MD14G1160900.v1.1

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000409
Physical Location & Seq
Forward (+)
25536508 .. 25537812
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1160900.v1.1.491

Sequence Viewer

Length: 930 bp
ATGTGTGCATTAAAATATATCCTAACCTTGAAGATTCCACAAGTTAGTAGGATCTGTGATTGCTATATAAGGAATGGGGTAGTGCCATTCATTTTATCGCAACCTTTCAACTCCCCCTCTCTTTCAAGTTTCAACAAATCCCTACTATATATCTGCTCTTTAACTTGCTTAATGGCGCCTTTTGTTAACATTCATGTAGAGCCTCCACATGCCAAAATCCTGGCCATTGGCACTGCAAATCCACCCAACATCTACTACCAAAAAGACTATCCTGATTTCTTGTTTCGAGTCACCAAAAATGAGCACAAAACATATTTAAGAGAGAAGTTCGATCGCATTTGTAAGTATAATTTTTACAAGCACTACTCGTGCACATTTATACTGCACATGCACGAGATTACCTTATATTTATATGTAGGAAGGAAACATATCATGCATCAAATTTCAAAAACAAGGATGCGTTACTTGTATCTAACAGAAGAGATTCTAAATGCTAACCCGAGCATATATACCTATGGAGCCCCATCACTTGATGTGCGCCAAGACATGTTGAACCCCAAGGTCCCAAAGCTAGGGCAACAAGCAACATTGAAAGCCATCAAAGAGTGGGGCCAGCCCATCTCAAAGATCACCCACCTCATCTTTTGCACAACTTCTTACGTTGACATGCCAGCTGGTTGCTATGCTGGTGCGACCGTCCTCCCCCTGGCCAAGGACTTCGCAGAGAACAACAATGGTGCACGCATCCTTGTGGTGTGCGGCGAGATCACGACCGTGTTTTTCCACGGACTCATTGACACCCACCTTGACATACTGGTGGGCCAGGCTCTTTTTGCTGATGGAGCATCTGCTGTGATAGTTGGGGCTAATCCAGAGCCTGAAATTGAGAGGCCGTTGTTTGAAATCAGAAGAAATAATGCCTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

310

Amino Acids

35.18

Weight (kDa)

8.8

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 70 - 120 5.9e-12 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_N PF00195 147 - 225 2.5e-28 Chalcone and stilbene synthases, N-terminal domain
ACP_syn_III PF08545 222 - 293 2.2e-06 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Chal_sti_synt_N PF00195 226 - 291 2.7e-26 Chalcone and stilbene synthases, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AciI CCGC 1 cut(s) 759
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 2 cut(s) 222, 708
AcsI RAATTY 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 572, 706, 712
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 9 cut(s) 31, 109, 126, 133, 447, 553, 592, 902, 926
AjnI CCWGG 3 cut(s) 219, 705, 822
AleI CACNNNNGTG 1 cut(s) 773
AluBI AGCT 2 cut(s) 571, 674
AluI AGCT 2 cut(s) 571, 674
Alw21I GWGCWC 3 cut(s) 306, 374, 742
Alw44I GTGCAC 2 cut(s) 370, 738
AlwI GGATC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 878
Ama87I CYCGRG 1 cut(s) 499
AoxI GGCC 5 cut(s) 222, 610, 708, 820, 890
ApaLI GTGCAC 2 cut(s) 370, 738
ApoI RAATTY 1 cut(s) 441
Asp700I GAANNNNTTC 1 cut(s) 483
AspLEI GCGC 2 cut(s) 178, 540
AspS9I GGNCC 3 cut(s) 562, 610, 820
AsuHPI GGTGA 2 cut(s) 283, 622
AvaI CYCGRG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 562
BaeGI GKGCMC 2 cut(s) 374, 742
BalI TGGCCA 2 cut(s) 224, 710
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 523
BauI CACGAG 2 cut(s) 367, 392
Bbv12I GWGCWC 3 cut(s) 306, 374, 742
BccI CCATC 4 cut(s) 532, 605, 626, 833
BceAI ACGGC 1 cut(s) 877
BciT130I CCWGG 3 cut(s) 221, 707, 824
BfaI CTAG 1 cut(s) 572
BfoI RGCGCY 1 cut(s) 179
BisI GCNGC 1 cut(s) 760
BlsI GCNGC 1 cut(s) 761
Bme1390I CCNGG 3 cut(s) 221, 707, 824
Bme18I GGWCC 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 499
BmgT120I GGNCC 3 cut(s) 562, 610, 820
BmiI GGNNCC 4 cut(s) 177, 520, 564, 611
BmrFI CCNGG 3 cut(s) 221, 707, 824
BmsI GCATC 4 cut(s) 445, 447, 753, 854
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 558, 705, 711, 784
Bsc4I CCNNNNNNNGG 3 cut(s) 572, 706, 712
Bse1I ACTGG 1 cut(s) 819
BseBI CCWGG 3 cut(s) 221, 707, 824
BseDI CCNNGG 4 cut(s) 558, 705, 711, 784
BseGI GGATG 2 cut(s) 462, 744
BseLI CCNNNNNNNGG 3 cut(s) 572, 706, 712
BseNI ACTGG 1 cut(s) 819
BseSI GKGCMC 2 cut(s) 374, 742
BsgI GTGCAG 1 cut(s) 368
Bsh1285I CGRYCG 3 cut(s) 334, 696, 774
BshFI GGCC 5 cut(s) 224, 612, 710, 822, 892
BshNI GGYRCC 1 cut(s) 175
BsiEI CGRYCG 3 cut(s) 334, 696, 774
BsiHKAI GWGCWC 3 cut(s) 306, 374, 742
BsiHKCI CYCGRG 1 cut(s) 499
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 3 cut(s) 572, 706, 712
BsmFI GGGAC 1 cut(s) 548
BsnI GGCC 5 cut(s) 224, 612, 710, 822, 892
BsoBI CYCGRG 1 cut(s) 499
Bsp1286I GDGCHC 4 cut(s) 306, 374, 523, 742
Bsp143I GATC 4 cut(s) 51, 331, 627, 765
BspACI CCGC 1 cut(s) 759
BspANI GGCC 5 cut(s) 224, 612, 710, 822, 892
BspLI GGNNCC 4 cut(s) 177, 520, 564, 611
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 175
BsrI ACTGG 1 cut(s) 819
BssECI CCNNGG 4 cut(s) 558, 705, 711, 784
BssMI GATC 4 cut(s) 51, 331, 627, 765
BssNI GRCGYC 1 cut(s) 176
BssSI CACGAG 2 cut(s) 367, 392
BssT1I CCWWGG 2 cut(s) 558, 711
Bst2BI CACGAG 2 cut(s) 367, 392
Bst2UI CCWGG 3 cut(s) 221, 707, 824
Bst4CI ACNGT 2 cut(s) 697, 775
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 176
BstC8I GCNNGC 3 cut(s) 614, 672, 742
BstDSI CCRYGG 1 cut(s) 784
BstENI CCTNNNNNAGG 1 cut(s) 710
BstF5I GGATG 2 cut(s) 462, 744
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 2 cut(s) 178, 540
BstKTI GATC 4 cut(s) 54, 334, 630, 768
BstMBI GATC 4 cut(s) 51, 331, 627, 765
BstMCI CGRYCG 3 cut(s) 334, 696, 774
BstMWI GCNNNNNNNGC 2 cut(s) 833, 842
BstNI CCWGG 3 cut(s) 221, 707, 824
BstNSI RCATGY 4 cut(s) 212, 391, 550, 670
BstSCI CCNGG 3 cut(s) 219, 705, 822
BstSLI GKGCMC 2 cut(s) 374, 742
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 5 cut(s) 224, 612, 710, 822, 892
BtgI CCRYGG 1 cut(s) 784
BtsCI GGATG 2 cut(s) 462, 744
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 3 cut(s) 614, 672, 742
CaiI CAGNNNCTG 1 cut(s) 878
CfoI GCGC 2 cut(s) 178, 540
Cfr13I GGNCC 3 cut(s) 562, 610, 820
CviAII CATG 6 cut(s) 194, 209, 388, 433, 547, 667
DinI GGCGCC 1 cut(s) 177
DpnI GATC 4 cut(s) 53, 333, 629, 767
DpnII GATC 4 cut(s) 51, 331, 627, 765
EaeI YGGCCR 2 cut(s) 222, 708
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 558, 711
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 562
Eco88I CYCGRG 1 cut(s) 499
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 562
EcoRII CCWGG 3 cut(s) 219, 705, 822
EcoT14I CCWWGG 2 cut(s) 558, 711
EcoT22I ATGCAT 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 523
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 558, 711
FaeI CATG 6 cut(s) 197, 212, 391, 436, 550, 670
FaqI GGGAC 1 cut(s) 548
FatI CATG 6 cut(s) 193, 208, 387, 432, 546, 666
Fnu4HI GCNGC 1 cut(s) 760
FokI GGATG 2 cut(s) 469, 731
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 1 cut(s) 760
FspBI CTAG 1 cut(s) 572
GlaI GCGC 2 cut(s) 177, 539
GluI GCNGC 1 cut(s) 760
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 5 cut(s) 224, 612, 710, 822, 892
HhaI GCGC 2 cut(s) 178, 540
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 6 cut(s) 197, 212, 391, 436, 550, 670
Hin6I GCGC 2 cut(s) 176, 538
HinP1I GCGC 2 cut(s) 176, 538
HincII GTYRAC 2 cut(s) 187, 664
HindII GTYRAC 2 cut(s) 187, 664
HinfI GANTC 4 cut(s) 34, 288, 484, 789
HpaI GTTAAC 1 cut(s) 187
HphI GGTGA 2 cut(s) 283, 622
Hpy166II GTNNAC 4 cut(s) 187, 372, 664, 740
Hpy188I TCNGA 1 cut(s) 908
Hpy188III TCNNGA 3 cut(s) 272, 769, 872
Hpy8I GTNNAC 4 cut(s) 187, 372, 664, 740
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 2 cut(s) 697, 775
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 8 cut(s) 8, 236, 372, 385, 391, 436, 648, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 833, 842
HpySE526I ACGT 1 cut(s) 660
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 6 cut(s) 197, 212, 391, 436, 550, 670
HspAI GCGC 2 cut(s) 176, 538
KasI GGCGCC 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 4 cut(s) 51, 331, 627, 765
LmnI GCTCC 2 cut(s) 518, 842
LweI GCATC 4 cut(s) 445, 447, 753, 854
MaeI CTAG 1 cut(s) 572
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 2 cut(s) 289, 461
MalI GATC 4 cut(s) 53, 333, 629, 767
MboI GATC 4 cut(s) 51, 331, 627, 765
MboII GAAGA 3 cut(s) 43, 491, 921
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 4 cut(s) 306, 374, 523, 742
MlsI TGGCCA 2 cut(s) 224, 710
MluCI AATT 3 cut(s) 349, 441, 882
MluNI TGGCCA 2 cut(s) 224, 710
Mly113I GGCGCC 1 cut(s) 176
MlyI GAGTC 2 cut(s) 297, 783
MnlI CCTC 5 cut(s) 127, 213, 647, 710, 882
Mox20I TGGCCA 2 cut(s) 224, 710
Mph1103I ATGCAT 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 483
MscI TGGCCA 2 cut(s) 224, 710
MseI TTAA 5 cut(s) 11, 161, 170, 186, 317
MslI CAYNNNNRTG 3 cut(s) 749, 773, 815
Msp20I TGGCCA 2 cut(s) 224, 710
MspA1I CMGCKG 1 cut(s) 674
MspR9I CCNGG 3 cut(s) 221, 707, 824
MvaI CCWGG 3 cut(s) 221, 707, 824
MwoI GCNNNNNNNGC 2 cut(s) 833, 842
NarI GGCGCC 1 cut(s) 176
NdeII GATC 4 cut(s) 51, 331, 627, 765
NlaIII CATG 6 cut(s) 197, 212, 391, 436, 550, 670
NlaIV GGNNCC 4 cut(s) 177, 520, 564, 611
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 4 cut(s) 212, 391, 550, 670
OliI CACNNNNGTG 1 cut(s) 773
PciI ACATGT 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 34, 484
PkrI GCNGC 1 cut(s) 761
Ple19I CGATCG 1 cut(s) 334
PleI GAGTC 2 cut(s) 296, 783
PluTI GGCGCC 1 cut(s) 179
PpsI GAGTC 2 cut(s) 296, 783
PpuMI RGGWCCY 1 cut(s) 562
PscI ACATGT 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 562
Psp6I CCWGG 3 cut(s) 219, 705, 822
PspGI CCWGG 3 cut(s) 219, 705, 822
PspN4I GGNNCC 4 cut(s) 177, 520, 564, 611
PspPI GGNCC 3 cut(s) 562, 610, 820
PspPPI RGGWCCY 1 cut(s) 562
PstNI CAGNNNCTG 1 cut(s) 878
PsuI RGATCY 1 cut(s) 51
PvuI CGATCG 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 674
RseI CAYNNNNRTG 3 cut(s) 749, 773, 815
SaqAI TTAA 5 cut(s) 11, 161, 170, 186, 317
SatI GCNGC 1 cut(s) 760
Sau3AI GATC 4 cut(s) 51, 331, 627, 765
Sau96I GGNCC 3 cut(s) 562, 610, 820
SchI GAGTC 2 cut(s) 297, 783
ScrFI CCNGG 3 cut(s) 221, 707, 824
SduI GDGCHC 4 cut(s) 306, 374, 523, 742
SfaNI GCATC 4 cut(s) 445, 447, 753, 854
SfoI GGCGCC 1 cut(s) 177
SinI GGWCC 1 cut(s) 562
SmiMI CAYNNNNRTG 3 cut(s) 749, 773, 815
Sse9I AATT 3 cut(s) 349, 441, 882
SsiI CCGC 1 cut(s) 759
SspDI GGCGCC 1 cut(s) 175
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 3 cut(s) 219, 705, 822
StyI CCWWGG 2 cut(s) 558, 711
TaaI ACNGT 2 cut(s) 697, 775
TaiI ACGT 1 cut(s) 663
TaqI TCGA 2 cut(s) 286, 330
TasI AATT 3 cut(s) 349, 441, 882
TauI GCSGC 1 cut(s) 762
TfiI GAWTC 2 cut(s) 34, 484
Tru1I TTAA 5 cut(s) 11, 161, 170, 186, 317
Tru9I TTAA 5 cut(s) 11, 161, 170, 186, 317
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 79, 182
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 1 cut(s) 238
VneI GTGCAC 2 cut(s) 370, 738
VpaK11BI GGWCC 1 cut(s) 562
XagI CCTNNNNNAGG 1 cut(s) 710
XapI RAATTY 1 cut(s) 441
XceI RCATGY 4 cut(s) 212, 391, 550, 670
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.