Rorug01G0010600

Belongs to the chalcone stilbene synthases family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
1822960 .. 1823873
914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0010600.1

Sequence Viewer

Length: 279 bp
ATGGCTTATGGTACAGAGGCTGATGTCTGGAGCGTAGGTCATCCCTGCCTTGAACATCATAACACTGTTAAACTTCCTCTGGACATAATAATATTCAAGCTCATGAAGGTATATATGCGCTTATCACCTCTCCGCAAAACTGCTTTAAGGGGAGTTTTTTGCTCAGCTTTCCAGGTTGGTGTATCAACATGGTGTCTTAACATGACAGGGCCGATTTTTGTATCTATGTTCAAGCCTTTGGGGATCGTAGTTGCAGTTGCCACTGGTTTTGGAGTGTAG

Protein Analysis

92

Amino Acids

10.12

Weight (kDa)

9.26

Isoelectric Point (pI)

12.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 251
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 3 cut(s) 53, 97, 232
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 100, 167
AluI AGCT 2 cut(s) 100, 167
AlwI GGATC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 173
BlpI GCTNAGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 49
Bpu1102I GCTNAGC 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 268
BshFI GGCC 1 cut(s) 211
BsnI GGCC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 243
Bsp1720I GCTNAGC 1 cut(s) 163
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 102
BspPI GGATC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 268
BssMI GATC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 2 cut(s) 63, 261
CaiI CAGNNNCTG 1 cut(s) 20
CciI TCATGA 1 cut(s) 102
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 12
CspCI CAANNNNNGTGG 1 cut(s) 250
CviAII CATG 3 cut(s) 103, 189, 202
CviJI RGCY 6 cut(s) 5, 20, 100, 167, 211, 235
CviKI_1 RGCY 6 cut(s) 5, 20, 100, 167, 211, 235
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 3 cut(s) 106, 192, 205
FatI CATG 3 cut(s) 102, 188, 201
FokI GGATG 1 cut(s) 27
GlaI GCGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 49
HaeIII GGCC 1 cut(s) 211
HhaI GCGC 1 cut(s) 120
Hin1II CATG 3 cut(s) 106, 192, 205
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HphI GGTGA 1 cut(s) 117
Hpy188III TCNNGA 3 cut(s) 28, 80, 103
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 3 cut(s) 106, 192, 205
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 7 cut(s) 13, 58, 65, 158, 185, 192, 249
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MnlI CCTC 3 cut(s) 10, 87, 138
MseI TTAA 3 cut(s) 69, 146, 198
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
NdeII GATC 1 cut(s) 243
NlaIII CATG 3 cut(s) 106, 192, 205
PagI TCATGA 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspPI GGNCC 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 69, 146, 198
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 173
SetI ASST 6 cut(s) 40, 102, 111, 130, 169, 177
SsiI CCGC 1 cut(s) 133
SspI AATATT 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 67
Tru1I TTAA 3 cut(s) 69, 146, 198
Tru9I TTAA 3 cut(s) 69, 146, 198
TscAI CASTG 2 cut(s) 70, 268
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 2 cut(s) 70, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.