RLG00000010262

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011620
Physical Location & Seq
Reverse (-)
64834477 .. 64835958
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010262

Sequence Viewer

Length: 591 bp
ATGCAGGGCACTTTCAAAACAATGATGCGGGTGCCTCCACCATTTAGAAGAATGCCGGGGAGGCCAAAAAAAGTTAGGAGAAAGGAAGTAGGAGAGGCCATACCAGCTAGTGAAGGGACAACCACTGCAGCAACTACGAACCCAACAATACCAACATCAAATAAACTACCCAAGATTGTATATGTTGGTGGAAAGTGCAGTGTTTGTGGGAATCCAAAGCATAACATGAGAACTTGCCCCACTCGTAAGAAGGAGACAAATGCAGAGCGAGAAAGTGTAAGTGTAAATGTGAGCACTCAAGGAAATAACATTGTCAATGTGAGAGTCCAAAATCAAGGCAATAATGAAGTAAGTATTAATGTCAGATCCAAACAAGTTAGGAGAAACACAAGTAAGGTTGGTGAAGCATCTGGATCAAAAACAATATCTTCCCAAAGTGCAGCTTCAAACTCTATGCATACATCATCTCAACCATCAATTCCCACAACAATTTTCCAGCTTAACCACTCATCCTCAAGTCAGCCTATTGGTTCATCTAGGAAGAGCAAAGTGTCATATGTTAAAGATGGGACTACTGAAGGGAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

197

Amino Acids

21.16

Weight (kDa)

10.77

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 31
AciI CCGC 1 cut(s) 28
AclWI GGATC 2 cut(s) 360, 421
AgsI TTSAA 2 cut(s) 16, 447
AluBI AGCT 3 cut(s) 107, 443, 499
AluI AGCT 3 cut(s) 107, 443, 499
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 2 cut(s) 360, 421
AoxI GGCC 2 cut(s) 62, 96
ApeKI GCWGC 2 cut(s) 128, 440
AseI ATTAAT 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 140, 452
BccI CCATC 2 cut(s) 481, 560
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 2 cut(s) 108, 537
BfmI CTRYAG 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 2 cut(s) 129, 441
BlsI GCNGC 2 cut(s) 130, 442
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 15, 416
BpuEI CTTGAG 2 cut(s) 282, 499
BpuMI CCSGG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 2 cut(s) 140, 452
BsgI GTGCAG 2 cut(s) 217, 459
BshFI GGCC 2 cut(s) 64, 98
BshNI GGYRCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 130, 583
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 2 cut(s) 130, 583
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 2 cut(s) 64, 98
Bsp1286I GDGCHC 2 cut(s) 11, 296
Bsp143I GATC 2 cut(s) 365, 413
BspACI CCGC 1 cut(s) 28
BspANI GGCC 2 cut(s) 64, 98
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 2 cut(s) 360, 421
BspQI GCTCTTC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 365, 413
Bst6I CTCTTC 1 cut(s) 536
BstF5I GGATG 1 cut(s) 509
BstKTI GATC 2 cut(s) 368, 416
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 365, 413
BstMWI GCNNNNNNNGC 2 cut(s) 61, 104
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 140, 452
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 2 cut(s) 64, 98
BtsCI GGATG 1 cut(s) 509
BtsI GCAGTG 2 cut(s) 123, 205
BtsIMutI CAGTG 2 cut(s) 123, 205
CviAII CATG 1 cut(s) 226
CviJI RGCY 6 cut(s) 64, 98, 107, 443, 499, 523
CviKI_1 RGCY 6 cut(s) 64, 98, 107, 443, 499, 523
DpnI GATC 2 cut(s) 367, 415
DpnII GATC 2 cut(s) 365, 413
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
EcoT22I ATGCAT 1 cut(s) 459
FaeI CATG 1 cut(s) 229
FaiI YATR 9 cut(s) 101, 181, 183, 222, 227, 455, 459, 556, 558
FalI AAGNNNNNCTT 2 cut(s) 427, 459
FaqI GGGAC 2 cut(s) 130, 583
FatI CATG 1 cut(s) 225
FauI CCCGC 1 cut(s) 21
FauNDI CATATG 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 129, 441
FokI GGATG 1 cut(s) 496
Fsp4HI GCNGC 2 cut(s) 129, 441
FspBI CTAG 2 cut(s) 108, 537
GluI GCNGC 2 cut(s) 129, 441
HaeIII GGCC 2 cut(s) 64, 98
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 229
HinfI GANTC 2 cut(s) 211, 324
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 413
Hpy188I TCNGA 1 cut(s) 365
Hpy188III TCNNGA 1 cut(s) 411
HpyAV CCTTC 3 cut(s) 107, 244, 572
HpyCH4V TGCA 6 cut(s) 4, 128, 198, 263, 440, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 104
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 2 cut(s) 365, 413
LguI GCTCTTC 1 cut(s) 536
LpnPI CCDG 4 cut(s) 69, 117, 396, 509
Lsp1109I GCAGC 2 cut(s) 140, 452
LweI GCATC 2 cut(s) 15, 416
MaeI CTAG 2 cut(s) 108, 537
MalI GATC 2 cut(s) 367, 415
MboI GATC 2 cut(s) 365, 413
MboII GAAGA 3 cut(s) 60, 420, 553
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 2 cut(s) 11, 296
MluCI AATT 2 cut(s) 477, 489
MlyI GAGTC 1 cut(s) 333
MnlI CCTC 4 cut(s) 45, 54, 88, 523
Mph1103I ATGCAT 1 cut(s) 459
MseI TTAA 3 cut(s) 357, 501, 561
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 61, 104
NciI CCSGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 556
NdeII GATC 2 cut(s) 365, 413
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 33
NsiI ATGCAT 1 cut(s) 459
PciSI GCTCTTC 1 cut(s) 536
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 130, 442
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PshBI ATTAAT 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 536
SaqAI TTAA 3 cut(s) 357, 501, 561
SatI GCNGC 2 cut(s) 129, 441
Sau3AI GATC 2 cut(s) 365, 413
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 2 cut(s) 11, 296
SetI ASST 4 cut(s) 109, 399, 445, 501
SfaNI GCATC 2 cut(s) 15, 416
SfcI CTRYAG 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 297, 514
SmoI CTYRAG 2 cut(s) 297, 514
Sse9I AATT 2 cut(s) 477, 489
SsiI CCGC 1 cut(s) 28
SspMI CTAG 2 cut(s) 108, 537
StyD4I CCNGG 1 cut(s) 55
TasI AATT 2 cut(s) 477, 489
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 3 cut(s) 357, 501, 561
Tru9I TTAA 3 cut(s) 357, 501, 561
TscAI CASTG 2 cut(s) 130, 205
TseI GCWGC 2 cut(s) 128, 440
TspDTI ATGAA 2 cut(s) 360, 522
TspRI CASTG 2 cut(s) 130, 205
VspI ATTAAT 1 cut(s) 357
XspI CTAG 2 cut(s) 108, 537
Zsp2I ATGCAT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.