Rroxscaffold_7G00171030

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000409
Physical Location & Seq
Reverse (-)
11432941 .. 11436107
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171030.1

Sequence Viewer

Length: 1161 bp
ATGAAGGCACTGGATAAGGGCTGCATAGAGGGAAACAGTAAAAATTCTTGCAAGTGTGTTCCCCTCGGAAACTCAAGAAAACATTATCTAGACGAAGAAAGGGAATTTTGGAAGGGGAGGCGTGAAAAGTCGATGGTAAAGAAGCGATATCTGGGCGTCACAGAAGAGAGTCTAAAAGCCAACCCTAATATATGCAGCTACAAGGCTCCCTCACTCGACGCACGTCAAGACTTACTGATTCACGAGGTCCCCAAACTCGGTAAAGAAGCGGCGTTGAAGGCCATCAGAGAATGGGGCCAACCCATTTCAAGCCTCACCCACCTCATCTTCTGCACAGCTTCCTGCGTCGACATGCCTGGTGCCGACTTTCAGCTCGTCAAGCTCCTCGGCCTAAATCCATCTATCAACAGGTTCATGATCTACCAGCAAGGCTGCTTTGCTGGTGGGACGGTGCTACGGATTGCCAAGGACGTGGCCGAGAACAATGCCGGAGCTCGTGTTCTGATCCCACTTGGATGTTTTGGTCGGACTCTGTTTTCGGACGGTGCTGCGGCTTTGATTGTTGGGGCCAATCCGGACCCCAAAAGTGAACGTCAACTGTTCAATATCATGTCTGTTAGAGGGACTATTATCCCAAACTCGGAGCATGGAGTTGTGGCACATTTGCGTGAGATGGGGTTTGACTGTTTGAAAGTTCCAAAGTTGGTTGGTGGGAAAATCGAAGAGTGTTTGAGTAAAGGGTTTGAGGGCATTGGGGTTAATGGTGATTGGAACTCGTTGTTCTTTAGTGTTCATCCTGGGGGTCCTGCAATTCTGGACAAGGTTGAAGAAGAGCTGGGTTTGAAGGAGGGGAAGCTGAAGGCAACAAGGCATGTGCTGAGTGAGTTTGGGAATATGGGAGCTCCATCTGTGCTTTTTATTTTGGATGAGATGAGGAAGAAGTCAACGGAGGAAGCAAAAGCCACAACTGGTGAAGGTTGGAATGGGATTTTCCACCGTCCTCCTCCACAGCGAATCTCGTATTCGTCGATCAACAATTCAGCTCTCTCATTCTTGAAACCGTTTCCTTGCTCCCGCCTAATACTCAAAACACCTACGCTCGTCCTTATTGCAGATGATGAGGATGAGGCACCATCAACCCTACGATTTACCACAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

386

Amino Acids

42.32

Weight (kDa)

8.67

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 42 - 169 3.1e-58 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C PF02797 205 - 327 6e-36 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 359, 1129
AccI GTMKAC 1 cut(s) 348
AccIII TCCGGA 1 cut(s) 574
AciI CCGC 3 cut(s) 269, 551, 1075
AclWI GGATC 1 cut(s) 499
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 2 cut(s) 43, 104
AcuI CTGAAG 1 cut(s) 878
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 257, 640
AgsI TTSAA 7 cut(s) 277, 309, 604, 691, 827, 844, 1057
AjiI CACGTC 2 cut(s) 224, 472
AjnI CCWGG 2 cut(s) 355, 796
AloI GAACNNNNNNTCC 2 cut(s) 483, 515
AluBI AGCT 9 cut(s) 198, 338, 373, 382, 494, 835, 856, 902, 1043
AluI AGCT 9 cut(s) 198, 338, 373, 382, 494, 835, 856, 902, 1043
Alw21I GWGCWC 2 cut(s) 496, 904
AlwI GGATC 1 cut(s) 499
Aor13HI TCCGGA 1 cut(s) 574
AoxI GGCC 5 cut(s) 279, 295, 388, 474, 567
ApeKI GCWGC 4 cut(s) 21, 195, 432, 548
ApoI RAATTY 2 cut(s) 43, 104
ArsI GACNNNNNNTTYG 2 cut(s) 520, 552
AspS9I GGNCC 5 cut(s) 247, 295, 567, 577, 803
AsuHPI GGTGA 3 cut(s) 307, 776, 983
AvaII GGWCC 3 cut(s) 247, 577, 803
BanI GGYRCC 2 cut(s) 359, 1129
BanII GRGCYC 2 cut(s) 496, 904
BauI CACGAG 2 cut(s) 242, 495
Bbv12I GWGCWC 2 cut(s) 496, 904
BbvI GCAGC 4 cut(s) 8, 207, 419, 535
BccI CCATC 6 cut(s) 127, 290, 406, 667, 913, 1141
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 2 cut(s) 357, 798
BfaI CTAG 1 cut(s) 89
BisI GCNGC 6 cut(s) 22, 196, 270, 433, 549, 552
BlsI GCNGC 6 cut(s) 23, 197, 271, 434, 550, 553
Bme1390I CCNGG 2 cut(s) 357, 798
Bme18I GGWCC 3 cut(s) 247, 577, 803
BmgBI CACGTC 2 cut(s) 224, 472
BmgT120I GGNCC 5 cut(s) 247, 295, 567, 577, 803
BmiI GGNNCC 8 cut(s) 207, 249, 296, 361, 568, 579, 804, 1131
BmrFI CCNGG 2 cut(s) 357, 798
BoxI GACNNNNGTC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 4 cut(s) 64, 385, 465, 797
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 640
Bse1I ACTGG 2 cut(s) 15, 973
BseAI TCCGGA 1 cut(s) 574
BseBI CCWGG 2 cut(s) 357, 798
BseDI CCNNGG 4 cut(s) 64, 385, 465, 797
BseGI GGATG 4 cut(s) 521, 793, 931, 1129
BseLI CCNNNNNNNGG 2 cut(s) 257, 640
BseMII CTCAG 1 cut(s) 869
BseNI ACTGG 2 cut(s) 15, 973
BseRI GAGGAG 2 cut(s) 374, 993
BseXI GCAGC 4 cut(s) 8, 207, 419, 535
BseYI CCCAGC 1 cut(s) 835
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 5 cut(s) 281, 297, 390, 476, 569
BshNI GGYRCC 2 cut(s) 359, 1129
BsiHKAI GWGCWC 2 cut(s) 496, 904
BsiSI CCGG 2 cut(s) 489, 575
BslFI GGGAC 3 cut(s) 233, 460, 637
BslI CCNNNNNNNGG 2 cut(s) 257, 640
BsmFI GGGAC 3 cut(s) 233, 460, 637
BsnI GGCC 5 cut(s) 281, 297, 390, 476, 569
Bsp1286I GDGCHC 2 cut(s) 496, 904
Bsp13I TCCGGA 1 cut(s) 574
Bsp143I GATC 3 cut(s) 417, 504, 1029
BspACI CCGC 3 cut(s) 269, 551, 1075
BspANI GGCC 5 cut(s) 281, 297, 390, 476, 569
BspCNI CTCAG 1 cut(s) 870
BspEI TCCGGA 1 cut(s) 574
BspHI TCATGA 1 cut(s) 414
BspLI GGNNCC 8 cut(s) 207, 249, 296, 361, 568, 579, 804, 1131
BspPI GGATC 1 cut(s) 499
BspQI GCTCTTC 1 cut(s) 825
BspT107I GGYRCC 2 cut(s) 359, 1129
BsrI ACTGG 2 cut(s) 15, 973
BssECI CCNNGG 4 cut(s) 64, 385, 465, 797
BssMI GATC 3 cut(s) 417, 504, 1029
BssNI GRCGYC 1 cut(s) 156
BssSI CACGAG 2 cut(s) 242, 495
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 2 cut(s) 242, 495
Bst2UI CCWGG 2 cut(s) 357, 798
Bst4CI ACNGT 7 cut(s) 38, 451, 545, 600, 686, 998, 1062
Bst6I CTCTTC 3 cut(s) 159, 717, 825
BstACI GRCGYC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 878
BstF5I GGATG 4 cut(s) 521, 793, 931, 1129
BstKTI GATC 3 cut(s) 420, 507, 1032
BstMBI GATC 3 cut(s) 417, 504, 1029
BstMWI GCNNNNNNNGC 2 cut(s) 278, 379
BstNI CCWGG 2 cut(s) 357, 798
BstNSI RCATGY 2 cut(s) 355, 875
BstPAI GACNNNNGTC 1 cut(s) 222
BstSCI CCNGG 2 cut(s) 355, 796
BstV1I GCAGC 4 cut(s) 8, 207, 419, 535
BstXI CCANNNNNNTGG 1 cut(s) 472
BsuRI GGCC 5 cut(s) 281, 297, 390, 476, 569
BtrI CACGTC 2 cut(s) 224, 472
BtsCI GGATG 4 cut(s) 521, 793, 931, 1129
BtsIMutI CAGTG 1 cut(s) 8
CciI TCATGA 1 cut(s) 414
Cfr13I GGNCC 5 cut(s) 247, 295, 567, 577, 803
CseI GACGC 3 cut(s) 145, 227, 334
CviAII CATG 5 cut(s) 352, 415, 610, 647, 872
DdeI CTNAG 1 cut(s) 878
DpnI GATC 3 cut(s) 419, 506, 1031
DpnII GATC 3 cut(s) 417, 504, 1029
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 3 cut(s) 159, 717, 825
EarI CTCTTC 3 cut(s) 159, 717, 825
Ecl136II GAGCTC 2 cut(s) 494, 902
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 2 cut(s) 496, 904
Eco32I GATATC 1 cut(s) 149
Eco47I GGWCC 3 cut(s) 247, 577, 803
Eco53kI GAGCTC 2 cut(s) 494, 902
Eco57I CTGAAG 1 cut(s) 878
EcoICRI GAGCTC 2 cut(s) 494, 902
EcoO109I RGGNCCY 2 cut(s) 247, 803
EcoRII CCWGG 2 cut(s) 355, 796
EcoRV GATATC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 496, 904
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 5 cut(s) 355, 418, 613, 650, 875
FaiI YATR 9 cut(s) 26, 191, 193, 353, 416, 611, 648, 873, 896
FaqI GGGAC 3 cut(s) 233, 460, 637
FatI CATG 5 cut(s) 351, 414, 609, 646, 871
FauI CCCGC 1 cut(s) 1082
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 6 cut(s) 22, 196, 270, 433, 549, 552
FokI GGATG 4 cut(s) 528, 780, 938, 1136
FriOI GRGCYC 2 cut(s) 496, 904
Fsp4HI GCNGC 6 cut(s) 22, 196, 270, 433, 549, 552
FspBI CTAG 1 cut(s) 89
GluI GCNGC 6 cut(s) 22, 196, 270, 433, 549, 552
GsaI CCCAGC 1 cut(s) 839
HaeIII GGCC 5 cut(s) 281, 297, 390, 476, 569
HapII CCGG 2 cut(s) 489, 575
HgaI GACGC 3 cut(s) 145, 227, 334
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 5 cut(s) 355, 418, 613, 650, 875
HincII GTYRAC 3 cut(s) 349, 596, 945
HindII GTYRAC 3 cut(s) 349, 596, 945
HinfI GANTC 4 cut(s) 169, 238, 529, 1014
HpaII CCGG 2 cut(s) 489, 575
HphI GGTGA 3 cut(s) 307, 776, 983
Hpy166II GTNNAC 4 cut(s) 349, 590, 596, 945
Hpy188I TCNGA 6 cut(s) 68, 287, 504, 528, 541, 643
Hpy188III TCNNGA 8 cut(s) 75, 89, 227, 242, 415, 575, 815, 1054
Hpy8I GTNNAC 4 cut(s) 349, 590, 596, 945
Hpy99I CGWCG 3 cut(s) 221, 350, 1030
HpyAV CCTTC 5 cut(s) 106, 271, 838, 853, 968
HpyCH4III ACNGT 7 cut(s) 38, 451, 545, 600, 686, 998, 1062
HpyCH4IV ACGT 3 cut(s) 223, 471, 592
HpyCH4V TGCA 6 cut(s) 24, 51, 195, 333, 809, 1112
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 379
HpyF3I CTNAG 1 cut(s) 878
HpySE526I ACGT 3 cut(s) 223, 471, 592
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 5 cut(s) 355, 418, 613, 650, 875
Kpn2I TCCGGA 1 cut(s) 574
Kzo9I GATC 3 cut(s) 417, 504, 1029
LguI GCTCTTC 1 cut(s) 825
LmnI GCTCC 7 cut(s) 211, 387, 491, 643, 899, 907, 1076
Lsp1109I GCAGC 4 cut(s) 8, 207, 419, 535
MaeI CTAG 1 cut(s) 89
MaeII ACGT 3 cut(s) 223, 471, 592
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 419, 506, 1031
MboI GATC 3 cut(s) 417, 504, 1029
MboII GAAGA 7 cut(s) 107, 176, 319, 734, 839, 842, 949
MhlI GDGCHC 2 cut(s) 496, 904
MluCI AATT 4 cut(s) 43, 104, 810, 1036
MlyI GAGTC 2 cut(s) 178, 523
MmeI TCCRAC 2 cut(s) 506, 959
MroI TCCGGA 1 cut(s) 574
MseI TTAA 1 cut(s) 759
MslI CAYNNNNRTG 2 cut(s) 514, 666
MspI CCGG 2 cut(s) 489, 575
MspR9I CCNGG 2 cut(s) 357, 798
MvaI CCWGG 2 cut(s) 357, 798
MwoI GCNNNNNNNGC 2 cut(s) 278, 379
NdeII GATC 3 cut(s) 417, 504, 1029
NlaIII CATG 5 cut(s) 355, 418, 613, 650, 875
NlaIV GGNNCC 8 cut(s) 207, 249, 296, 361, 568, 579, 804, 1131
NmeAIII GCCGAG 2 cut(s) 366, 502
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 2 cut(s) 355, 875
PagI TCATGA 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 825
PcsI WCGNNNNNNNCGW 1 cut(s) 1025
PfeI GAWTC 2 cut(s) 238, 1014
PkrI GCNGC 6 cut(s) 23, 197, 271, 434, 550, 553
PleI GAGTC 2 cut(s) 177, 523
PpsI GAGTC 2 cut(s) 177, 523
PpuMI RGGWCCY 2 cut(s) 247, 803
PshAI GACNNNNGTC 1 cut(s) 222
Psp124BI GAGCTC 2 cut(s) 496, 904
Psp5II RGGWCCY 2 cut(s) 247, 803
Psp6I CCWGG 2 cut(s) 355, 796
PspFI CCCAGC 1 cut(s) 835
PspGI CCWGG 2 cut(s) 355, 796
PspN4I GGNNCC 8 cut(s) 207, 249, 296, 361, 568, 579, 804, 1131
PspPI GGNCC 5 cut(s) 247, 295, 567, 577, 803
PspPPI RGGWCCY 2 cut(s) 247, 803
RseI CAYNNNNRTG 2 cut(s) 514, 666
SacI GAGCTC 2 cut(s) 496, 904
SalI GTCGAC 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 825
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 6 cut(s) 22, 196, 270, 433, 549, 552
Sau3AI GATC 3 cut(s) 417, 504, 1029
Sau96I GGNCC 5 cut(s) 247, 295, 567, 577, 803
SchI GAGTC 2 cut(s) 178, 523
ScrFI CCNGG 2 cut(s) 357, 798
SduI GDGCHC 2 cut(s) 496, 904
SinI GGWCC 3 cut(s) 247, 577, 803
SmiMI CAYNNNNRTG 2 cut(s) 514, 666
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 4 cut(s) 43, 104, 810, 1036
SsiI CCGC 3 cut(s) 269, 551, 1075
SspMI CTAG 1 cut(s) 89
SstI GAGCTC 2 cut(s) 496, 904
StyD4I CCNGG 2 cut(s) 355, 796
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 7 cut(s) 38, 451, 545, 600, 686, 998, 1062
TaiI ACGT 3 cut(s) 226, 474, 595
TaqI TCGA 5 cut(s) 131, 216, 348, 720, 1028
TasI AATT 4 cut(s) 43, 104, 810, 1036
TauI GCSGC 2 cut(s) 272, 554
TfiI GAWTC 2 cut(s) 238, 1014
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 4 cut(s) 21, 195, 432, 548
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 17, 403, 782
TspGWI ACGGA 2 cut(s) 472, 962
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 3 cut(s) 247, 577, 803
XapI RAATTY 2 cut(s) 43, 104
XbaI TCTAGA 1 cut(s) 88
XceI RCATGY 2 cut(s) 355, 875
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.