Prupe.4G252800_v2.0.a1

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000409
Physical Location & Seq
Forward (+)
17070079 .. 17073025
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G252800.1

Sequence Viewer

Length: 642 bp
ATGACAAGGATTAATTACCTTATCCAAGTTGCTGACTTGGCACCATCTGGTTGGGAAATCTCACTAGGGTGCCTTTTTGTTTATAGTTTTGAACCCATCCAATCCAACCAACCCTGTATACGGCCAGCGATGTCTGCGAGTAAGATTGAAGCCAAGAGTCCGGCGGCAATACTAGCCATTGGTCCGACAAACCCAGCCAACTGTCATTACCAACAAGATTATCCTGATTTCCTATTCCGAGTCACCAATAACGACCACATGACAGAATTGAAAGACAAGTTCAAGCGCATATGTGAAAAATCAAACGTAAAGAAGCGTTATCTACACATCACGGAAGAGATCCTAAAGGCAAACCCAAACATATGTCGCTACAAGGCACCCTCACTGGATCCATGTCAGGACATGATGATTCCAGAGGTACCCAAGCTTGGCAAGGAAGCGGCATTGAAGGCCATCGAAGAGTGGGGCCAACCCATTTCAAACATCACACATCTCATCTTCTGCACGTCTTCCTGCGTCGACATGCCTGGCGCCGACTTGCAACTCGTCAAGCTCCTCGGCCTTGACCCCTTTGTCAACAGATTCATGATCTACCTACAAGGCTGCTTCGCTGGTGGGACTGCCCTATTGAAATATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

214

Amino Acids

23.93

Weight (kDa)

8.03

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 572
Acc65I GGTACC 1 cut(s) 418
AccB1I GGYRCC 5 cut(s) 40, 69, 376, 418, 530
AccI GTMKAC 2 cut(s) 118, 519
AciI CCGC 2 cut(s) 164, 440
AclWI GGATC 3 cut(s) 334, 383, 396
AcoI YGGCCR 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 531
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 120, 428
AgsI TTSAA 7 cut(s) 92, 149, 271, 283, 448, 480, 631
AjiI CACGTC 1 cut(s) 507
AjnI CCWGG 1 cut(s) 526
AleI CACNNNNGTG 1 cut(s) 67
AluBI AGCT 2 cut(s) 427, 553
AluI AGCT 2 cut(s) 427, 553
AlwI GGATC 3 cut(s) 334, 383, 396
AoxI GGCC 4 cut(s) 122, 450, 466, 559
ApeKI GCWGC 1 cut(s) 603
AseI ATTAAT 1 cut(s) 12
Asp718I GGTACC 1 cut(s) 418
AspLEI GCGC 2 cut(s) 288, 533
AspS9I GGNCC 2 cut(s) 182, 466
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 182
BamHI GGATCC 1 cut(s) 388
BanI GGYRCC 5 cut(s) 40, 69, 376, 418, 530
BbsI GAAGAC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 590
BccI CCATC 3 cut(s) 52, 104, 461
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 528
BfaI CTAG 2 cut(s) 65, 173
BfoI RGCGCY 1 cut(s) 534
BisI GCNGC 3 cut(s) 165, 441, 604
BlsI GCNGC 3 cut(s) 166, 442, 605
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 1 cut(s) 182
BmgBI CACGTC 1 cut(s) 507
BmgT120I GGNCC 2 cut(s) 182, 466
BmiI GGNNCC 7 cut(s) 42, 71, 378, 390, 420, 467, 532
BmrFI CCNGG 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 556
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 428
Bse1I ACTGG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 556
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 120, 428
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 1 cut(s) 590
BseYI CCCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 487
BshFI GGCC 4 cut(s) 124, 452, 468, 561
BshNI GGYRCC 5 cut(s) 40, 69, 376, 418, 530
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 2 cut(s) 120, 428
BsmFI GGGAC 1 cut(s) 631
BsnI GGCC 4 cut(s) 124, 452, 468, 561
Bsp143I GATC 3 cut(s) 339, 388, 588
BspACI CCGC 2 cut(s) 164, 440
BspANI GGCC 4 cut(s) 124, 452, 468, 561
BspHI TCATGA 1 cut(s) 585
BspLI GGNNCC 7 cut(s) 42, 71, 378, 390, 420, 467, 532
BspPI GGATC 3 cut(s) 334, 383, 396
BspT107I GGYRCC 5 cut(s) 40, 69, 376, 418, 530
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 556
BssMI GATC 3 cut(s) 339, 388, 588
BssNAI GTATAC 1 cut(s) 119
BssNI GRCGYC 1 cut(s) 531
Bst1107I GTATAC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 2 cut(s) 330, 453
BstACI GRCGYC 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 2 cut(s) 288, 533
BstKTI GATC 3 cut(s) 342, 391, 591
BstMBI GATC 3 cut(s) 339, 388, 588
BstMWI GCNNNNNNNGC 4 cut(s) 38, 134, 173, 449
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 590
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 2 cut(s) 339, 388
BstXI CCANNNNNNTGG 1 cut(s) 51
BstYI RGATCY 2 cut(s) 339, 388
BstZ17I GTATAC 1 cut(s) 119
BsuRI GGCC 4 cut(s) 124, 452, 468, 561
BtgZI GCGATG 1 cut(s) 143
BtrI CACGTC 1 cut(s) 507
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 585
CfoI GCGC 2 cut(s) 288, 533
Cfr13I GGNCC 2 cut(s) 182, 466
CseI GACGC 1 cut(s) 505
Csp6I GTAC 1 cut(s) 419
CviAII CATG 5 cut(s) 259, 393, 403, 523, 586
CviQI GTAC 1 cut(s) 419
DinI GGCGCC 1 cut(s) 532
DpnI GATC 3 cut(s) 341, 390, 590
DpnII GATC 3 cut(s) 339, 388, 588
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 330, 453
EarI CTCTTC 2 cut(s) 330, 453
Eco47I GGWCC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 526
EgeI GGCGCC 1 cut(s) 532
EheI GGCGCC 1 cut(s) 532
FaeI CATG 5 cut(s) 262, 396, 406, 526, 589
FaqI GGGAC 1 cut(s) 631
FatI CATG 5 cut(s) 258, 392, 402, 522, 585
FauNDI CATATG 2 cut(s) 290, 362
FblI GTMKAC 2 cut(s) 118, 519
Fnu4HI GCNGC 3 cut(s) 165, 441, 604
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 165, 441, 604
FspBI CTAG 2 cut(s) 65, 173
GlaI GCGC 2 cut(s) 287, 532
GluI GCNGC 3 cut(s) 165, 441, 604
GsaI CCCAGC 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 4 cut(s) 124, 452, 468, 561
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 505
HhaI GCGC 2 cut(s) 288, 533
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 5 cut(s) 262, 396, 406, 526, 589
Hin6I GCGC 2 cut(s) 286, 531
HinP1I GCGC 2 cut(s) 286, 531
HincII GTYRAC 2 cut(s) 520, 577
HindII GTYRAC 2 cut(s) 520, 577
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 4 cut(s) 157, 240, 409, 582
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 3 cut(s) 119, 520, 577
Hpy188I TCNGA 2 cut(s) 186, 239
Hpy188III TCNNGA 4 cut(s) 224, 398, 413, 586
Hpy8I GTNNAC 3 cut(s) 119, 520, 577
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 2 cut(s) 306, 506
HpyCH4V TGCA 2 cut(s) 504, 541
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 134, 173, 449
HpySE526I ACGT 2 cut(s) 306, 506
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 5 cut(s) 262, 396, 406, 526, 589
HspAI GCGC 2 cut(s) 286, 531
KasI GGCGCC 1 cut(s) 530
KpnI GGTACC 1 cut(s) 422
Kzo9I GATC 3 cut(s) 339, 388, 588
LmnI GCTCC 1 cut(s) 558
Lsp1109I GCAGC 1 cut(s) 590
MaeI CTAG 2 cut(s) 65, 173
MaeII ACGT 2 cut(s) 306, 506
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 341, 390, 590
MboI GATC 3 cut(s) 339, 388, 588
MboII GAAGA 4 cut(s) 347, 470, 490, 501
MflI RGATCY 2 cut(s) 339, 388
MluCI AATT 2 cut(s) 13, 266
Mly113I GGCGCC 1 cut(s) 531
MlyI GAGTC 2 cut(s) 166, 249
MmeI TCCRAC 2 cut(s) 129, 209
MnlI CCTC 3 cut(s) 391, 409, 566
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 67
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 4 cut(s) 38, 134, 173, 449
NarI GGCGCC 1 cut(s) 531
NdeI CATATG 2 cut(s) 290, 362
NdeII GATC 3 cut(s) 339, 388, 588
NlaIII CATG 5 cut(s) 262, 396, 406, 526, 589
NlaIV GGNNCC 7 cut(s) 42, 71, 378, 390, 420, 467, 532
NmeAIII GCCGAG 1 cut(s) 537
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 526
OliI CACNNNNGTG 1 cut(s) 67
PagI TCATGA 1 cut(s) 585
PfeI GAWTC 2 cut(s) 409, 582
PkrI GCNGC 3 cut(s) 166, 442, 605
PleI GAGTC 2 cut(s) 165, 248
PluTI GGCGCC 1 cut(s) 534
PpsI GAGTC 2 cut(s) 165, 248
PshBI ATTAAT 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 7 cut(s) 42, 71, 378, 390, 420, 467, 532
PspPI GGNCC 2 cut(s) 182, 466
PsuI RGATCY 2 cut(s) 339, 388
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 67
SalI GTCGAC 1 cut(s) 518
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 3 cut(s) 165, 441, 604
Sau3AI GATC 3 cut(s) 339, 388, 588
Sau96I GGNCC 2 cut(s) 182, 466
SchI GAGTC 2 cut(s) 166, 249
ScrFI CCNGG 1 cut(s) 528
SetI ASST 7 cut(s) 21, 309, 420, 429, 509, 555, 597
SfoI GGCGCC 1 cut(s) 532
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 67
Sse9I AATT 2 cut(s) 13, 266
SsiI CCGC 2 cut(s) 164, 440
SspDI GGCGCC 1 cut(s) 530
SspMI CTAG 2 cut(s) 65, 173
StyD4I CCNGG 1 cut(s) 526
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 2 cut(s) 309, 509
TaqI TCGA 2 cut(s) 456, 519
TasI AATT 2 cut(s) 13, 266
TauI GCSGC 2 cut(s) 167, 443
TfiI GAWTC 2 cut(s) 409, 582
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 603
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 574
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 12
XceI RCATGY 1 cut(s) 526
XmiI GTMKAC 2 cut(s) 118, 519
XspI CTAG 2 cut(s) 65, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.