Rorug06G0267700

Belongs to the chalcone stilbene synthases family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
41415239 .. 41418445
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0267700.1

Sequence Viewer

Length: 615 bp
ATGGAGTCCCGCAGGCTTTCCATTCTCTGTTCCCATCTCCGCCCCGGTTCGGGTCTTGCCCCGACCCGACAGATTCCAGTTTCCAGGTCCAACTGTGATGCTAACCAGCAACCTAGTGATTCCGACAAGGGAAGTGACCAAAACGACTGCGTTTTCTGCAAAATCATACGCGGTGAATCCCCTGCTTTCAAGATTTACGAGGATGATGTTTGCCTCTGTATATTGGATACACATCCGCTGAGTTGTGGGCATTCTCTTATCATCCCAAGGTCTCATTTTCCTTCACTGAAAGCAACACCTCCAGATGTGGTGGCGGCAATGTGTTCAAAAGTGCCCTTTATCAGCAGTGCAATCATGAAAGCTACTGGTTCTGATTCATTCAACTTGTTAGTTAACAACGGTACAGCTGCAGGCCAAGTTATATTTCATACTCATATTCACATAATTCCGCGCAAGGCCCTTGATTGCCTATGGGCTTCTGAGAGTTTACGGAGGCGGCCCCTGAACATAGACCAGGAAGCATCTCGACTTGCAGACCATGTTCGAGAGCAACTATCATTATCAGACAACTCTAAAGATAACAAAAATGAAGGATCTAGTCTTACCGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

22.26

Weight (kDa)

7.06

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DcpS_C PF11969 50 - 150 2.4e-10 Scavenger mRNA decapping enzyme C-term binding
HIT PF01230 57 - 152 4.8e-22 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 171, 451
AciI CCGC 7 cut(s) 10, 40, 171, 236, 314, 449, 496
AclWI GGATC 1 cut(s) 601
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 49, 50
AgsI TTSAA 3 cut(s) 190, 327, 382
AjnI CCWGG 2 cut(s) 83, 513
AjuI GAANNNNNNNTTGG 2 cut(s) 408, 440
AluBI AGCT 2 cut(s) 362, 407
AluI AGCT 2 cut(s) 362, 407
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 1 cut(s) 601
AoxI GGCC 3 cut(s) 412, 456, 497
ApeKI GCWGC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 3 cut(s) 87, 457, 498
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 394
BccI CCATC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 85, 515
BciVI GTATCC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 3 cut(s) 114, 597, 613
BfmI CTRYAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 3 cut(s) 315, 408, 497
BlsI GCNGC 3 cut(s) 316, 409, 498
Bme1390I CCNGG 3 cut(s) 45, 85, 515
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 3 cut(s) 87, 457, 498
BmiI GGNNCC 1 cut(s) 500
BmrFI CCNGG 3 cut(s) 45, 85, 515
BmsI GCATC 2 cut(s) 88, 530
BpmI CTGGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 43, 266
BsaWI WCCGGW 1 cut(s) 605
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 50
Bse1I ACTGG 2 cut(s) 77, 370
Bse3DI GCAATG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 2 cut(s) 85, 515
BseDI CCNNGG 2 cut(s) 43, 266
BseGI GGATG 3 cut(s) 208, 232, 261
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 49, 50
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 230, 471
BseNI ACTGG 2 cut(s) 77, 370
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 1 cut(s) 394
Bsh1236I CGCG 2 cut(s) 171, 451
BshFI GGCC 3 cut(s) 414, 458, 499
BsiSI CCGG 2 cut(s) 45, 606
BslI CCNNNNNNNGG 2 cut(s) 49, 50
BsmAI GTCTC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 3 cut(s) 414, 458, 499
Bso31I GGTCTC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 593
BspACI CCGC 7 cut(s) 10, 40, 171, 236, 314, 449, 496
BspANI GGCC 3 cut(s) 414, 458, 499
BspCNI CTCAG 2 cut(s) 231, 472
BspFNI CGCG 2 cut(s) 171, 451
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 500
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 2 cut(s) 77, 370
BssECI CCNNGG 2 cut(s) 43, 266
BssMI GATC 1 cut(s) 593
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 2 cut(s) 85, 515
Bst4CI ACNGT 2 cut(s) 95, 401
BstC8I GCNNGC 2 cut(s) 14, 412
BstDEI CTNAG 2 cut(s) 239, 480
BstF5I GGATG 3 cut(s) 208, 232, 261
BstFNI CGCG 2 cut(s) 171, 451
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 1 cut(s) 596
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 1 cut(s) 593
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 2 cut(s) 85, 515
BstSCI CCNGG 3 cut(s) 43, 83, 513
BstSFI CTRYAG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 336
BstUI CGCG 2 cut(s) 171, 451
BstV1I GCAGC 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 3 cut(s) 414, 458, 499
BtsCI GGATG 3 cut(s) 208, 232, 261
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 284, 352
Cac8I GCNNGC 2 cut(s) 14, 412
CciI TCATGA 1 cut(s) 354
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 3 cut(s) 87, 457, 498
Csp6I GTAC 1 cut(s) 402
CviAII CATG 2 cut(s) 355, 539
CviJI RGCY 7 cut(s) 16, 362, 407, 414, 458, 476, 499
CviKI_1 RGCY 7 cut(s) 16, 362, 407, 414, 458, 476, 499
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 2 cut(s) 239, 480
DpnI GATC 1 cut(s) 595
DpnII GATC 1 cut(s) 593
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 83, 513
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 358, 542
FatI CATG 2 cut(s) 354, 538
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 315, 408, 497
FokI GGATG 3 cut(s) 215, 219, 248
Fsp4HI GCNGC 3 cut(s) 315, 408, 497
FspBI CTAG 3 cut(s) 114, 597, 613
GlaI GCGC 1 cut(s) 452
GluI GCNGC 3 cut(s) 315, 408, 497
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 3 cut(s) 414, 458, 499
HapII CCGG 2 cut(s) 45, 606
HhaI GCGC 1 cut(s) 453
Hin1II CATG 2 cut(s) 358, 542
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 5 cut(s) 5, 73, 119, 176, 374
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 2 cut(s) 45, 606
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 394, 488
Hpy188I TCNGA 4 cut(s) 124, 373, 481, 565
Hpy188III TCNNGA 5 cut(s) 190, 302, 355, 525, 545
Hpy8I GTNNAC 2 cut(s) 394, 488
HpyAV CCTTC 2 cut(s) 291, 584
HpyCH4III ACNGT 2 cut(s) 95, 401
HpyCH4V TGCA 4 cut(s) 159, 350, 410, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 2 cut(s) 239, 480
Hsp92II CATG 2 cut(s) 358, 542
HspAI GCGC 1 cut(s) 451
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 1 cut(s) 593
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 2 cut(s) 88, 530
MaeI CTAG 3 cut(s) 114, 597, 613
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 595
MboI GATC 1 cut(s) 593
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 1 cut(s) 444
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 114, 147
MnlI CCTC 4 cut(s) 193, 224, 309, 486
MseI TTAA 1 cut(s) 393
MspA1I CMGCKG 2 cut(s) 238, 407
MspI CCGG 2 cut(s) 45, 606
MspR9I CCNGG 3 cut(s) 45, 85, 515
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 2 cut(s) 85, 515
MvnI CGCG 2 cut(s) 171, 451
MwoI GCNNNNNNNGC 1 cut(s) 156
NciI CCSGG 1 cut(s) 45
NdeII GATC 1 cut(s) 593
NlaIII CATG 2 cut(s) 358, 542
NlaIV GGNNCC 1 cut(s) 500
NmuCI GTSAC 1 cut(s) 134
PagI TCATGA 1 cut(s) 354
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 4 cut(s) 73, 119, 176, 374
PkrI GCNGC 3 cut(s) 316, 409, 498
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 83, 513
PspGI CCWGG 2 cut(s) 83, 513
PspN4I GGNNCC 1 cut(s) 500
PspPI GGNCC 3 cut(s) 87, 457, 498
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 3 cut(s) 315, 408, 497
Sau3AI GATC 1 cut(s) 593
Sau96I GGNCC 3 cut(s) 87, 457, 498
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 45, 85, 515
SduI GDGCHC 1 cut(s) 336
SetI ASST 6 cut(s) 89, 115, 272, 301, 364, 409
SfaNI GCATC 2 cut(s) 88, 530
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 1 cut(s) 87
Sse9I AATT 1 cut(s) 444
SsiI CCGC 7 cut(s) 10, 40, 171, 236, 314, 449, 496
SspMI CTAG 3 cut(s) 114, 597, 613
StyD4I CCNGG 3 cut(s) 43, 83, 513
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 2 cut(s) 95, 401
TaqI TCGA 2 cut(s) 526, 544
TasI AATT 1 cut(s) 444
TauI GCSGC 2 cut(s) 317, 499
TfiI GAWTC 4 cut(s) 73, 119, 176, 374
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 291, 352
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 4 cut(s) 366, 371, 416, 603
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 2 cut(s) 291, 352
VpaK11BI GGWCC 1 cut(s) 87
XspI CTAG 3 cut(s) 114, 597, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.