RchiOBHm_Chr1g0316441

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000409
Physical Location & Seq
Reverse (-)
3837256 .. 3838443
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54686

Sequence Viewer

Length: 696 bp
ATGGTGACCGTCGAGGAAGTCCGCAAGGCTCAACGTGCTGAGGGTCCGGCCACCGTCTTGGCCATCGGGACAGCCACTCCACCGAACTGTATTGACCAGAGCACATACCCCGACTACTACTTTCGTATCACCAACAGCGAGCACAAGGCTGAGCTCAAAGAGAAATTCCAGCGCATGTGTGACAAATCTATGATCAAGAAGCGTTATATGTATTTGACTGAAGAAATTCTCAAAGAGAATCCCAGCATGTGCGAGTACATGGCCCCTTCACTTGATGCAAGACAAGACATGGTGGTGGTTGAAATTCCAAAGCTTGGGAAAGAGGCAGCTACCAAGGCCATTAAGGAATGGGGTCAGCCCAAGTCCAAAATCACCCACTTGGTCTTTTGTACTACGAGTGGCGTCGACATGCCCGGGGCTGATTACCAGCTCACTAAGCTCTTGGGCCTCCGCCCGTCCGTCAAGCGTCTCATGATGTACCAGCAAGGGTGTTTTGCCGGAGGCACGGTGCTTCGGTTGGCTAAGGACTTGGCCGAGAACAACAAAGGTGCACGTGTTCTTGTTGTTTGCTCAGAGATTACTGCCGTGACTTTCCGTGGGCCTAGCGACACTCATCTTGATAGTCTTGTGGGCCAAGCCTTGTTCGGTGATGGTGCTGCGGCGATTATTGTTGGGTCTGACCCATTGCCCGAGTGA

Protein Analysis

231

Amino Acids

25.45

Weight (kDa)

7.56

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 5 - 228 1.6e-125 Chalcone and stilbene synthases, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 314
AccI GTMKAC 1 cut(s) 405
AciI CCGC 3 cut(s) 22, 451, 659
AcoI YGGCCR 3 cut(s) 48, 60, 531
AcsI RAATTY 3 cut(s) 164, 225, 303
AcuI CTGAAG 1 cut(s) 240
AcvI CACGTG 1 cut(s) 554
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 3 cut(s) 257, 391, 479
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 1 cut(s) 302
AluBI AGCT 5 cut(s) 154, 313, 329, 430, 439
AluI AGCT 5 cut(s) 154, 313, 329, 430, 439
Alw21I GWGCWC 4 cut(s) 104, 144, 156, 553
Alw26I GTCTC 1 cut(s) 473
Alw44I GTGCAC 1 cut(s) 549
Ama87I CYCGRG 2 cut(s) 413, 689
AoxI GGCC 8 cut(s) 48, 60, 261, 336, 445, 531, 599, 631
ApaLI GTGCAC 1 cut(s) 549
ApeKI GCWGC 2 cut(s) 326, 656
ApoI RAATTY 3 cut(s) 164, 225, 303
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 5 cut(s) 44, 262, 445, 599, 631
AsuC2I CCSGG 2 cut(s) 414, 415
AsuHPI GGTGA 4 cut(s) 16, 121, 364, 659
AvaI CYCGRG 2 cut(s) 413, 689
AvaII GGWCC 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 553
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 156
BbrPI CACGTG 1 cut(s) 554
Bbv12I GWGCWC 4 cut(s) 104, 144, 156, 553
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 338, 643
BccI CCATC 2 cut(s) 71, 644
BceAI ACGGC 1 cut(s) 569
BclI TGATCA 1 cut(s) 192
BcnI CCSGG 2 cut(s) 414, 415
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 603
BisI GCNGC 3 cut(s) 327, 657, 660
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 3 cut(s) 328, 658, 661
Bme1390I CCNGG 2 cut(s) 414, 415
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 2 cut(s) 413, 689
BmgT120I GGNCC 5 cut(s) 44, 262, 445, 599, 631
BmiI GGNNCC 2 cut(s) 45, 264
BmrFI CCNGG 2 cut(s) 414, 415
BmsI GCATC 1 cut(s) 265
Bpu10I CCTNAGC 2 cut(s) 39, 522
Bpu1102I GCTNAGC 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 414, 415
BsaAI YACGTR 1 cut(s) 554
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 4 cut(s) 333, 413, 414, 595
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 492, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 683
BseDI CCNNGG 4 cut(s) 333, 413, 414, 595
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 683
BseMII CTCAG 3 cut(s) 30, 141, 585
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 2 cut(s) 338, 643
BseYI CCCAGC 1 cut(s) 242
BshFI GGCC 8 cut(s) 50, 62, 263, 338, 447, 533, 601, 633
BsiHKAI GWGCWC 4 cut(s) 104, 144, 156, 553
BsiHKCI CYCGRG 2 cut(s) 413, 689
BsiSI CCGG 3 cut(s) 47, 414, 498
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 473
BsmBI CGTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 8 cut(s) 50, 62, 263, 338, 447, 533, 601, 633
BsoBI CYCGRG 2 cut(s) 413, 689
Bsp1286I GDGCHC 4 cut(s) 104, 144, 156, 553
Bsp143I GATC 1 cut(s) 192
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 3 cut(s) 22, 451, 659
BspANI GGCC 8 cut(s) 50, 62, 263, 338, 447, 533, 601, 633
BspCNI CTCAG 3 cut(s) 31, 142, 584
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 45, 264
BsrDI GCAATG 1 cut(s) 683
BssECI CCNNGG 4 cut(s) 333, 413, 414, 595
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 4 cut(s) 10, 55, 89, 508
BstACI GRCGYC 1 cut(s) 402
BstBAI YACGTR 1 cut(s) 554
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 5 cut(s) 39, 150, 435, 522, 571
BstDSI CCRYGG 1 cut(s) 595
BstEII GGTNACC 1 cut(s) 4
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 3 cut(s) 35, 335, 436
BstNSI RCATGY 3 cut(s) 178, 250, 412
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 412, 413
BstSLI GKGCMC 1 cut(s) 553
BstV1I GCAGC 2 cut(s) 338, 643
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 8 cut(s) 50, 62, 263, 338, 447, 533, 601, 633
BtgI CCRYGG 1 cut(s) 595
Cac8I GCNNGC 1 cut(s) 140
CciI TCATGA 1 cut(s) 471
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 5 cut(s) 44, 262, 445, 599, 631
Cfr9I CCCGGG 1 cut(s) 413
CseI GACGC 2 cut(s) 391, 455
Csp6I GTAC 3 cut(s) 256, 390, 478
CviAII CATG 6 cut(s) 175, 247, 259, 289, 409, 472
CviQI GTAC 3 cut(s) 256, 390, 478
DdeI CTNAG 5 cut(s) 39, 150, 435, 522, 571
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EaeI YGGCCR 3 cut(s) 48, 60, 531
EciI GGCGGA 1 cut(s) 440
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 240
Eco72I CACGTG 1 cut(s) 554
Eco88I CYCGRG 2 cut(s) 413, 689
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 6 cut(s) 178, 250, 262, 292, 412, 475
FaqI GGGAC 1 cut(s) 82
FatI CATG 6 cut(s) 174, 246, 258, 288, 408, 471
FbaI TGATCA 1 cut(s) 192
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 327, 657, 660
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 3 cut(s) 327, 657, 660
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 173
GluI GCNGC 3 cut(s) 327, 657, 660
GsaI CCCAGC 1 cut(s) 246
HaeIII GGCC 8 cut(s) 50, 62, 263, 338, 447, 533, 601, 633
HapII CCGG 3 cut(s) 47, 414, 498
HgaI GACGC 2 cut(s) 391, 455
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 6 cut(s) 178, 250, 262, 292, 412, 475
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 238
HpaII CCGG 3 cut(s) 47, 414, 498
HphI GGTGA 4 cut(s) 16, 121, 364, 659
Hpy166II GTNNAC 2 cut(s) 406, 551
Hpy188I TCNGA 2 cut(s) 574, 679
Hpy188III TCNNGA 4 cut(s) 67, 196, 472, 617
Hpy8I GTNNAC 2 cut(s) 406, 551
Hpy99I CGWCG 2 cut(s) 14, 407
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 4 cut(s) 10, 55, 89, 508
HpyCH4IV ACGT 2 cut(s) 34, 553
HpyCH4V TGCA 2 cut(s) 278, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 335, 436
HpyF3I CTNAG 5 cut(s) 39, 150, 435, 522, 571
HpySE526I ACGT 2 cut(s) 34, 553
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 6 cut(s) 178, 250, 262, 292, 412, 475
HspAI GCGC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 8 cut(s) 60, 110, 182, 256, 427, 440, 494, 511
Lsp1109I GCAGC 2 cut(s) 338, 643
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 603
MaeII ACGT 2 cut(s) 34, 553
MaeIII GTNAC 3 cut(s) 4, 179, 586
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 233
MhlI GDGCHC 4 cut(s) 104, 144, 156, 553
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 3 cut(s) 164, 225, 303
MluNI TGGCCA 1 cut(s) 62
MnlI CCTC 5 cut(s) 7, 34, 316, 458, 494
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 3 cut(s) 47, 414, 498
MspR9I CCNGG 2 cut(s) 414, 415
MwoI GCNNNNNNNGC 3 cut(s) 35, 335, 436
NciI CCSGG 2 cut(s) 414, 415
NdeII GATC 1 cut(s) 192
NlaIII CATG 6 cut(s) 178, 250, 262, 292, 412, 475
NlaIV GGNNCC 2 cut(s) 45, 264
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 3 cut(s) 4, 179, 586
NspI RCATGY 3 cut(s) 178, 250, 412
PagI TCATGA 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 3 cut(s) 328, 658, 661
PmaCI CACGTG 1 cut(s) 554
PmlI CACGTG 1 cut(s) 554
Ppu21I YACGTR 1 cut(s) 554
Psp124BI GAGCTC 1 cut(s) 156
PspCI CACGTG 1 cut(s) 554
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 45, 264
PspPI GGNCC 5 cut(s) 44, 262, 445, 599, 631
RsaI GTAC 3 cut(s) 257, 391, 479
RsaNI GTAC 3 cut(s) 256, 390, 478
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 327, 657, 660
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 5 cut(s) 44, 262, 445, 599, 631
ScrFI CCNGG 2 cut(s) 414, 415
SduI GDGCHC 4 cut(s) 104, 144, 156, 553
SetI ASST 8 cut(s) 37, 156, 315, 331, 432, 441, 550, 556
SfaNI GCATC 1 cut(s) 265
SinI GGWCC 1 cut(s) 44
SmaI CCCGGG 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 3 cut(s) 164, 225, 303
SsiI CCGC 3 cut(s) 22, 451, 659
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 412, 413
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 4 cut(s) 10, 55, 89, 508
TaiI ACGT 2 cut(s) 37, 556
TaqI TCGA 2 cut(s) 12, 405
TasI AATT 3 cut(s) 164, 225, 303
TatI WGTACW 2 cut(s) 255, 389
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseFI GTSAC 3 cut(s) 4, 179, 586
TseI GCWGC 2 cut(s) 326, 656
Tsp45I GTSAC 3 cut(s) 4, 179, 586
TspGWI ACGGA 2 cut(s) 448, 584
TspMI CCCGGG 1 cut(s) 413
Van91I CCANNNNNTGG 1 cut(s) 314
VneI GTGCAC 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 164, 225, 303
XceI RCATGY 3 cut(s) 178, 250, 412
XmaI CCCGGG 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.