Prupe.4G253100_v2.0.a1

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000409
Physical Location & Seq
Forward (+)
17184375 .. 17186074
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G253100.1

Sequence Viewer

Length: 684 bp
ATGGAAGGAAAGTTCCTGGAAGATGCAAGGAAACTTCCTCAATTGATAAATACAGGGAAGGGAAAGTTCCTGGAAGATGCAAGGAAACTTCCTGAATTGATAAATACATGGAAGGGAAAGTTCCTGGAAGATGCAAGGAAACTTCCTATGTGGGCTCCACCTTCAAACTTTTACAACATATATATATATATAATTAATCAAAGTCTAATGCCATGTGCTGCCAACGCCAGACCAACATACCAAGATGGCTTCATGCAATATCAAAGGGTAAGAGAAGACCCAATTATTGGTTGGATTTTTGAACCTCTATCAACTTTTCTATATTATCTTTCACCAGATGTGCCAAAGTTGGTCGGTGCAAACATTGAGGAGCTTTTGGTAAAAGGGTTTAGCGAAATTGATGGGATAAATAATGATTGGAACGCGTTGTTCTATTGCATCCACCCTGGTGGACCGGCCATTTTAGACAAGGTTGAAGAAAAACTGGGTCTGAATGAGGAGAAGCTGAGAGCAACCAGGCATGTATTGAGGGAGTATGGGAACATGGGAGCTCCATCTAAGTCAATGGAGAAAGGAAAAGCCACGACTGGTGAAGGGCTGGAATGGGGTGTTTTGATTGGGATCGGGCCAGGGCTAACCGTGGAGACTGTTGTACTCCATAGTGTCCGCATTGCTGCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

228

Amino Acids

25.53

Weight (kDa)

6.0

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 287
AccII CGCG 1 cut(s) 425
AciI CCGC 1 cut(s) 667
AclWI GGATC 1 cut(s) 629
AcoI YGGCCR 1 cut(s) 456
AfaI GTAC 1 cut(s) 654
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 3 cut(s) 165, 302, 476
AjnI CCWGG 6 cut(s) 15, 69, 123, 445, 515, 628
AleI CACNNNNGTG 1 cut(s) 447
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 3 cut(s) 373, 505, 551
AluI AGCT 3 cut(s) 373, 505, 551
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 1 cut(s) 638
AlwI GGATC 1 cut(s) 629
AoxI GGCC 2 cut(s) 456, 626
ApeKI GCWGC 2 cut(s) 218, 674
AseI ATTAAT 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 452, 626
AsuHPI GGTGA 2 cut(s) 324, 602
AvaII GGWCC 1 cut(s) 452
BanII GRGCYC 2 cut(s) 157, 553
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 2 cut(s) 205, 661
BccI CCATC 3 cut(s) 239, 395, 562
BciT130I CCWGG 6 cut(s) 17, 71, 125, 447, 517, 630
BcoDI GTCTC 1 cut(s) 638
BisI GCNGC 2 cut(s) 219, 675
BlsI GCNGC 2 cut(s) 220, 676
Bme1390I CCNGG 6 cut(s) 17, 71, 125, 447, 517, 630
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 452, 626
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 6 cut(s) 17, 71, 125, 447, 517, 630
BmrI ACTGGG 1 cut(s) 494
BmsI GCATC 4 cut(s) 13, 67, 121, 447
BmuI ACTGGG 1 cut(s) 494
BpiI GAAGAC 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 620
BsaJI CCNNGG 3 cut(s) 445, 629, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 2 cut(s) 489, 592
Bse3DI GCAATG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 620
BseBI CCWGG 6 cut(s) 17, 71, 125, 447, 517, 630
BseDI CCNNGG 3 cut(s) 445, 629, 639
BseGI GGATG 1 cut(s) 438
BseJI GATNNNNATC 1 cut(s) 620
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 2 cut(s) 489, 592
BseRI GAGGAG 2 cut(s) 383, 512
BseXI GCAGC 2 cut(s) 205, 661
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 2 cut(s) 458, 628
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 638
BsnI GGCC 2 cut(s) 458, 628
Bsp1286I GDGCHC 2 cut(s) 157, 553
Bsp143I GATC 1 cut(s) 621
BspACI CCGC 1 cut(s) 667
BspANI GGCC 2 cut(s) 458, 628
BspCNI CTCAG 1 cut(s) 498
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 2 cut(s) 489, 592
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 3 cut(s) 445, 629, 639
BssMI GATC 1 cut(s) 621
Bst2UI CCWGG 6 cut(s) 17, 71, 125, 447, 517, 630
Bst4CI ACNGT 2 cut(s) 640, 649
BstC8I GCNNGC 1 cut(s) 679
BstDEI CTNAG 2 cut(s) 506, 558
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 1 cut(s) 438
BstFNI CGCG 1 cut(s) 425
BstKTI GATC 1 cut(s) 624
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 1 cut(s) 621
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 6 cut(s) 17, 71, 125, 447, 517, 630
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 6 cut(s) 15, 69, 123, 445, 515, 628
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 2 cut(s) 205, 661
BstV2I GAAGAC 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 449
BsuRI GGCC 2 cut(s) 458, 628
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 679
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 452, 626
Csp6I GTAC 1 cut(s) 653
CviAII CATG 5 cut(s) 108, 213, 253, 521, 544
CviQI GTAC 1 cut(s) 653
DdeI CTNAG 2 cut(s) 506, 558
DpnI GATC 1 cut(s) 623
DpnII GATC 1 cut(s) 621
EaeI YGGCCR 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 551
Eco24I GRGCYC 2 cut(s) 157, 553
Eco47I GGWCC 1 cut(s) 452
Eco53kI GAGCTC 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 551
EcoRII CCWGG 6 cut(s) 15, 69, 123, 445, 515, 628
EcoT38I GRGCYC 2 cut(s) 157, 553
FaeI CATG 5 cut(s) 111, 216, 256, 524, 547
FatI CATG 5 cut(s) 107, 212, 252, 520, 543
Fnu4HI GCNGC 2 cut(s) 219, 675
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 2 cut(s) 157, 553
Fsp4HI GCNGC 2 cut(s) 219, 675
GluI GCNGC 2 cut(s) 219, 675
HaeIII GGCC 2 cut(s) 458, 628
HapII CCGG 1 cut(s) 455
Hin1II CATG 5 cut(s) 111, 216, 256, 524, 547
HpaII CCGG 1 cut(s) 455
HphI GGTGA 2 cut(s) 324, 602
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 1 cut(s) 492
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 452
HpyAV CCTTC 4 cut(s) 52, 106, 171, 587
HpyCH4III ACNGT 2 cut(s) 640, 649
HpyCH4V TGCA 6 cut(s) 26, 80, 134, 256, 359, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 506, 558
Hsp92II CATG 5 cut(s) 111, 216, 256, 524, 547
Kzo9I GATC 1 cut(s) 621
LmnI GCTCC 4 cut(s) 160, 370, 548, 556
Lsp1109I GCAGC 2 cut(s) 205, 661
LweI GCATC 4 cut(s) 13, 67, 121, 447
MalI GATC 1 cut(s) 623
MboI GATC 1 cut(s) 621
MboII GAAGA 5 cut(s) 32, 86, 140, 287, 488
MfeI CAATTG 1 cut(s) 41
MhlI GDGCHC 2 cut(s) 157, 553
MluCI AATT 5 cut(s) 41, 95, 192, 282, 396
MluI ACGCGT 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 5 cut(s) 48, 315, 361, 490, 522
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 447
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 6 cut(s) 17, 71, 125, 447, 517, 630
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 6 cut(s) 17, 71, 125, 447, 517, 630
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 1 cut(s) 621
NlaIII CATG 5 cut(s) 111, 216, 256, 524, 547
NlaIV GGNNCC 1 cut(s) 156
NspI RCATGY 1 cut(s) 524
OliI CACNNNNGTG 1 cut(s) 447
PflMI CCANNNNNTGG 1 cut(s) 287
PfoI TCCNGGA 3 cut(s) 15, 69, 123
PkrI GCNGC 2 cut(s) 220, 676
PshBI ATTAAT 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 553
Psp6I CCWGG 6 cut(s) 15, 69, 123, 445, 515, 628
PspGI CCWGG 6 cut(s) 15, 69, 123, 445, 515, 628
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 2 cut(s) 452, 626
RsaI GTAC 1 cut(s) 654
RsaNI GTAC 1 cut(s) 653
RseI CAYNNNNRTG 1 cut(s) 447
SacI GAGCTC 1 cut(s) 553
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 219, 675
Sau3AI GATC 1 cut(s) 621
Sau96I GGNCC 2 cut(s) 452, 626
ScrFI CCNGG 6 cut(s) 17, 71, 125, 447, 517, 630
SduI GDGCHC 2 cut(s) 157, 553
SetI ASST 6 cut(s) 163, 307, 375, 474, 507, 553
SfaNI GCATC 4 cut(s) 13, 67, 121, 447
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 447
Sse9I AATT 5 cut(s) 41, 95, 192, 282, 396
SsiI CCGC 1 cut(s) 667
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 6 cut(s) 15, 69, 123, 445, 515, 628
TaaI ACNGT 2 cut(s) 640, 649
TasI AATT 5 cut(s) 41, 95, 192, 282, 396
TatI WGTACW 1 cut(s) 652
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 2 cut(s) 218, 674
TspDTI ATGAA 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 452
VspI ATTAAT 1 cut(s) 195
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.