAGGCCAAAGAAGGTTAGGAGAAAGGAAGTAGGAGAGGCCATACCAGCTAGTGAAGGGACAACCACTGCAGCAACTACGAACCCAACAATACCAACATCAAATAAACTACCCAAGATTGTATATGTTGGTGGAAAGTGCAGTGTTTGTGGGAATCCAAAGCATAACATGAGAACTTGCCCCACTCGTAAGAAGGAGACAAATGCAGAGCGAGAAAGTGTAAGTGTAAATGTGAGCACTCAAGGAAATAACACTGTCAATGTGAGAGTCCAAAATCAAGGCAATAATGAAGTAAGTATTAATGTCAAATCCAAACAAGTTGCTGCTGCAAAGAAACATGTTAGGAGAAACATAAGTAAGGTTGGTGAAGCATTTAGATCAAAAACAATATCTTCCCAAAGTGCAGCTTCAAACTCTATGCATATATCATCTCAACCATCAATTCCCACAACAATTTTCCAGCTTAACCACTCATCCTCAAGTCAGCCTATTGGTTCATCTAGGAAGAGCAAAGTGTCATATGTTAAACATGGGACTACTGAAGGGAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

199

Amino Acids

21.54

Weight (kDa)

10.82

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 6
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 2 cut(s) 20, 456
AluBI AGCT 3 cut(s) 95, 452, 508
AluI AGCT 3 cut(s) 95, 452, 508
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 236
AoxI GGCC 2 cut(s) 50, 84
ApeKI GCWGC 4 cut(s) 116, 368, 371, 449
AseI ATTAAT 1 cut(s) 345
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 4 cut(s) 128, 355, 358, 461
BccI CCATC 1 cut(s) 490
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 2 cut(s) 96, 546
BfmI CTRYAG 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 4 cut(s) 117, 369, 372, 450
BlsI GCNGC 4 cut(s) 118, 370, 373, 451
Bme1390I CCNGG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 43
BpuEI CTTGAG 2 cut(s) 270, 508
BpuMI CCSGG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 10, 518
BseXI GCAGC 4 cut(s) 128, 355, 358, 461
BsgI GTGCAG 2 cut(s) 205, 468
BshFI GGCC 2 cut(s) 52, 86
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 118, 592
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 2 cut(s) 118, 592
BsnI GGCC 2 cut(s) 52, 86
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 422
BspANI GGCC 2 cut(s) 52, 86
BspMAI CTGCAG 1 cut(s) 118
BspQI GCTCTTC 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 545
BstF5I GGATG 2 cut(s) 10, 518
BstKTI GATC 1 cut(s) 425
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 422
BstMWI GCNNNNNNNGC 2 cut(s) 49, 92
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 4 cut(s) 128, 355, 358, 461
BstV2I GAAGAC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 52, 86
BtsCI GGATG 2 cut(s) 10, 518
BtsI GCAGTG 2 cut(s) 111, 193
BtsIMutI CAGTG 3 cut(s) 111, 193, 297
Csp6I GTAC 1 cut(s) 5
CviAII CATG 3 cut(s) 214, 383, 575
CviJI RGCY 6 cut(s) 52, 86, 95, 452, 508, 532
CviKI_1 RGCY 6 cut(s) 52, 86, 95, 452, 508, 532
CviQI GTAC 1 cut(s) 5
DpnI GATC 1 cut(s) 424
DpnII GATC 1 cut(s) 422
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
EcoT22I ATGCAT 1 cut(s) 468
FaeI CATG 3 cut(s) 217, 386, 578
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 2 cut(s) 118, 592
FatI CATG 3 cut(s) 213, 382, 574
FauNDI CATATG 1 cut(s) 565
Fnu4HI GCNGC 4 cut(s) 117, 369, 372, 450
FokI GGATG 1 cut(s) 505
Fsp4HI GCNGC 4 cut(s) 117, 369, 372, 450
FspBI CTAG 2 cut(s) 96, 546
GluI GCNGC 4 cut(s) 117, 369, 372, 450
HaeIII GGCC 2 cut(s) 52, 86
HapII CCGG 1 cut(s) 44
Hin1II CATG 3 cut(s) 217, 386, 578
HinfI GANTC 2 cut(s) 199, 312
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 422
HpyAV CCTTC 4 cut(s) 52, 95, 232, 581
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 6 cut(s) 116, 186, 251, 374, 449, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 92
Hsp92II CATG 3 cut(s) 217, 386, 578
Kzo9I GATC 1 cut(s) 422
LguI GCTCTTC 1 cut(s) 545
LpnPI CCDG 3 cut(s) 57, 105, 518
Lsp1109I GCAGC 4 cut(s) 128, 355, 358, 461
MaeI CTAG 2 cut(s) 96, 546
MalI GATC 1 cut(s) 424
MboI GATC 1 cut(s) 422
MboII GAAGA 3 cut(s) 48, 429, 562
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 486, 498
MlyI GAGTC 1 cut(s) 321
MnlI CCTC 4 cut(s) 33, 42, 76, 532
Mph1103I ATGCAT 1 cut(s) 468
MseI TTAA 3 cut(s) 345, 510, 570
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 49, 92
NciI CCSGG 1 cut(s) 45
NdeI CATATG 1 cut(s) 565
NdeII GATC 1 cut(s) 422
NlaIII CATG 3 cut(s) 217, 386, 578
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 386
PciI ACATGT 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 545
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 4 cut(s) 118, 370, 373, 451
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PscI ACATGT 1 cut(s) 382
PshBI ATTAAT 1 cut(s) 345
PstI CTGCAG 1 cut(s) 118
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SapI GCTCTTC 1 cut(s) 545
SaqAI TTAA 3 cut(s) 345, 510, 570
SatI GCNGC 4 cut(s) 117, 369, 372, 450
Sau3AI GATC 1 cut(s) 422
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 284
SetI ASST 6 cut(s) 25, 63, 97, 408, 454, 510
SfcI CTRYAG 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 285, 523
SmoI CTYRAG 2 cut(s) 285, 523
Sse9I AATT 2 cut(s) 486, 498
SspMI CTAG 2 cut(s) 96, 546
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 301
TasI AATT 2 cut(s) 486, 498
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 3 cut(s) 345, 510, 570
Tru9I TTAA 3 cut(s) 345, 510, 570
TscAI CASTG 3 cut(s) 118, 193, 304
TseI GCWGC 4 cut(s) 116, 368, 371, 449
TspDTI ATGAA 2 cut(s) 348, 531
TspRI CASTG 3 cut(s) 118, 193, 304
VspI ATTAAT 1 cut(s) 345
XceI RCATGY 1 cut(s) 386
XspI CTAG 2 cut(s) 96, 546
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.