Rw6G033070

Belongs to the chalcone stilbene synthases family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
57279565 .. 57281216
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033070.1

Sequence Viewer

Length: 1107 bp
ATGGAGTCTCTGGCTAAACAGGCAAAGGTTCCAGCCACAATACTGGCCATTGGGACTGCAAATCCAATAAGCTGTTATTACCAAGAAGACTATCCCGATTTCTTGTTCAAAGTCACCAAAAGCGAGCACAAGACCGAATTAAAAGACAAGTTCAAACGCATATGTGAAAAGTCGATGGTAAAGAAGCGATATCTGGGCGTCACAGAAGAGAGTCTAAAAGCCAACCCTAATATATGCAGCTACAAGGCTCCCTCACTCGACGCACGTCAAGACTTACTGATTCACGAGGTCCCCAAACTCGGTAAAGAAGCGGCGTTGAAGGCCATCAGAGAATGGGGCCAACCCATTTCAAGCCTCACCCACCTCATCTTCTGCACAGCTTCCTGCGTCGACATTCCCGGTGCCGACTTTCAGCTCATCAAGCTCCTCGGCCTAAATCCATCTATCAACCGGTTCATGATCTACCAGCAAGGCTGCTTTGCTGGTGGGACGGTGCTACGGATTGCTAAAGACGTGGCCGAGAACAATGCCGGAGCTCGTGTTCTGATCGTGTGCTGTGAGATCACCACCATGTTTTTTCATCAACCTTGCGACAGCCACTTGGATGTTTTGGTCGGACAGGCTCTGTTTTCGGACGGTGCGGCGGCTTTGATTGTTGGGGCCAATCCGGACCCCAAAAGTGAACGTCAACTGTTCAATATCATGTCTGTTAGAGGGACTATTATCCCAAACTCGGAGCATGGAGTTGTGGCACATTTGCGTGAGATGGGGTTTGAGTATTACCTATCATCAGAAGTTCCAAAGTTGGTTGGTGGGAAAATCGAAGAGTGTTTGAGTAAAGGGTTTGAGGGCATTGGGGTTAATGGTGATTGGAACTCGTTGTTCTTTAGCGTTCATCCTGGGGGTCCTGCAATTCTGGACAAGGTTGAAGAAGAGCTGGGTTTGAAGGAGGGGAAGCTGAAGGCAACAAGGCATGTGCTGAGTGAGTTTGGGAATATGGGAGCTCCATCTGTGCTTTTTATTTTGGATGAGATGAGGAAGAAGTCAATGGAGGAAGCAAAAGCCACAAGCCCACAACTGGTGAAGGTTTGGAATGGGGTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

368

Amino Acids

40.44

Weight (kDa)

6.76

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 5 - 223 1e-99 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C PF02797 236 - 357 1.7e-37 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 390
AccIII TCCGGA 1 cut(s) 667
AciI CCGC 3 cut(s) 311, 641, 644
AcoI YGGCCR 2 cut(s) 45, 516
AcuI CTGAAG 1 cut(s) 980
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 3 cut(s) 299, 733, 1078
AgeI ACCGGT 1 cut(s) 450
AgsI TTSAA 7 cut(s) 109, 154, 319, 351, 697, 929, 946
AjiI CACGTC 2 cut(s) 266, 514
AjnI CCWGG 1 cut(s) 898
AloI GAACNNNNNNTCC 2 cut(s) 525, 557
AluBI AGCT 9 cut(s) 72, 240, 380, 415, 424, 536, 937, 958, 1004
AluI AGCT 9 cut(s) 72, 240, 380, 415, 424, 536, 937, 958, 1004
Alw21I GWGCWC 3 cut(s) 129, 538, 1006
Alw26I GTCTC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 625
Aor13HI TCCGGA 1 cut(s) 667
AoxI GGCC 6 cut(s) 45, 321, 337, 430, 516, 660
ApeKI GCWGC 2 cut(s) 237, 474
AsiGI ACCGGT 1 cut(s) 450
AspS9I GGNCC 5 cut(s) 289, 337, 660, 670, 905
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 5 cut(s) 106, 349, 556, 878, 1093
AvaII GGWCC 3 cut(s) 289, 670, 905
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 2 cut(s) 538, 1006
BauI CACGAG 2 cut(s) 284, 537
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 3 cut(s) 129, 538, 1006
BbvI GCAGC 2 cut(s) 249, 461
BccI CCATC 5 cut(s) 169, 332, 448, 760, 1015
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 1 cut(s) 900
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 12
BisI GCNGC 5 cut(s) 238, 312, 475, 642, 645
BlsI GCNGC 5 cut(s) 239, 313, 476, 643, 646
Bme1390I CCNGG 2 cut(s) 399, 900
Bme18I GGWCC 3 cut(s) 289, 670, 905
BmgBI CACGTC 2 cut(s) 266, 514
BmgT120I GGNCC 5 cut(s) 289, 337, 660, 670, 905
BmiI GGNNCC 8 cut(s) 30, 249, 291, 338, 403, 661, 672, 906
BmrFI CCNGG 2 cut(s) 399, 900
BoxI GACNNNNGTC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 427, 899
BsaWI WCCGGW 2 cut(s) 450, 667
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 299, 733, 1078
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 2 cut(s) 48, 1083
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 1 cut(s) 900
BseDI CCNNGG 2 cut(s) 427, 899
BseGI GGATG 3 cut(s) 610, 895, 1033
BseLI CCNNNNNNNGG 3 cut(s) 299, 733, 1078
BseMII CTCAG 1 cut(s) 971
BseNI ACTGG 2 cut(s) 48, 1083
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 249, 461
BseYI CCCAGC 1 cut(s) 937
BsgI GTGCAG 1 cut(s) 358
BshFI GGCC 6 cut(s) 47, 323, 339, 432, 518, 662
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 450
BsiHKAI GWGCWC 3 cut(s) 129, 538, 1006
BsiSI CCGG 4 cut(s) 399, 451, 531, 668
BslFI GGGAC 4 cut(s) 67, 275, 502, 730
BslI CCNNNNNNNGG 3 cut(s) 299, 733, 1078
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 4 cut(s) 67, 275, 502, 730
BsnI GGCC 6 cut(s) 47, 323, 339, 432, 518, 662
Bsp1286I GDGCHC 3 cut(s) 129, 538, 1006
Bsp13I TCCGGA 1 cut(s) 667
Bsp143I GATC 3 cut(s) 459, 546, 561
BspACI CCGC 3 cut(s) 311, 641, 644
BspANI GGCC 6 cut(s) 47, 323, 339, 432, 518, 662
BspCNI CTCAG 1 cut(s) 972
BspEI TCCGGA 1 cut(s) 667
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 8 cut(s) 30, 249, 291, 338, 403, 661, 672, 906
BspQI GCTCTTC 1 cut(s) 927
BspT107I GGYRCC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 2 cut(s) 48, 1083
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 2 cut(s) 427, 899
BssMI GATC 3 cut(s) 459, 546, 561
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 2 cut(s) 284, 537
Bst2BI CACGAG 2 cut(s) 284, 537
Bst2UI CCWGG 1 cut(s) 900
Bst4CI ACNGT 3 cut(s) 493, 638, 693
Bst6I CTCTTC 3 cut(s) 201, 819, 927
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 980
BstF5I GGATG 3 cut(s) 610, 895, 1033
BstKTI GATC 3 cut(s) 462, 549, 564
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 459, 546, 561
BstMWI GCNNNNNNNGC 3 cut(s) 20, 320, 421
BstNI CCWGG 1 cut(s) 900
BstNSI RCATGY 1 cut(s) 977
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 397, 898
BstV1I GCAGC 2 cut(s) 249, 461
BstV2I GAAGAC 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuRI GGCC 6 cut(s) 47, 323, 339, 432, 518, 662
BtrI CACGTC 2 cut(s) 266, 514
BtsCI GGATG 3 cut(s) 610, 895, 1033
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 625
CciI TCATGA 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 5 cut(s) 289, 337, 660, 670, 905
CseI GACGC 3 cut(s) 187, 269, 376
CspAI ACCGGT 1 cut(s) 450
CviAII CATG 5 cut(s) 457, 571, 703, 740, 974
DdeI CTNAG 1 cut(s) 980
DpnI GATC 3 cut(s) 461, 548, 563
DpnII GATC 3 cut(s) 459, 546, 561
EaeI YGGCCR 2 cut(s) 45, 516
Eam1104I CTCTTC 3 cut(s) 201, 819, 927
EarI CTCTTC 3 cut(s) 201, 819, 927
Ecl136II GAGCTC 2 cut(s) 536, 1004
Eco24I GRGCYC 2 cut(s) 538, 1006
Eco32I GATATC 1 cut(s) 191
Eco47I GGWCC 3 cut(s) 289, 670, 905
Eco53kI GAGCTC 2 cut(s) 536, 1004
Eco57I CTGAAG 1 cut(s) 980
EcoICRI GAGCTC 2 cut(s) 536, 1004
EcoO109I RGGNCCY 2 cut(s) 289, 905
EcoRII CCWGG 1 cut(s) 898
EcoRV GATATC 1 cut(s) 191
EcoT38I GRGCYC 2 cut(s) 538, 1006
FaeI CATG 5 cut(s) 460, 574, 706, 743, 977
FaqI GGGAC 4 cut(s) 67, 275, 502, 730
FatI CATG 5 cut(s) 456, 570, 702, 739, 973
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 5 cut(s) 238, 312, 475, 642, 645
FokI GGATG 3 cut(s) 617, 882, 1040
FriOI GRGCYC 2 cut(s) 538, 1006
Fsp4HI GCNGC 5 cut(s) 238, 312, 475, 642, 645
GluI GCNGC 5 cut(s) 238, 312, 475, 642, 645
GsaI CCCAGC 1 cut(s) 941
HaeIII GGCC 6 cut(s) 47, 323, 339, 432, 518, 662
HapII CCGG 4 cut(s) 399, 451, 531, 668
HgaI GACGC 3 cut(s) 187, 269, 376
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 5 cut(s) 460, 574, 706, 743, 977
HincII GTYRAC 2 cut(s) 391, 689
HindII GTYRAC 2 cut(s) 391, 689
HinfI GANTC 3 cut(s) 5, 211, 280
HpaII CCGG 4 cut(s) 399, 451, 531, 668
HphI GGTGA 5 cut(s) 106, 349, 556, 878, 1093
Hpy166II GTNNAC 3 cut(s) 391, 683, 689
Hpy188I TCNGA 6 cut(s) 329, 546, 617, 634, 736, 793
Hpy188III TCNNGA 6 cut(s) 95, 269, 284, 457, 668, 917
Hpy8I GTNNAC 3 cut(s) 391, 683, 689
Hpy99I CGWCG 2 cut(s) 263, 392
HpyAV CCTTC 4 cut(s) 313, 940, 955, 1078
HpyCH4III ACNGT 3 cut(s) 493, 638, 693
HpyCH4IV ACGT 3 cut(s) 265, 513, 685
HpyCH4V TGCA 4 cut(s) 59, 237, 375, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 320, 421
HpyF3I CTNAG 1 cut(s) 980
HpySE526I ACGT 3 cut(s) 265, 513, 685
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 5 cut(s) 460, 574, 706, 743, 977
Kpn2I TCCGGA 1 cut(s) 667
Kzo9I GATC 3 cut(s) 459, 546, 561
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 6 cut(s) 253, 429, 533, 736, 1001, 1009
Lsp1109I GCAGC 2 cut(s) 249, 461
MaeII ACGT 3 cut(s) 265, 513, 685
MaeIII GTNAC 2 cut(s) 112, 199
MalI GATC 3 cut(s) 461, 548, 563
MboI GATC 3 cut(s) 459, 546, 561
MboII GAAGA 7 cut(s) 98, 218, 361, 836, 941, 944, 1051
MhlI GDGCHC 3 cut(s) 129, 538, 1006
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 137, 912
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 2 cut(s) 14, 220
MmeI TCCRAC 1 cut(s) 595
Mox20I TGGCCA 1 cut(s) 47
MroI TCCGGA 1 cut(s) 667
MscI TGGCCA 1 cut(s) 47
MseI TTAA 3 cut(s) 140, 861, 1105
MslI CAYNNNNRTG 3 cut(s) 569, 603, 759
Msp20I TGGCCA 1 cut(s) 47
MspI CCGG 4 cut(s) 399, 451, 531, 668
MspR9I CCNGG 2 cut(s) 399, 900
MvaI CCWGG 1 cut(s) 900
MwoI GCNNNNNNNGC 3 cut(s) 20, 320, 421
NciI CCSGG 1 cut(s) 399
NdeI CATATG 1 cut(s) 161
NdeII GATC 3 cut(s) 459, 546, 561
NlaIII CATG 5 cut(s) 460, 574, 706, 743, 977
NlaIV GGNNCC 8 cut(s) 30, 249, 291, 338, 403, 661, 672, 906
NmeAIII GCCGAG 2 cut(s) 408, 544
NmuCI GTSAC 2 cut(s) 112, 199
NspI RCATGY 1 cut(s) 977
PagI TCATGA 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 927
PfeI GAWTC 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 450
PkrI GCNGC 5 cut(s) 239, 313, 476, 643, 646
PleI GAGTC 2 cut(s) 13, 219
PpsI GAGTC 2 cut(s) 13, 219
PpuMI RGGWCCY 2 cut(s) 289, 905
PshAI GACNNNNGTC 1 cut(s) 264
Psp124BI GAGCTC 2 cut(s) 538, 1006
Psp5II RGGWCCY 2 cut(s) 289, 905
Psp6I CCWGG 1 cut(s) 898
PspFI CCCAGC 1 cut(s) 937
PspGI CCWGG 1 cut(s) 898
PspN4I GGNNCC 8 cut(s) 30, 249, 291, 338, 403, 661, 672, 906
PspPI GGNCC 5 cut(s) 289, 337, 660, 670, 905
PspPPI RGGWCCY 2 cut(s) 289, 905
PstNI CAGNNNCTG 1 cut(s) 625
RseI CAYNNNNRTG 3 cut(s) 569, 603, 759
SacI GAGCTC 2 cut(s) 538, 1006
SalI GTCGAC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 3 cut(s) 140, 861, 1105
SatI GCNGC 5 cut(s) 238, 312, 475, 642, 645
Sau3AI GATC 3 cut(s) 459, 546, 561
Sau96I GGNCC 5 cut(s) 289, 337, 660, 670, 905
SchI GAGTC 2 cut(s) 14, 220
ScrFI CCNGG 2 cut(s) 399, 900
SduI GDGCHC 3 cut(s) 129, 538, 1006
SinI GGWCC 3 cut(s) 289, 670, 905
SmiMI CAYNNNNRTG 3 cut(s) 569, 603, 759
Sse9I AATT 2 cut(s) 137, 912
SsiI CCGC 3 cut(s) 311, 641, 644
SstI GAGCTC 2 cut(s) 538, 1006
StyD4I CCNGG 2 cut(s) 397, 898
TaaI ACNGT 3 cut(s) 493, 638, 693
TaiI ACGT 3 cut(s) 268, 516, 688
TaqI TCGA 4 cut(s) 173, 258, 390, 822
TaqII GACCGA 1 cut(s) 149
TasI AATT 2 cut(s) 137, 912
TauI GCSGC 3 cut(s) 314, 644, 647
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 3 cut(s) 140, 861, 1105
Tru9I TTAA 3 cut(s) 140, 861, 1105
TseFI GTSAC 2 cut(s) 112, 199
TseI GCWGC 2 cut(s) 237, 474
Tsp45I GTSAC 2 cut(s) 112, 199
TspDTI ATGAA 3 cut(s) 445, 569, 884
TspGWI ACGGA 1 cut(s) 514
VpaK11BI GGWCC 3 cut(s) 289, 670, 905
XceI RCATGY 1 cut(s) 977
XmiI GTMKAC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.