pycom13g10200

Belongs to the chalcone stilbene synthases family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
6848679 .. 6849661
983 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10200.2

Sequence Viewer

Length: 942 bp
ATGATCAAGAAGCGTTACATGTACTTGACTGAAGAAATTCTAAAGGAGAACCCAAGTGTGTGCGAGTACATGGCGCCCTCACTTGATGCTCGGCAAGACATGGTGGTTGTTGAAGTCCCAAGGCTTGGCAAAGAGGCTGCCACCAAGGCCATCAATGAATGGGGACAACCTAAGTCCAAAATCACCCACTTGGTCTTTTGCACCACTAGCGGTGTTGACATGCCCGGCGCTGACTACCAGCTCACCAAGCTATTGGGCCTCCGCCCCTCCGTCAAGCGCCTCATGATGTACCAACAAGGTTGTTTCGCTGGAGGCACGGTTCTCCGTTTGGCCAAGGACTTGGCCGAAAACAACAAGGGTGCACGTGTTATTGTTGTTGACACTGCCCTTGACAGTCTTGTGGGTCAAGCCTTGTTTGGTGACGGTGCAGCGGCCGTCATTATTGGTGCCGACCCAATGCCTGAAGTCGAGAAGCCCTTGTTTGAATTGGTCTCGGCGGCACAAACCATTATCCCCGACAGTGATGGGGCTATTGACCTACATCTTCGTGAAGTAGGGCTCACGTTTCACCTTCGGAAGGACGTTCCCGAGCTTATTTCGAAGAACATCGAAAAGAGCCTTAACGAGGCCTTCAAGCCTATAGGCATTTCGGATTGGAACTCGCTCTTCTGGATTGCACACCCAGGTGGCCGTGCTATTCTGGACCAAATAGAGGCCAAGTTGGCATTGAAGCCAGAGAAACTAGAAGCGACAAGGCAAGTGCTGTCAGATTACGGCAACATGACGAGTGGGTGTGTCTTGTTTATTTTGGACGAGGTGAGAAGGAAGTCAGTTGAGAAAGGACTAAAGACAACTGGAGAAGGACTAGAATGGGGTGTACTATTCGGATTTGGGCCTGGCCTCACGGTGGAGACCGTCGTGCTTCACAGCGTGGCTGCTTGA

Protein Analysis

314

Amino Acids

34.16

Weight (kDa)

5.67

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 73, 446
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 4 cut(s) 210, 262, 431, 497
AcoI YGGCCR 4 cut(s) 330, 342, 432, 688
AcsI RAATTY 1 cut(s) 36
AcuI CTGAAG 2 cut(s) 51, 483
AcvI CACGTG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 74
AdeI CACNNNGTG 1 cut(s) 931
AfaI GTAC 4 cut(s) 23, 68, 290, 879
AfiI CCNNNNNNNGG 5 cut(s) 125, 577, 625, 712, 907
AflIII ACRYGT 2 cut(s) 18, 364
AgsI TTSAA 4 cut(s) 113, 485, 634, 730
AjnI CCWGG 2 cut(s) 682, 895
AleI CACNNNNGTG 1 cut(s) 684
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
AluBI AGCT 3 cut(s) 241, 250, 592
AluI AGCT 3 cut(s) 241, 250, 592
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 2 cut(s) 496, 905
Alw44I GTGCAC 1 cut(s) 360
Ama87I CYCGRG 1 cut(s) 587
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 137, 428, 935
ApoI RAATTY 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 36
AspLEI GCGC 3 cut(s) 76, 230, 279
AspS9I GGNCC 3 cut(s) 256, 703, 893
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 5 cut(s) 175, 235, 431, 560, 829
AsuII TTCGAA 1 cut(s) 599
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 1 cut(s) 703
BaeGI GKGCMC 1 cut(s) 364
BalI TGGCCA 1 cut(s) 332
BanI GGYRCC 2 cut(s) 73, 446
BanII GRGCYC 1 cut(s) 561
BbrPI CACGTG 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 3 cut(s) 124, 440, 922
BccI CCATC 2 cut(s) 158, 518
BceAI ACGGC 3 cut(s) 419, 675, 790
BciT130I CCWGG 2 cut(s) 684, 897
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 496, 905
BfaI CTAG 3 cut(s) 207, 743, 866
BfmI CTRYAG 1 cut(s) 639
BfoI RGCGCY 3 cut(s) 77, 231, 280
BglI GCCNNNNNGGC 2 cut(s) 146, 722
BisI GCNGC 5 cut(s) 138, 429, 432, 498, 936
BlsI GCNGC 5 cut(s) 139, 430, 433, 499, 937
Bme1390I CCNGG 3 cut(s) 225, 684, 897
Bme18I GGWCC 1 cut(s) 703
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 3 cut(s) 256, 703, 893
BmiI GGNNCC 2 cut(s) 75, 448
BmrFI CCNGG 3 cut(s) 225, 684, 897
BmsI GCATC 1 cut(s) 76
BpmI CTGGAG 2 cut(s) 330, 876
Bpu14I TTCGAA 1 cut(s) 599
BpuMI CCSGG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 2 cut(s) 496, 905
BsaJI CCNNGG 4 cut(s) 119, 144, 333, 682
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 577, 625, 712, 907
Bse1I ACTGG 1 cut(s) 859
BseBI CCWGG 2 cut(s) 684, 897
BseDI CCNNGG 4 cut(s) 119, 144, 333, 682
BseLI CCNNNNNNNGG 5 cut(s) 125, 577, 625, 712, 907
BseNI ACTGG 1 cut(s) 859
BseSI GKGCMC 1 cut(s) 364
BseX3I CGGCCG 1 cut(s) 432
BseXI GCAGC 3 cut(s) 124, 440, 922
BsgI GTGCAG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 435
BshNI GGYRCC 2 cut(s) 73, 446
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 2 cut(s) 101, 177
BslI CCNNNNNNNGG 5 cut(s) 125, 577, 625, 712, 907
BsmAI GTCTC 2 cut(s) 496, 905
BsmFI GGGAC 2 cut(s) 101, 177
Bso31I GGTCTC 2 cut(s) 496, 905
BsoBI CYCGRG 1 cut(s) 587
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 364, 561
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 4 cut(s) 210, 262, 431, 497
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 75, 448
BspQI GCTCTTC 1 cut(s) 671
BspT104I TTCGAA 1 cut(s) 599
BspT107I GGYRCC 2 cut(s) 73, 446
BspTNI GGTCTC 2 cut(s) 496, 905
BsrI ACTGG 1 cut(s) 859
BssECI CCNNGG 4 cut(s) 119, 144, 333, 682
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 3 cut(s) 119, 144, 333
Bst2UI CCWGG 2 cut(s) 684, 897
Bst4CI ACNGT 6 cut(s) 319, 395, 425, 521, 907, 916
Bst6I CTCTTC 1 cut(s) 671
BstACI GRCGYC 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 599
BstDEI CTNAG 1 cut(s) 171
BstENI CCTNNNNNAGG 2 cut(s) 575, 623
BstH2I RGCGCY 3 cut(s) 77, 231, 280
BstHHI GCGC 3 cut(s) 76, 230, 279
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 496, 905
BstMBI GATC 1 cut(s) 3
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 4 cut(s) 146, 207, 247, 722
BstNI CCWGG 2 cut(s) 684, 897
BstNSI RCATGY 2 cut(s) 22, 223
BstSCI CCNGG 3 cut(s) 223, 682, 895
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 3 cut(s) 124, 440, 922
BstXI CCANNNNNNTGG 2 cut(s) 253, 340
BstZI CGGCCG 1 cut(s) 432
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 381, 526
CciI TCATGA 1 cut(s) 282
CfoI GCGC 3 cut(s) 76, 230, 279
Cfr13I GGNCC 3 cut(s) 256, 703, 893
Csp6I GTAC 4 cut(s) 22, 67, 289, 878
CviAII CATG 6 cut(s) 19, 70, 100, 220, 283, 781
CviQI GTAC 4 cut(s) 22, 67, 289, 878
DdeI CTNAG 1 cut(s) 171
DinI GGCGCC 1 cut(s) 75
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraIII CACNNNGTG 1 cut(s) 931
EaeI YGGCCR 4 cut(s) 330, 342, 432, 688
EagI CGGCCG 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 671
EarI CTCTTC 1 cut(s) 671
EciI GGCGGA 1 cut(s) 251
EclXI CGGCCG 1 cut(s) 432
Eco130I CCWWGG 3 cut(s) 119, 144, 333
Eco147I AGGCCT 1 cut(s) 629
Eco24I GRGCYC 1 cut(s) 561
Eco31I GGTCTC 2 cut(s) 496, 905
Eco47I GGWCC 1 cut(s) 703
Eco52I CGGCCG 1 cut(s) 432
Eco57I CTGAAG 2 cut(s) 51, 483
Eco72I CACGTG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 587
EcoNI CCTNNNNNAGG 2 cut(s) 575, 623
EcoRII CCWGG 2 cut(s) 682, 895
EcoT14I CCWWGG 3 cut(s) 119, 144, 333
EcoT38I GRGCYC 1 cut(s) 561
EgeI GGCGCC 1 cut(s) 75
EheI GGCGCC 1 cut(s) 75
ErhI CCWWGG 3 cut(s) 119, 144, 333
FaeI CATG 6 cut(s) 22, 73, 103, 223, 286, 784
FaiI YATR 7 cut(s) 20, 71, 101, 221, 284, 641, 782
FaqI GGGAC 2 cut(s) 101, 177
FatI CATG 6 cut(s) 18, 69, 99, 219, 282, 780
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 138, 429, 432, 498, 936
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 5 cut(s) 138, 429, 432, 498, 936
FspBI CTAG 3 cut(s) 207, 743, 866
GlaI GCGC 3 cut(s) 75, 229, 278
GluI GCNGC 5 cut(s) 138, 429, 432, 498, 936
GsuI CTGGAG 2 cut(s) 330, 876
HaeII RGCGCY 3 cut(s) 77, 231, 280
HapII CCGG 1 cut(s) 225
HhaI GCGC 3 cut(s) 76, 230, 279
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 6 cut(s) 22, 73, 103, 223, 286, 784
Hin6I GCGC 3 cut(s) 74, 228, 277
HinP1I GCGC 3 cut(s) 74, 228, 277
HincII GTYRAC 2 cut(s) 217, 379
HindII GTYRAC 2 cut(s) 217, 379
HpaII CCGG 1 cut(s) 225
HphI GGTGA 5 cut(s) 175, 235, 431, 560, 829
Hpy166II GTNNAC 4 cut(s) 217, 362, 379, 878
Hpy188I TCNGA 4 cut(s) 576, 652, 769, 887
Hpy188III TCNNGA 7 cut(s) 7, 283, 469, 548, 587, 670, 701
Hpy8I GTNNAC 4 cut(s) 217, 362, 379, 878
Hpy99I CGWCG 1 cut(s) 920
HpyAV CCTTC 5 cut(s) 571, 581, 640, 816, 854
HpyCH4III ACNGT 6 cut(s) 319, 395, 425, 521, 907, 916
HpyCH4IV ACGT 3 cut(s) 364, 563, 582
HpyCH4V TGCA 4 cut(s) 201, 362, 428, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 207, 247, 722
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 3 cut(s) 364, 563, 582
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 6 cut(s) 22, 73, 103, 223, 286, 784
HspAI GCGC 3 cut(s) 74, 228, 277
KasI GGCGCC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 671
Lsp1109I GCAGC 3 cut(s) 124, 440, 922
LweI GCATC 1 cut(s) 76
MaeI CTAG 3 cut(s) 207, 743, 866
MaeII ACGT 3 cut(s) 364, 563, 582
MaeIII GTNAC 2 cut(s) 14, 419
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 44, 536, 613, 658
MhlI GDGCHC 2 cut(s) 364, 561
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 2 cut(s) 36, 485
MluNI TGGCCA 1 cut(s) 332
Mly113I GGCGCC 1 cut(s) 74
Mox20I TGGCCA 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 1 cut(s) 332
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 2 cut(s) 546, 684
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 3 cut(s) 225, 684, 897
MvaI CCWGG 2 cut(s) 684, 897
MwoI GCNNNNNNNGC 4 cut(s) 146, 207, 247, 722
NarI GGCGCC 1 cut(s) 74
NciI CCSGG 1 cut(s) 225
NdeII GATC 1 cut(s) 3
NlaIII CATG 6 cut(s) 22, 73, 103, 223, 286, 784
NlaIV GGNNCC 2 cut(s) 75, 448
NmeAIII GCCGAG 2 cut(s) 70, 473
NmuCI GTSAC 1 cut(s) 419
NspI RCATGY 2 cut(s) 22, 223
NspV TTCGAA 1 cut(s) 599
OliI CACNNNNGTG 1 cut(s) 684
PagI TCATGA 1 cut(s) 282
PceI AGGCCT 1 cut(s) 629
PciI ACATGT 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 36
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 5 cut(s) 139, 430, 433, 499, 937
PluTI GGCGCC 1 cut(s) 77
PmaCI CACGTG 1 cut(s) 365
PmlI CACGTG 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 365
PscI ACATGT 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 682, 895
PspCI CACGTG 1 cut(s) 365
PspGI CCWGG 2 cut(s) 682, 895
PspN4I GGNNCC 2 cut(s) 75, 448
PspPI GGNCC 3 cut(s) 256, 703, 893
RsaI GTAC 4 cut(s) 23, 68, 290, 879
RsaNI GTAC 4 cut(s) 22, 67, 289, 878
RseI CAYNNNNRTG 2 cut(s) 546, 684
SapI GCTCTTC 1 cut(s) 671
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 5 cut(s) 138, 429, 432, 498, 936
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 3 cut(s) 256, 703, 893
ScrFI CCNGG 3 cut(s) 225, 684, 897
SduI GDGCHC 2 cut(s) 364, 561
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 639
SfoI GGCGCC 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 599
SinI GGWCC 1 cut(s) 703
SmiMI CAYNNNNRTG 2 cut(s) 546, 684
Sse9I AATT 2 cut(s) 36, 485
SseBI AGGCCT 1 cut(s) 629
SsiI CCGC 4 cut(s) 210, 262, 431, 497
SspDI GGCGCC 1 cut(s) 73
SspMI CTAG 3 cut(s) 207, 743, 866
StuI AGGCCT 1 cut(s) 629
StyD4I CCNGG 3 cut(s) 223, 682, 895
StyI CCWWGG 3 cut(s) 119, 144, 333
TaaI ACNGT 6 cut(s) 319, 395, 425, 521, 907, 916
TaiI ACGT 3 cut(s) 367, 566, 585
TaqI TCGA 3 cut(s) 468, 599, 609
TasI AATT 2 cut(s) 36, 485
TatI WGTACW 3 cut(s) 21, 66, 877
TauI GCSGC 2 cut(s) 434, 500
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 2 cut(s) 388, 526
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 3 cut(s) 137, 428, 935
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 2 cut(s) 259, 314
TspRI CASTG 2 cut(s) 388, 526
Van91I CCANNNNNTGG 1 cut(s) 125
VneI GTGCAC 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 703
XagI CCTNNNNNAGG 2 cut(s) 575, 623
XapI RAATTY 1 cut(s) 36
XceI RCATGY 2 cut(s) 22, 223
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 3 cut(s) 207, 743, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.