Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000409

Physical Location & Seq

Genomic Coordinates Reverse (-)

335025 .. 335783

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTTACCGTCGAGGAAGTTCGCAAGGCTCAACGGGCCGAGGGTCCAGCCACAGTCATGGCCATCGGGACATCAACTCCTTCCAACTGTGTGGATCAGGCTACCTACCCCGACTACTACTTTCGTATCACCAACAGCGAGCACAAGGTTGAGCTCAAAGAAAAATTTCAGCGCATGTGCGACAAATCTATGATCAAGAAGCGTTACATGTACTTGACTGAAGAAATTTTAAAAGAGAACCCAAGTGTGTGCGAGTACATGGCTCCTTCAATTGATGCGAGGCAGGACATGGTGGTTGTTGAAGTCCCAAAACTTGGCAAAGAGGCTGCCACCAAAGCCATCAAGGAATGGGGACAGCCCAAGTCCAAAATCACCCACTTGGTCTTTTGCACCACCAGTGGTGTCGACATGCCTGGTGCCGACTACCAGCTCACCAAGCTCTTGGGCCTCCGCCCCTCCGTCAAGCGCCTCATGATGTACCAACAAGGGTGCTTCGCCGGAGGGACGGTCCTCCGTTTGGCCAAGGATTTGGCCGAAAACAACAAGGGTGCACGTGTTCTTGTTGTGTGCTCTGAGATCGACCGCGGTCACCTTCCGGGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0016210 GO:0016740 GO:0016746 GO:0016747 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

202

Amino Acids

22.46

Weight (kDa)

8.82

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chal_sti_synt_N	PF00195	5 - 193	4.9e-103	Chalcone and stilbene synthases, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13930
fragaria_vesca	FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica	MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica	Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis	pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis	RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata	RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora	Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa	Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha	Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana	Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	585
AciI	CCGC	3 cut(s)	451, 583, 585
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	3 cut(s)	60, 519, 531
AcsI	RAATTY	2 cut(s)	164, 225
AcuI	CTGAAG	1 cut(s)	240
AcvI	CACGTG	1 cut(s)	554
AfaI	GTAC	3 cut(s)	212, 257, 479
AfiI	CCNNNNNNNGG	3 cut(s)	314, 517, 598
AflIII	ACRYGT	2 cut(s)	207, 553
AgsI	TTSAA	2 cut(s)	270, 302
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	3 cut(s)	154, 430, 439
AluI	AGCT	3 cut(s)	154, 430, 439
Alw21I	GWGCWC	4 cut(s)	144, 156, 553, 572
Alw44I	GTGCAC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	6 cut(s)	36, 60, 445, 519, 531, 600
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	164, 225
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	174, 468
AspS9I	GGNCC	5 cut(s)	36, 44, 445, 508, 600
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	4 cut(s)	121, 364, 424, 581
AvaII	GGWCC	2 cut(s)	44, 508
BaeGI	GKGCMC	1 cut(s)	553
BaeI	ACNNNNGTAYC	2 cut(s)	109, 142
BalI	TGGCCA	2 cut(s)	62, 521
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	156
BbrPI	CACGTG	1 cut(s)	554
Bbv12I	GWGCWC	4 cut(s)	144, 156, 553, 572
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	71, 347
BciT130I	CCWGG	1 cut(s)	414
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	597
BfaI	CTAG	1 cut(s)	604
BfoI	RGCGCY	1 cut(s)	469
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	414, 597
Bme18I	GGWCC	2 cut(s)	44, 508
BmgT120I	GGNCC	5 cut(s)	36, 44, 445, 508, 600
BmiI	GGNNCC	4 cut(s)	45, 264, 418, 601
BmrFI	CCNGG	2 cut(s)	414, 597
BmsI	GCATC	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	554
BsaJI	CCNNGG	4 cut(s)	39, 522, 583, 596
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 517, 598
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	4 cut(s)	39, 522, 583, 596
BseLI	CCNNNNNNNGG	3 cut(s)	314, 517, 598
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	585
Bsh1285I	CGRYCG	1 cut(s)	583
BshFI	GGCC	6 cut(s)	38, 62, 447, 521, 533, 602
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	583
BsiHKAI	GWGCWC	4 cut(s)	144, 156, 553, 572
BsiSI	CCGG	2 cut(s)	498, 596
BslFI	GGGAC	4 cut(s)	82, 290, 366, 517
BslI	CCNNNNNNNGG	3 cut(s)	314, 517, 598
BsmFI	GGGAC	4 cut(s)	82, 290, 366, 517
BsnI	GGCC	6 cut(s)	38, 62, 447, 521, 533, 602
Bsp1286I	GDGCHC	4 cut(s)	144, 156, 553, 572
Bsp143I	GATC	3 cut(s)	94, 192, 576
BspACI	CCGC	3 cut(s)	451, 583, 585
BspANI	GGCC	6 cut(s)	38, 62, 447, 521, 533, 602
BspCNI	CTCAG	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	4 cut(s)	45, 264, 418, 601
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	4 cut(s)	39, 522, 583, 596
BssMI	GATC	3 cut(s)	94, 192, 576
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	4 cut(s)	10, 55, 89, 508
BstBAI	YACGTR	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	573
BstDSI	CCRYGG	1 cut(s)	583
BstEII	GGTNACC	2 cut(s)	4, 587
BstFNI	CGCG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	2 cut(s)	174, 468
BstKTI	GATC	3 cut(s)	97, 195, 579
BstMBI	GATC	3 cut(s)	94, 192, 576
BstMCI	CGRYCG	1 cut(s)	583
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 335, 436
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	3 cut(s)	178, 211, 412
BstPAI	GACNNNNGTC	1 cut(s)	585
BstPI	GGTNACC	2 cut(s)	4, 587
BstSCI	CCNGG	2 cut(s)	412, 595
BstSLI	GKGCMC	1 cut(s)	553
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	313
BstXI	CCANNNNNNTGG	4 cut(s)	58, 91, 442, 529
BsuRI	GGCC	6 cut(s)	38, 62, 447, 521, 533, 602
BtgI	CCRYGG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	140
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	2 cut(s)	174, 468
Cfr13I	GGNCC	5 cut(s)	36, 44, 445, 508, 600
Cfr42I	CCGCGG	1 cut(s)	586
Csp6I	GTAC	3 cut(s)	211, 256, 478
CviAII	CATG	7 cut(s)	58, 175, 208, 259, 289, 409, 472
CviQI	GTAC	3 cut(s)	211, 256, 478
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	3 cut(s)	96, 194, 578
DpnII	GATC	3 cut(s)	94, 192, 576
DraI	TTTAAA	1 cut(s)	231
EaeI	YGGCCR	3 cut(s)	60, 519, 531
EciI	GGCGGA	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	44, 508
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	240
Eco72I	CACGTG	1 cut(s)	554
Eco91I	GGTNACC	2 cut(s)	4, 587
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	600
EcoO65I	GGTNACC	2 cut(s)	4, 587
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	7 cut(s)	61, 178, 211, 262, 292, 412, 475
FaiI	YATR	8 cut(s)	59, 176, 191, 209, 260, 290, 410, 473
FaqI	GGGAC	4 cut(s)	82, 290, 366, 517
FatI	CATG	7 cut(s)	57, 174, 207, 258, 288, 408, 471
FbaI	TGATCA	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	604
GlaI	GCGC	2 cut(s)	173, 467
GluI	GCNGC	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	469
HaeIII	GGCC	6 cut(s)	38, 62, 447, 521, 533, 602
HapII	CCGG	2 cut(s)	498, 596
HhaI	GCGC	2 cut(s)	174, 468
Hin1II	CATG	7 cut(s)	61, 178, 211, 262, 292, 412, 475
Hin6I	GCGC	2 cut(s)	172, 466
HinP1I	GCGC	2 cut(s)	172, 466
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HpaII	CCGG	2 cut(s)	498, 596
HphI	GGTGA	4 cut(s)	121, 364, 424, 581
Hpy166II	GTNNAC	2 cut(s)	406, 551
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	3 cut(s)	67, 196, 472
Hpy8I	GTNNAC	2 cut(s)	406, 551
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	90, 276, 602
HpyCH4III	ACNGT	4 cut(s)	10, 55, 89, 508
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	2 cut(s)	390, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 335, 436
HpyF3I	CTNAG	1 cut(s)	573
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	7 cut(s)	61, 178, 211, 262, 292, 412, 475
HspAI	GCGC	2 cut(s)	172, 466
Ksp22I	TGATCA	1 cut(s)	192
KspI	CCGCGG	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	94, 192, 576
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	8 cut(s)	60, 83, 269, 399, 409, 426, 440, 511
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	604
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	3 cut(s)	4, 203, 587
MalI	GATC	3 cut(s)	96, 194, 578
MboI	GATC	3 cut(s)	94, 192, 576
MboII	GAAGA	1 cut(s)	233
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	4 cut(s)	144, 156, 553, 572
MlsI	TGGCCA	2 cut(s)	62, 521
MluCI	AATT	3 cut(s)	164, 225, 270
MluNI	TGGCCA	2 cut(s)	62, 521
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	7, 34, 273, 316, 458, 466, 479, 494, 521
Mox20I	TGGCCA	2 cut(s)	62, 521
MroXI	GAANNNNTTC	1 cut(s)	165
MscI	TGGCCA	2 cut(s)	62, 521
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	56
Msp20I	TGGCCA	2 cut(s)	62, 521
MspA1I	CMGCKG	1 cut(s)	585
MspI	CCGG	2 cut(s)	498, 596
MspR9I	CCNGG	2 cut(s)	414, 597
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	35, 335, 436
NciI	CCSGG	1 cut(s)	597
NdeII	GATC	3 cut(s)	94, 192, 576
NlaIII	CATG	7 cut(s)	61, 178, 211, 262, 292, 412, 475
NlaIV	GGNNCC	4 cut(s)	45, 264, 418, 601
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	587
NspI	RCATGY	3 cut(s)	178, 211, 412
PagI	TCATGA	1 cut(s)	471
PciI	ACATGT	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	328
PmaCI	CACGTG	1 cut(s)	554
PmlI	CACGTG	1 cut(s)	554
Ppu21I	YACGTR	1 cut(s)	554
PscI	ACATGT	1 cut(s)	207
PshAI	GACNNNNGTC	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	412
PspCI	CACGTG	1 cut(s)	554
PspEI	GGTNACC	2 cut(s)	4, 587
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	4 cut(s)	45, 264, 418, 601
PspPI	GGNCC	5 cut(s)	36, 44, 445, 508, 600
RsaI	GTAC	3 cut(s)	212, 257, 479
RsaNI	GTAC	3 cut(s)	211, 256, 478
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	156
SacII	CCGCGG	1 cut(s)	586
SalI	GTCGAC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	94, 192, 576
Sau96I	GGNCC	5 cut(s)	36, 44, 445, 508, 600
ScrFI	CCNGG	2 cut(s)	414, 597
SduI	GDGCHC	4 cut(s)	144, 156, 553, 572
SetI	ASST	7 cut(s)	107, 150, 156, 432, 441, 556, 594
SfaNI	GCATC	1 cut(s)	265
Sfr303I	CCGCGG	1 cut(s)	586
SgrBI	CCGCGG	1 cut(s)	586
SinI	GGWCC	2 cut(s)	44, 508
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	3 cut(s)	164, 225, 270
SsiI	CCGC	3 cut(s)	451, 583, 585
SspMI	CTAG	1 cut(s)	604
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	412, 595
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	10, 55, 89, 508
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	3 cut(s)	12, 405, 579
TasI	AATT	3 cut(s)	164, 225, 270
TatI	WGTACW	2 cut(s)	210, 255
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	587
TspGWI	ACGGA	2 cut(s)	448, 503
TspRI	CASTG	1 cut(s)	403
Van91I	CCANNNNNTGG	1 cut(s)	314
VneI	GTGCAC	1 cut(s)	549
VpaK11BI	GGWCC	2 cut(s)	44, 508
XapI	RAATTY	2 cut(s)	164, 225
XceI	RCATGY	3 cut(s)	178, 211, 412
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.