Belongs to the enoyl-CoA hydratase isomerase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_1 | PF00076 | 235 - 304 | 2.8e-11 | RNA recognition motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 680 |
| Acc36I | ACCTGC | 2 cut(s) | 680, 970 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1304 |
| AccBSI | CCGCTC | 1 cut(s) | 1822 |
| AccI | GTMKAC | 2 cut(s) | 837, 1967 |
| AccII | CGCG | 2 cut(s) | 326, 1866 |
| AclI | AACGTT | 1 cut(s) | 1852 |
| AclWI | GGATC | 5 cut(s) | 1289, 1514, 1527, 1705, 1737 |
| AcoI | YGGCCR | 3 cut(s) | 51, 905, 1514 |
| AcuI | CTGAAG | 1 cut(s) | 2019 |
| AfaI | GTAC | 1 cut(s) | 1880 |
| AgeI | ACCGGT | 1 cut(s) | 1393 |
| AgsI | TTSAA | 5 cut(s) | 383, 409, 455, 2019, 2040 |
| AjnI | CCWGG | 8 cut(s) | 610, 661, 831, 1159, 1345, 1414, 1543, 1941 |
| AleI | CACNNNNGTG | 2 cut(s) | 426, 552 |
| Alw21I | GWGCWC | 5 cut(s) | 254, 423, 469, 1354, 1941 |
| Alw26I | GTCTC | 1 cut(s) | 1740 |
| Alw44I | GTGCAC | 1 cut(s) | 1937 |
| AlwI | GGATC | 5 cut(s) | 1289, 1514, 1527, 1705, 1737 |
| Ama87I | CYCGRG | 1 cut(s) | 1857 |
| ApaLI | GTGCAC | 1 cut(s) | 1937 |
| ApeKI | GCWGC | 9 cut(s) | 472, 475, 478, 557, 560, 854, 857, 1028, 1411 |
| AsiGI | ACCGGT | 1 cut(s) | 1393 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 791 |
| AspLEI | GCGC | 4 cut(s) | 239, 326, 698, 1310 |
| AsuHPI | GGTGA | 4 cut(s) | 275, 921, 1559, 1601 |
| AvaI | CYCGRG | 1 cut(s) | 1857 |
| AvaII | GGWCC | 6 cut(s) | 100, 659, 1157, 1166, 1974, 2029 |
| BaeGI | GKGCMC | 1 cut(s) | 1941 |
| BamHI | GGATCC | 1 cut(s) | 1519 |
| BanII | GRGCYC | 2 cut(s) | 254, 1354 |
| BbsI | GAAGAC | 1 cut(s) | 1374 |
| Bbv12I | GWGCWC | 5 cut(s) | 254, 423, 469, 1354, 1941 |
| BbvI | GCAGC | 9 cut(s) | 484, 487, 490, 544, 547, 841, 844, 1015, 1398 |
| BccI | CCATC | 7 cut(s) | 53, 313, 869, 1273, 1487, 1533, 1617 |
| BceAI | ACGGC | 5 cut(s) | 25, 38, 82, 167, 2019 |
| BciT130I | CCWGG | 8 cut(s) | 612, 663, 833, 1161, 1347, 1416, 1545, 1943 |
| BclI | TGATCA | 1 cut(s) | 1906 |
| BcoDI | GTCTC | 1 cut(s) | 1740 |
| BfaI | CTAG | 4 cut(s) | 299, 1581, 2025, 2046 |
| BfmI | CTRYAG | 1 cut(s) | 934 |
| BfoI | RGCGCY | 2 cut(s) | 240, 1311 |
| BfuAI | ACCTGC | 2 cut(s) | 680, 970 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 50 |
| BglII | AGATCT | 2 cut(s) | 2021, 2042 |
| BlpI | GCTNAGC | 1 cut(s) | 468 |
| Bme1390I | CCNGG | 8 cut(s) | 612, 663, 833, 1161, 1347, 1416, 1545, 1943 |
| Bme18I | GGWCC | 6 cut(s) | 100, 659, 1157, 1166, 1974, 2029 |
| BmeT110I | CYCGRG | 1 cut(s) | 1857 |
| BmiI | GGNNCC | 8 cut(s) | 19, 222, 974, 1017, 1521, 1844, 1976, 2030 |
| BmrFI | CCNGG | 8 cut(s) | 612, 663, 833, 1161, 1347, 1416, 1545, 1943 |
| BmrI | ACTGGG | 1 cut(s) | 1129 |
| BmsI | GCATC | 8 cut(s) | 490, 727, 870, 1015, 1251, 1449, 1464, 1801 |
| BmuI | ACTGGG | 1 cut(s) | 1129 |
| BpiI | GAAGAC | 1 cut(s) | 1374 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 32, 64 |
| BpmI | CTGGAG | 2 cut(s) | 767, 1437 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 468 |
| BpuEI | CTTGAG | 2 cut(s) | 622, 945 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1728, 1812, 1866 |
| BsaJI | CCNNGG | 4 cut(s) | 78, 861, 1007, 1464 |
| BsaWI | WCCGGW | 1 cut(s) | 1393 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 740, 770 |
| Bse118I | RCCGGY | 1 cut(s) | 1393 |
| Bse1I | ACTGG | 4 cut(s) | 728, 807, 1124, 1694 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1728, 1812, 1866 |
| BseBI | CCWGG | 8 cut(s) | 612, 663, 833, 1161, 1347, 1416, 1545, 1943 |
| BseDI | CCNNGG | 4 cut(s) | 78, 861, 1007, 1464 |
| BseJI | GATNNNNATC | 3 cut(s) | 1728, 1812, 1866 |
| BseMII | CTCAG | 4 cut(s) | 482, 1151, 1283, 2076 |
| BseNI | ACTGG | 4 cut(s) | 728, 807, 1124, 1694 |
| BseRI | GAGGAG | 4 cut(s) | 95, 203, 681, 1565 |
| BseSI | GKGCMC | 1 cut(s) | 1941 |
| BseX3I | CGGCCG | 1 cut(s) | 51 |
| BseXI | GCAGC | 9 cut(s) | 484, 487, 490, 544, 547, 841, 844, 1015, 1398 |
| BseYI | CCCAGC | 2 cut(s) | 1031, 1571 |
| BsgI | GTGCAG | 2 cut(s) | 708, 978 |
| Bsh1236I | CGCG | 2 cut(s) | 326, 1866 |
| Bsh1285I | CGRYCG | 2 cut(s) | 54, 1870 |
| BshTI | ACCGGT | 1 cut(s) | 1393 |
| BsiEI | CGRYCG | 2 cut(s) | 54, 1870 |
| BsiHKAI | GWGCWC | 5 cut(s) | 254, 423, 469, 1354, 1941 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1857 |
| BsiSI | CCGG | 3 cut(s) | 209, 1394, 1517 |
| BslFI | GGGAC | 3 cut(s) | 1700, 1838, 2042 |
| BsmAI | GTCTC | 1 cut(s) | 1740 |
| BsmFI | GGGAC | 3 cut(s) | 1700, 1838, 2042 |
| BsmI | GAATGC | 1 cut(s) | 1657 |
| BsoBI | CYCGRG | 1 cut(s) | 1857 |
| Bsp1286I | GDGCHC | 5 cut(s) | 254, 423, 469, 1354, 1941 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 468 |
| Bsp19I | CCATGG | 2 cut(s) | 861, 1464 |
| Bsp68I | TCGCGA | 1 cut(s) | 1866 |
| BspCNI | CTCAG | 4 cut(s) | 481, 1150, 1282, 2077 |
| BspFNI | CGCG | 2 cut(s) | 326, 1866 |
| BspHI | TCATGA | 2 cut(s) | 1630, 1774 |
| BspLI | GGNNCC | 8 cut(s) | 19, 222, 974, 1017, 1521, 1844, 1976, 2030 |
| BspMI | ACCTGC | 2 cut(s) | 680, 970 |
| BspPI | GGATC | 5 cut(s) | 1289, 1514, 1527, 1705, 1737 |
| BsrBI | CCGCTC | 1 cut(s) | 1822 |
| BsrFI | RCCGGY | 1 cut(s) | 1393 |
| BsrI | ACTGG | 4 cut(s) | 728, 807, 1124, 1694 |
| BssAI | RCCGGY | 1 cut(s) | 1393 |
| BssECI | CCNNGG | 4 cut(s) | 78, 861, 1007, 1464 |
| BssT1I | CCWWGG | 3 cut(s) | 861, 1007, 1464 |
| Bst2UI | CCWGG | 8 cut(s) | 612, 663, 833, 1161, 1347, 1416, 1545, 1943 |
| Bst4CI | ACNGT | 7 cut(s) | 35, 543, 551, 641, 656, 1936, 2012 |
| Bst6I | CTCTTC | 1 cut(s) | 2060 |
| BstC8I | GCNNGC | 3 cut(s) | 393, 868, 1990 |
| BstDEI | CTNAG | 4 cut(s) | 468, 1137, 1269, 2085 |
| BstDSI | CCRYGG | 2 cut(s) | 861, 1464 |
| BstEII | GGTNACC | 1 cut(s) | 982 |
| BstFNI | CGCG | 2 cut(s) | 326, 1866 |
| BstH2I | RGCGCY | 2 cut(s) | 240, 1311 |
| BstHHI | GCGC | 4 cut(s) | 239, 326, 698, 1310 |
| BstMAI | GTCTC | 1 cut(s) | 1740 |
| BstMCI | CGRYCG | 2 cut(s) | 54, 1870 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 50, 258, 478, 484, 695, 863, 1307 |
| BstNI | CCWGG | 8 cut(s) | 612, 663, 833, 1161, 1347, 1416, 1545, 1943 |
| BstNSI | RCATGY | 1 cut(s) | 1753 |
| BstPI | GGTNACC | 1 cut(s) | 982 |
| BstSCI | CCNGG | 8 cut(s) | 610, 661, 831, 1159, 1345, 1414, 1543, 1941 |
| BstSFI | CTRYAG | 1 cut(s) | 934 |
| BstSLI | GKGCMC | 1 cut(s) | 1941 |
| BstUI | CGCG | 2 cut(s) | 326, 1866 |
| BstV1I | GCAGC | 9 cut(s) | 484, 487, 490, 544, 547, 841, 844, 1015, 1398 |
| BstV2I | GAAGAC | 1 cut(s) | 1374 |
| BstX2I | RGATCY | 4 cut(s) | 1519, 1697, 2021, 2042 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1616 |
| BstYI | RGATCY | 4 cut(s) | 1519, 1697, 2021, 2042 |
| BstZI | CGGCCG | 1 cut(s) | 51 |
| BtgI | CCRYGG | 2 cut(s) | 861, 1464 |
| BtsI | GCAGTG | 1 cut(s) | 367 |
| BtsIMutI | CAGTG | 5 cut(s) | 367, 661, 682, 721, 814 |
| BtuMI | TCGCGA | 1 cut(s) | 1866 |
| BveI | ACCTGC | 2 cut(s) | 680, 970 |
| Cac8I | GCNNGC | 3 cut(s) | 393, 868, 1990 |
| CciI | TCATGA | 2 cut(s) | 1630, 1774 |
| CfoI | GCGC | 4 cut(s) | 239, 326, 698, 1310 |
| Cfr10I | RCCGGY | 1 cut(s) | 1393 |
| CseI | GACGC | 1 cut(s) | 384 |
| CsiI | ACCWGGT | 1 cut(s) | 610 |
| Csp6I | GTAC | 1 cut(s) | 1879 |
| CspAI | ACCGGT | 1 cut(s) | 1393 |
| CviAII | CATG | 9 cut(s) | 862, 884, 909, 1430, 1465, 1556, 1631, 1750, 1775 |
| CviQI | GTAC | 1 cut(s) | 1879 |
| DdeI | CTNAG | 4 cut(s) | 468, 1137, 1269, 2085 |
| DraI | TTTAAA | 1 cut(s) | 172 |
| EaeI | YGGCCR | 3 cut(s) | 51, 905, 1514 |
| EagI | CGGCCG | 1 cut(s) | 51 |
| Eam1104I | CTCTTC | 1 cut(s) | 2060 |
| EarI | CTCTTC | 1 cut(s) | 2060 |
| EciI | GGCGGA | 1 cut(s) | 767 |
| Ecl136II | GAGCTC | 2 cut(s) | 252, 1352 |
| EclXI | CGGCCG | 1 cut(s) | 51 |
| Eco130I | CCWWGG | 3 cut(s) | 861, 1007, 1464 |
| Eco24I | GRGCYC | 2 cut(s) | 254, 1354 |
| Eco47I | GGWCC | 6 cut(s) | 100, 659, 1157, 1166, 1974, 2029 |
| Eco52I | CGGCCG | 1 cut(s) | 51 |
| Eco53kI | GAGCTC | 2 cut(s) | 252, 1352 |
| Eco57I | CTGAAG | 1 cut(s) | 2019 |
| Eco88I | CYCGRG | 1 cut(s) | 1857 |
| Eco91I | GGTNACC | 1 cut(s) | 982 |
| EcoICRI | GAGCTC | 2 cut(s) | 252, 1352 |
| EcoO109I | RGGNCCY | 4 cut(s) | 100, 350, 1016, 1974 |
| EcoO65I | GGTNACC | 1 cut(s) | 982 |
| EcoRII | CCWGG | 8 cut(s) | 610, 661, 831, 1159, 1345, 1414, 1543, 1941 |
| EcoT14I | CCWWGG | 3 cut(s) | 861, 1007, 1464 |
| EcoT22I | ATGCAT | 1 cut(s) | 885 |
| EcoT38I | GRGCYC | 2 cut(s) | 254, 1354 |
| ErhI | CCWWGG | 3 cut(s) | 861, 1007, 1464 |
| FaeI | CATG | 9 cut(s) | 865, 887, 912, 1433, 1468, 1559, 1634, 1753, 1778 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1976, 2008 |
| FaqI | GGGAC | 3 cut(s) | 1700, 1838, 2042 |
| FatI | CATG | 9 cut(s) | 861, 883, 908, 1429, 1464, 1555, 1630, 1749, 1774 |
| FauI | CCCGC | 1 cut(s) | 1815 |
| FbaI | TGATCA | 1 cut(s) | 1906 |
| FblI | GTMKAC | 2 cut(s) | 837, 1967 |
| FriOI | GRGCYC | 2 cut(s) | 254, 1354 |
| FspBI | CTAG | 4 cut(s) | 299, 1581, 2025, 2046 |
| GlaI | GCGC | 4 cut(s) | 238, 325, 697, 1309 |
| GsaI | CCCAGC | 2 cut(s) | 1035, 1575 |
| GsuI | CTGGAG | 2 cut(s) | 767, 1437 |
| HaeII | RGCGCY | 2 cut(s) | 240, 1311 |
| HapII | CCGG | 3 cut(s) | 209, 1394, 1517 |
| HgaI | GACGC | 1 cut(s) | 384 |
| HhaI | GCGC | 4 cut(s) | 239, 326, 698, 1310 |
| Hin1II | CATG | 9 cut(s) | 865, 887, 912, 1433, 1468, 1559, 1634, 1753, 1778 |
| Hin6I | GCGC | 4 cut(s) | 237, 324, 696, 1308 |
| HinP1I | GCGC | 4 cut(s) | 237, 324, 696, 1308 |
| HinfI | GANTC | 5 cut(s) | 295, 672, 848, 1435, 1577 |
| HpaII | CCGG | 3 cut(s) | 209, 1394, 1517 |
| HphI | GGTGA | 4 cut(s) | 275, 921, 1559, 1601 |
| Hpy166II | GTNNAC | 5 cut(s) | 637, 729, 838, 1939, 1968 |
| Hpy8I | GTNNAC | 5 cut(s) | 637, 729, 838, 1939, 1968 |
| Hpy99I | CGWCG | 9 cut(s) | 11, 17, 59, 65, 68, 92, 188, 400, 2016 |
| HpyAV | CCTTC | 4 cut(s) | 190, 772, 1654, 1782 |
| HpyCH4III | ACNGT | 7 cut(s) | 35, 543, 551, 641, 656, 1936, 2012 |
| HpyCH4IV | ACGT | 1 cut(s) | 1852 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 50, 258, 478, 484, 695, 863, 1307 |
| HpyF3I | CTNAG | 4 cut(s) | 468, 1137, 1269, 2085 |
| HpySE526I | ACGT | 1 cut(s) | 1852 |
| Hsp92II | CATG | 9 cut(s) | 865, 887, 912, 1433, 1468, 1559, 1634, 1753, 1778 |
| HspAI | GCGC | 4 cut(s) | 237, 324, 696, 1308 |
| Ksp22I | TGATCA | 1 cut(s) | 1906 |
| LmnI | GCTCC | 8 cut(s) | 17, 226, 244, 770, 1315, 1349, 1357, 1552 |
| Lsp1109I | GCAGC | 9 cut(s) | 484, 487, 490, 544, 547, 841, 844, 1015, 1398 |
| LweI | GCATC | 8 cut(s) | 490, 727, 870, 1015, 1251, 1449, 1464, 1801 |
| MabI | ACCWGGT | 1 cut(s) | 610 |
| MaeI | CTAG | 4 cut(s) | 299, 1581, 2025, 2046 |
| MaeII | ACGT | 1 cut(s) | 1852 |
| MaeIII | GTNAC | 4 cut(s) | 35, 543, 982, 1871 |
| MbiI | CCGCTC | 1 cut(s) | 1822 |
| MboII | GAAGA | 8 cut(s) | 205, 1332, 1374, 1692, 1733, 1898, 2012, 2077 |
| MflI | RGATCY | 4 cut(s) | 1519, 1697, 2021, 2042 |
| MhlI | GDGCHC | 5 cut(s) | 254, 423, 469, 1354, 1941 |
| MluCI | AATT | 5 cut(s) | 383, 404, 491, 1072, 1132 |
| MlyI | GAGTC | 1 cut(s) | 1586 |
| MmeI | TCCRAC | 1 cut(s) | 601 |
| Mph1103I | ATGCAT | 1 cut(s) | 885 |
| MroXI | GAANNNNTTC | 1 cut(s) | 791 |
| MseI | TTAA | 4 cut(s) | 171, 897, 942, 1812 |
| MslI | CAYNNNNRTG | 8 cut(s) | 426, 552, 1469, 1560, 1614, 1779, 1797, 1944 |
| MspI | CCGG | 3 cut(s) | 209, 1394, 1517 |
| MspR9I | CCNGG | 8 cut(s) | 612, 663, 833, 1161, 1347, 1416, 1545, 1943 |
| Mva1269I | GAATGC | 1 cut(s) | 1657 |
| MvaI | CCWGG | 8 cut(s) | 612, 663, 833, 1161, 1347, 1416, 1545, 1943 |
| MvnI | CGCG | 2 cut(s) | 326, 1866 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 50, 258, 478, 484, 695, 863, 1307 |
| NcoI | CCATGG | 2 cut(s) | 861, 1464 |
| NlaIII | CATG | 9 cut(s) | 865, 887, 912, 1433, 1468, 1559, 1634, 1753, 1778 |
| NlaIV | GGNNCC | 8 cut(s) | 19, 222, 974, 1017, 1521, 1844, 1976, 2030 |
| NmeAIII | GCCGAG | 3 cut(s) | 29, 103, 1871 |
| NmuCI | GTSAC | 1 cut(s) | 1871 |
| NruI | TCGCGA | 1 cut(s) | 1866 |
| NsiI | ATGCAT | 1 cut(s) | 885 |
| NspI | RCATGY | 1 cut(s) | 1753 |
| OliI | CACNNNNGTG | 2 cut(s) | 426, 552 |
| PaeR7I | CTCGAG | 1 cut(s) | 1857 |
| PagI | TCATGA | 2 cut(s) | 1630, 1774 |
| PaqCI | CACCTGC | 1 cut(s) | 680 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 93, 183 |
| PctI | GAATGC | 1 cut(s) | 1657 |
| PdmI | GAANNNNTTC | 1 cut(s) | 791 |
| PfeI | GAWTC | 4 cut(s) | 295, 672, 848, 1435 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1304 |
| PfoI | TCCNGGA | 2 cut(s) | 661, 1345 |
| PinAI | ACCGGT | 1 cut(s) | 1393 |
| Ple19I | CGATCG | 1 cut(s) | 1870 |
| PleI | GAGTC | 1 cut(s) | 1585 |
| PpsI | GAGTC | 1 cut(s) | 1585 |
| PpuMI | RGGWCCY | 2 cut(s) | 100, 1974 |
| Psp124BI | GAGCTC | 2 cut(s) | 254, 1354 |
| Psp1406I | AACGTT | 1 cut(s) | 1852 |
| Psp5II | RGGWCCY | 2 cut(s) | 100, 1974 |
| Psp6I | CCWGG | 8 cut(s) | 610, 661, 831, 1159, 1345, 1414, 1543, 1941 |
| PspEI | GGTNACC | 1 cut(s) | 982 |
| PspFI | CCCAGC | 2 cut(s) | 1031, 1571 |
| PspGI | CCWGG | 8 cut(s) | 610, 661, 831, 1159, 1345, 1414, 1543, 1941 |
| PspN4I | GGNNCC | 8 cut(s) | 19, 222, 974, 1017, 1521, 1844, 1976, 2030 |
| PspPPI | RGGWCCY | 2 cut(s) | 100, 1974 |
| PsuI | RGATCY | 4 cut(s) | 1519, 1697, 2021, 2042 |
| PvuI | CGATCG | 1 cut(s) | 1870 |
| RruI | TCGCGA | 1 cut(s) | 1866 |
| RsaI | GTAC | 1 cut(s) | 1880 |
| RsaNI | GTAC | 1 cut(s) | 1879 |
| RseI | CAYNNNNRTG | 8 cut(s) | 426, 552, 1469, 1560, 1614, 1779, 1797, 1944 |
| SacI | GAGCTC | 2 cut(s) | 254, 1354 |
| SaqAI | TTAA | 4 cut(s) | 171, 897, 942, 1812 |
| SchI | GAGTC | 1 cut(s) | 1586 |
| ScrFI | CCNGG | 8 cut(s) | 612, 663, 833, 1161, 1347, 1416, 1545, 1943 |
| SduI | GDGCHC | 5 cut(s) | 254, 423, 469, 1354, 1941 |
| SexAI | ACCWGGT | 1 cut(s) | 610 |
| SfaNI | GCATC | 8 cut(s) | 490, 727, 870, 1015, 1251, 1449, 1464, 1801 |
| SfcI | CTRYAG | 1 cut(s) | 934 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 50 |
| Sfr274I | CTCGAG | 1 cut(s) | 1857 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1393 |
| SinI | GGWCC | 6 cut(s) | 100, 659, 1157, 1166, 1974, 2029 |
| SlaI | CTCGAG | 1 cut(s) | 1857 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 426, 552, 1469, 1560, 1614, 1779, 1797, 1944 |
| SmlI | CTYRAG | 3 cut(s) | 601, 960, 1857 |
| SmoI | CTYRAG | 3 cut(s) | 601, 960, 1857 |
| Sse9I | AATT | 5 cut(s) | 383, 404, 491, 1072, 1132 |
| SspMI | CTAG | 4 cut(s) | 299, 1581, 2025, 2046 |
| SstI | GAGCTC | 2 cut(s) | 254, 1354 |
| StyD4I | CCNGG | 8 cut(s) | 610, 661, 831, 1159, 1345, 1414, 1543, 1941 |
| StyI | CCWWGG | 3 cut(s) | 861, 1007, 1464 |
| TaaI | ACNGT | 7 cut(s) | 35, 543, 551, 641, 656, 1936, 2012 |
| TaiI | ACGT | 1 cut(s) | 1855 |
| TaqI | TCGA | 5 cut(s) | 186, 398, 795, 1816, 1858 |
| TasI | AATT | 5 cut(s) | 383, 404, 491, 1072, 1132 |
| TauI | GCSGC | 3 cut(s) | 907, 2074, 2077 |
| TfiI | GAWTC | 4 cut(s) | 295, 672, 848, 1435 |
| Tru1I | TTAA | 4 cut(s) | 171, 897, 942, 1812 |
| Tru9I | TTAA | 4 cut(s) | 171, 897, 942, 1812 |
| TscAI | CASTG | 5 cut(s) | 367, 661, 682, 728, 814 |
| TseFI | GTSAC | 1 cut(s) | 1871 |
| TseI | GCWGC | 9 cut(s) | 472, 475, 478, 557, 560, 854, 857, 1028, 1411 |
| Tsp45I | GTSAC | 1 cut(s) | 1871 |
| TspDTI | ATGAA | 4 cut(s) | 1374, 1673, 1797, 1962 |
| TspGWI | ACGGA | 2 cut(s) | 30, 749 |
| TspRI | CASTG | 5 cut(s) | 367, 661, 682, 728, 814 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1304 |
| VneI | GTGCAC | 1 cut(s) | 1937 |
| VpaK11BI | GGWCC | 6 cut(s) | 100, 659, 1157, 1166, 1974, 2029 |
| XceI | RCATGY | 1 cut(s) | 1753 |
| XhoI | CTCGAG | 1 cut(s) | 1857 |
| XmiI | GTMKAC | 2 cut(s) | 837, 1967 |
| XmnI | GAANNNNTTC | 1 cut(s) | 791 |
| XspI | CTAG | 4 cut(s) | 299, 1581, 2025, 2046 |
| Zsp2I | ATGCAT | 1 cut(s) | 885 |