RchiOBHm_Chr6g0297001

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000409
Physical Location & Seq
Forward (+)
58642062 .. 58643682
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26659

Sequence Viewer

Length: 717 bp
ATGGAGTCTCTGGCTAAACAGGCAAAGGTTCCAGCCACAATACTAGCCATTGGGACAGCAAATCCAATAAGCAGTTATTACCAAGAAGACTATCCCGATTTCTTGTTCAAAGTCACCAAAAGCGAGCACAAGACCGAATTAAAAGACAAGTTCAAACGCATATGTGAAAAGTCGATGGTAAAGAAGCGATATCTGGGCGTCACAGAAGAGAGTCTAAAAGCCAACCCTAATATATGCAGCTACAAGGCTCCCTCACTCGACGCACGTCAAGACTTACTGATTCACGAGGTCCCCAAACTCGGTAAAGAAGCGGCGTTGAAGGCCATCAGAGAATGGGGCCAACCCATTTCAAGCCTCACCCACCTCATCTTCTGCACAGCTTCCTGCGTCGACATGCCCGGTGCCGACTTTCAGCTCATCAAGCTCCTCGGCCTAAATCCATCTATCAACCGGTTCATGATCTACCAGCAAGGCTGCTTTGCTGGTGGGACGGTGCTACGGATTGCTAAAGACGTGGCCGAGAACAATGCCGGAGCTCGTGTTCTGATCGTGTGCTGTGAGATCACCACCATGTTTTTCAGCAACCTTGTGACAGCCACTTGGATGTTTTGGTCGGACAGGCTCTGTTTTCGGACGGTGCGGCGGCTTTTATTGTTGGGGCCAATCCGGACCCCAAAAGTGAACGTCAACTGTTCAATATCATGTCTGTTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

238

Amino Acids

26.67

Weight (kDa)

9.07

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 5 - 194 1.1e-84 Chalcone and stilbene synthases, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 390
AccIII TCCGGA 1 cut(s) 666
AciI CCGC 3 cut(s) 311, 640, 643
AcoI YGGCCR 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 299
AgeI ACCGGT 1 cut(s) 450
AgsI TTSAA 5 cut(s) 109, 154, 319, 351, 696
AjiI CACGTC 2 cut(s) 266, 514
AloI GAACNNNNNNTCC 2 cut(s) 525, 557
AluBI AGCT 5 cut(s) 240, 380, 415, 424, 536
AluI AGCT 5 cut(s) 240, 380, 415, 424, 536
Alw21I GWGCWC 2 cut(s) 129, 538
Alw26I GTCTC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 624
Aor13HI TCCGGA 1 cut(s) 666
AoxI GGCC 5 cut(s) 321, 337, 430, 516, 659
ApeKI GCWGC 2 cut(s) 237, 474
AsiGI ACCGGT 1 cut(s) 450
AspS9I GGNCC 4 cut(s) 289, 337, 659, 669
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 3 cut(s) 106, 349, 556
AvaII GGWCC 2 cut(s) 289, 669
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 538
BauI CACGAG 2 cut(s) 284, 537
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 2 cut(s) 129, 538
BbvI GCAGC 2 cut(s) 249, 461
BccI CCATC 3 cut(s) 169, 332, 448
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 44
BisI GCNGC 5 cut(s) 238, 312, 475, 641, 644
BlsI GCNGC 5 cut(s) 239, 313, 476, 642, 645
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 2 cut(s) 289, 669
BmgBI CACGTC 2 cut(s) 266, 514
BmgT120I GGNCC 4 cut(s) 289, 337, 659, 669
BmiI GGNNCC 7 cut(s) 30, 249, 291, 338, 403, 660, 671
BmrFI CCNGG 1 cut(s) 399
BoxI GACNNNNGTC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 427
BsaWI WCCGGW 2 cut(s) 450, 666
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse118I RCCGGY 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 666
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 249, 461
BsgI GTGCAG 1 cut(s) 358
BshFI GGCC 5 cut(s) 323, 339, 432, 518, 661
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 129, 538
BsiSI CCGG 4 cut(s) 399, 451, 531, 667
BslFI GGGAC 3 cut(s) 67, 275, 502
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 3 cut(s) 67, 275, 502
BsnI GGCC 5 cut(s) 323, 339, 432, 518, 661
Bsp1286I GDGCHC 2 cut(s) 129, 538
Bsp13I TCCGGA 1 cut(s) 666
Bsp143I GATC 3 cut(s) 459, 546, 561
BspACI CCGC 3 cut(s) 311, 640, 643
BspANI GGCC 5 cut(s) 323, 339, 432, 518, 661
BspEI TCCGGA 1 cut(s) 666
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 7 cut(s) 30, 249, 291, 338, 403, 660, 671
BspT107I GGYRCC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 450
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 3 cut(s) 459, 546, 561
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 2 cut(s) 284, 537
Bst2BI CACGAG 2 cut(s) 284, 537
Bst4CI ACNGT 3 cut(s) 493, 637, 692
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 609
BstKTI GATC 3 cut(s) 462, 549, 564
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 459, 546, 561
BstMWI GCNNNNNNNGC 3 cut(s) 20, 320, 421
BstNSI RCATGY 1 cut(s) 397
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 2 cut(s) 249, 461
BstV2I GAAGAC 1 cut(s) 93
BsuRI GGCC 5 cut(s) 323, 339, 432, 518, 661
BtrI CACGTC 2 cut(s) 266, 514
BtsCI GGATG 1 cut(s) 609
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 624
CciI TCATGA 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 4 cut(s) 289, 337, 659, 669
CseI GACGC 3 cut(s) 187, 269, 376
CspAI ACCGGT 1 cut(s) 450
CviAII CATG 4 cut(s) 394, 457, 571, 702
DpnI GATC 3 cut(s) 461, 548, 563
DpnII GATC 3 cut(s) 459, 546, 561
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 538
Eco32I GATATC 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 289, 669
Eco53kI GAGCTC 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 289
EcoRV GATATC 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 538
FaeI CATG 4 cut(s) 397, 460, 574, 705
FaiI YATR 8 cut(s) 161, 163, 233, 235, 395, 458, 572, 703
FaqI GGGAC 3 cut(s) 67, 275, 502
FatI CATG 4 cut(s) 393, 456, 570, 701
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 5 cut(s) 238, 312, 475, 641, 644
FokI GGATG 1 cut(s) 616
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 5 cut(s) 238, 312, 475, 641, 644
FspBI CTAG 1 cut(s) 44
GluI GCNGC 5 cut(s) 238, 312, 475, 641, 644
HaeIII GGCC 5 cut(s) 323, 339, 432, 518, 661
HapII CCGG 4 cut(s) 399, 451, 531, 667
HgaI GACGC 3 cut(s) 187, 269, 376
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 4 cut(s) 397, 460, 574, 705
HincII GTYRAC 2 cut(s) 391, 688
HindII GTYRAC 2 cut(s) 391, 688
HinfI GANTC 3 cut(s) 5, 211, 280
HpaII CCGG 4 cut(s) 399, 451, 531, 667
HphI GGTGA 3 cut(s) 106, 349, 556
Hpy166II GTNNAC 3 cut(s) 391, 682, 688
Hpy188I TCNGA 4 cut(s) 329, 546, 616, 633
Hpy188III TCNNGA 5 cut(s) 95, 269, 284, 457, 667
Hpy8I GTNNAC 3 cut(s) 391, 682, 688
Hpy99I CGWCG 2 cut(s) 263, 392
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 3 cut(s) 493, 637, 692
HpyCH4IV ACGT 3 cut(s) 265, 513, 684
HpyCH4V TGCA 2 cut(s) 237, 375
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 320, 421
HpySE526I ACGT 3 cut(s) 265, 513, 684
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 4 cut(s) 397, 460, 574, 705
Kpn2I TCCGGA 1 cut(s) 666
Kzo9I GATC 3 cut(s) 459, 546, 561
LmnI GCTCC 3 cut(s) 253, 429, 533
Lsp1109I GCAGC 2 cut(s) 249, 461
MaeI CTAG 1 cut(s) 44
MaeII ACGT 3 cut(s) 265, 513, 684
MaeIII GTNAC 3 cut(s) 112, 199, 589
MalI GATC 3 cut(s) 461, 548, 563
MboI GATC 3 cut(s) 459, 546, 561
MboII GAAGA 3 cut(s) 98, 218, 361
MhlI GDGCHC 2 cut(s) 129, 538
MluCI AATT 1 cut(s) 137
MlyI GAGTC 2 cut(s) 14, 220
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 5 cut(s) 262, 280, 365, 374, 437
MroI TCCGGA 1 cut(s) 666
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 2 cut(s) 569, 602
MspI CCGG 4 cut(s) 399, 451, 531, 667
MspR9I CCNGG 1 cut(s) 399
MwoI GCNNNNNNNGC 3 cut(s) 20, 320, 421
NciI CCSGG 1 cut(s) 399
NdeI CATATG 1 cut(s) 161
NdeII GATC 3 cut(s) 459, 546, 561
NlaIII CATG 4 cut(s) 397, 460, 574, 705
NlaIV GGNNCC 7 cut(s) 30, 249, 291, 338, 403, 660, 671
NmeAIII GCCGAG 2 cut(s) 408, 544
NmuCI GTSAC 3 cut(s) 112, 199, 589
NspI RCATGY 1 cut(s) 397
PagI TCATGA 1 cut(s) 456
PfeI GAWTC 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 450
PkrI GCNGC 5 cut(s) 239, 313, 476, 642, 645
PleI GAGTC 2 cut(s) 13, 219
PpsI GAGTC 2 cut(s) 13, 219
PpuMI RGGWCCY 1 cut(s) 289
PshAI GACNNNNGTC 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 289
PspN4I GGNNCC 7 cut(s) 30, 249, 291, 338, 403, 660, 671
PspPI GGNCC 4 cut(s) 289, 337, 659, 669
PspPPI RGGWCCY 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 624
RseI CAYNNNNRTG 2 cut(s) 569, 602
SacI GAGCTC 1 cut(s) 538
SalI GTCGAC 1 cut(s) 389
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 5 cut(s) 238, 312, 475, 641, 644
Sau3AI GATC 3 cut(s) 459, 546, 561
Sau96I GGNCC 4 cut(s) 289, 337, 659, 669
SchI GAGTC 2 cut(s) 14, 220
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 2 cut(s) 129, 538
SinI GGWCC 2 cut(s) 289, 669
SmiMI CAYNNNNRTG 2 cut(s) 569, 602
Sse9I AATT 1 cut(s) 137
SsiI CCGC 3 cut(s) 311, 640, 643
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 538
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 3 cut(s) 493, 637, 692
TaiI ACGT 3 cut(s) 268, 516, 687
TaqI TCGA 3 cut(s) 173, 258, 390
TaqII GACCGA 1 cut(s) 149
TasI AATT 1 cut(s) 137
TauI GCSGC 3 cut(s) 314, 643, 646
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseFI GTSAC 3 cut(s) 112, 199, 589
TseI GCWGC 2 cut(s) 237, 474
Tsp45I GTSAC 3 cut(s) 112, 199, 589
TspDTI ATGAA 1 cut(s) 445
TspGWI ACGGA 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 289, 669
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.