pycom15g11930

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000409
Physical Location & Seq
Reverse (-)
8106033 .. 8107349
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11930.2

Sequence Viewer

Length: 909 bp
ATGTGTGCATTAAAATATATCCTAACATTGAAGATTCCACAAGTTAGTAGGATCTCTCATTGCTATATAAGGAATGGGGTAGTGCCATTCATTTTATCGCAACCTTTCAACACCCCGTCTCTTTCAAGTTTCAACAAATCCCTACTCTATATCTGCTCTTTAACTTGCTTCATGGCGCCTTTGGTTAAGAATCATGTAGAGCCTCCACATGCCAAAATCCTAGCCATTGGCACTGCAAATCCTCCCAACGTCTACTACCAAAAAGACTATCCTGATTTCTTGTTTCGAGTCACCAAAAATGAGCACAGAACAGATTTAAGAGAGAAGTTTGATCGTATTTGTGAGAAATCAAGAACAAGAAAGCGTTACTTGTATCTAACAGAAGAGATTCTAAAGGCTAACCCAAGCATATATACCTATGGAGCCCCATCACTCGATGTGCGCCAAGACATGTTGAACCCTGAGGTCCCAAAGCTAGGGCAACAAGCAGCACTGAAAGCCATCAAAGAGTGGGGCCAGCCCATCTCAAAGATCACCCACCTCATCTTTTGCACAGCTTCTTGCGTTGACATGCCAGGTGCCGACTTCCAATTGGTCAAGCTCCTCGGCCTTAACCCATCTGTTACCAGAACCATGATCTACGAAGCTGGTTGCTATGCTGGTGCGACTGTCCTCCGCTTGGCCAAGGACTTCGCAGAGAACAACGAGGGTGCACGCGTCCTTGTGGTGTGTGCTGAGATCACGACTGTGTTTTTCCACGGACTCACTGACACCCACCTTGACATACTGGTGGGCCAGGCTCTTTTTGCTGACGGAGCATCTGCTGTGATAGTTGGGGCTAATCCAGAGCCTGAAATTGAGAGGTCACTGTTTGAAATTGTGCCTTGCAGCCAGATCGATCATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

303

Amino Acids

33.74

Weight (kDa)

7.99

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 175, 578
AccI GTMKAC 1 cut(s) 252
AccII CGCG 1 cut(s) 717
AciI CCGC 1 cut(s) 676
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 476, 679
AflIII ACRYGT 2 cut(s) 450, 715
AgsI TTSAA 6 cut(s) 31, 109, 126, 133, 457, 875
AjnI CCWGG 2 cut(s) 574, 795
AleI CACNNNNGTG 1 cut(s) 746
AluBI AGCT 4 cut(s) 475, 557, 601, 647
AluI AGCT 4 cut(s) 475, 557, 601, 647
Alw21I GWGCWC 2 cut(s) 306, 715
Alw26I GTCTC 1 cut(s) 123
Alw44I GTGCAC 1 cut(s) 711
AlwI GGATC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 851
AoxI GGCC 4 cut(s) 514, 607, 681, 793
ApaLI GTGCAC 1 cut(s) 711
ApeKI GCWGC 2 cut(s) 488, 888
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 2 cut(s) 178, 444
AspS9I GGNCC 3 cut(s) 466, 514, 793
AsuHPI GGTGA 2 cut(s) 283, 526
AvaII GGWCC 1 cut(s) 466
AxyI CCTNAGG 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 715
BalI TGGCCA 1 cut(s) 683
BanI GGYRCC 2 cut(s) 175, 578
BanII GRGCYC 1 cut(s) 427
Bbv12I GWGCWC 2 cut(s) 306, 715
BbvI GCAGC 2 cut(s) 500, 900
BccI CCATC 4 cut(s) 436, 509, 530, 625
BcgI CGANNNNNNTGC 1 cut(s) 877
BciT130I CCWGG 2 cut(s) 576, 797
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 2 cut(s) 221, 476
BfoI RGCGCY 1 cut(s) 179
BisI GCNGC 2 cut(s) 489, 889
BlsI GCNGC 2 cut(s) 490, 890
Bme1390I CCNGG 2 cut(s) 576, 797
Bme18I GGWCC 1 cut(s) 466
BmgT120I GGNCC 3 cut(s) 466, 514, 793
BmiI GGNNCC 5 cut(s) 177, 424, 468, 515, 580
BmrFI CCNGG 2 cut(s) 576, 797
BmsI GCATC 1 cut(s) 827
Bsa29I ATCGAT 1 cut(s) 897
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 604, 684, 757
Bsc4I CCNNNNNNNGG 2 cut(s) 476, 679
Bse1I ACTGG 1 cut(s) 792
Bse21I CCTNAGG 1 cut(s) 462
Bse3DI GCAATG 1 cut(s) 58
BseBI CCWGG 2 cut(s) 576, 797
BseCI ATCGAT 1 cut(s) 897
BseDI CCNNGG 3 cut(s) 604, 684, 757
BseLI CCNNNNNNNGG 2 cut(s) 476, 679
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 453, 726
BseNI ACTGG 1 cut(s) 792
BseRI GAGGAG 1 cut(s) 593
BseSI GKGCMC 1 cut(s) 715
BseXI GCAGC 2 cut(s) 500, 900
Bsh1236I CGCG 1 cut(s) 717
BshFI GGCC 4 cut(s) 516, 609, 683, 795
BshNI GGYRCC 2 cut(s) 175, 578
BshVI ATCGAT 1 cut(s) 897
BsiHKAI GWGCWC 2 cut(s) 306, 715
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 476, 679
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 4 cut(s) 516, 609, 683, 795
Bsp1286I GDGCHC 3 cut(s) 306, 427, 715
Bsp143I GATC 7 cut(s) 51, 331, 531, 636, 738, 894, 898
BspACI CCGC 1 cut(s) 676
BspANI GGCC 4 cut(s) 516, 609, 683, 795
BspCNI CTCAG 2 cut(s) 454, 727
BspDI ATCGAT 1 cut(s) 897
BspFNI CGCG 1 cut(s) 717
BspLI GGNNCC 5 cut(s) 177, 424, 468, 515, 580
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 2 cut(s) 175, 578
BsrDI GCAATG 1 cut(s) 58
BsrI ACTGG 1 cut(s) 792
BssECI CCNNGG 3 cut(s) 604, 684, 757
BssMI GATC 7 cut(s) 51, 331, 531, 636, 738, 894, 898
BssNI GRCGYC 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 684
Bst2UI CCWGG 2 cut(s) 576, 797
Bst4CI ACNGT 3 cut(s) 670, 748, 870
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 518, 715
BstDEI CTNAG 2 cut(s) 462, 735
BstDSI CCRYGG 1 cut(s) 757
BstFNI CGCG 1 cut(s) 717
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 2 cut(s) 178, 444
BstKTI GATC 7 cut(s) 54, 334, 534, 639, 741, 897, 901
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 7 cut(s) 51, 331, 531, 636, 738, 894, 898
BstMWI GCNNNNNNNGC 3 cut(s) 497, 806, 815
BstNI CCWGG 2 cut(s) 576, 797
BstNSI RCATGY 3 cut(s) 212, 454, 574
BstSCI CCNGG 2 cut(s) 574, 795
BstSLI GKGCMC 1 cut(s) 715
BstUI CGCG 1 cut(s) 717
BstV1I GCAGC 2 cut(s) 500, 900
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
Bsu15I ATCGAT 1 cut(s) 897
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 4 cut(s) 516, 609, 683, 795
BsuTUI ATCGAT 1 cut(s) 897
BtgI CCRYGG 1 cut(s) 757
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 4 cut(s) 231, 491, 765, 866
Cac8I GCNNGC 2 cut(s) 518, 715
CaiI CAGNNNCTG 1 cut(s) 851
CfoI GCGC 2 cut(s) 178, 444
Cfr13I GGNCC 3 cut(s) 466, 514, 793
ClaI ATCGAT 1 cut(s) 897
CseI GACGC 1 cut(s) 706
CviAII CATG 6 cut(s) 172, 194, 209, 451, 571, 634
DdeI CTNAG 2 cut(s) 462, 735
DinI GGCGCC 1 cut(s) 177
DpnI GATC 7 cut(s) 53, 333, 533, 638, 740, 896, 900
DpnII GATC 7 cut(s) 51, 331, 531, 636, 738, 894, 898
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 466
Eco81I CCTNAGG 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 466
EcoRII CCWGG 2 cut(s) 574, 795
EcoT14I CCWWGG 1 cut(s) 684
EcoT38I GRGCYC 1 cut(s) 427
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 684
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 6 cut(s) 175, 197, 212, 454, 574, 637
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 1 cut(s) 452
FatI CATG 6 cut(s) 171, 193, 208, 450, 570, 633
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 489, 889
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 2 cut(s) 489, 889
FspBI CTAG 2 cut(s) 221, 476
GlaI GCGC 2 cut(s) 177, 443
GluI GCNGC 2 cut(s) 489, 889
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 4 cut(s) 516, 609, 683, 795
HgaI GACGC 1 cut(s) 706
HhaI GCGC 2 cut(s) 178, 444
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 6 cut(s) 175, 197, 212, 454, 574, 637
Hin6I GCGC 2 cut(s) 176, 442
HinP1I GCGC 2 cut(s) 176, 442
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 5 cut(s) 34, 190, 288, 388, 762
HphI GGTGA 2 cut(s) 283, 526
Hpy166II GTNNAC 3 cut(s) 253, 568, 713
Hpy188III TCNNGA 4 cut(s) 272, 351, 742, 845
Hpy8I GTNNAC 3 cut(s) 253, 568, 713
HpyCH4III ACNGT 3 cut(s) 670, 748, 870
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 5 cut(s) 8, 236, 552, 713, 888
HpyF10VI GCNNNNNNNGC 3 cut(s) 497, 806, 815
HpyF3I CTNAG 2 cut(s) 462, 735
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 6 cut(s) 175, 197, 212, 454, 574, 637
HspAI GCGC 2 cut(s) 176, 442
KasI GGCGCC 1 cut(s) 175
Kzo9I GATC 7 cut(s) 51, 331, 531, 636, 738, 894, 898
LmnI GCTCC 3 cut(s) 422, 606, 815
Lsp1109I GCAGC 2 cut(s) 500, 900
LweI GCATC 1 cut(s) 827
MaeI CTAG 2 cut(s) 221, 476
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 4 cut(s) 289, 365, 622, 864
MalI GATC 7 cut(s) 53, 333, 533, 638, 740, 896, 900
MboI GATC 7 cut(s) 51, 331, 531, 636, 738, 894, 898
MboII GAAGA 2 cut(s) 43, 395
MfeI CAATTG 1 cut(s) 590
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 3 cut(s) 306, 427, 715
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 3 cut(s) 590, 855, 876
MluI ACGCGT 1 cut(s) 715
MluNI TGGCCA 1 cut(s) 683
Mly113I GGCGCC 1 cut(s) 176
MlyI GAGTC 2 cut(s) 297, 756
MnlI CCTC 8 cut(s) 213, 252, 457, 551, 614, 683, 700, 855
Mox20I TGGCCA 1 cut(s) 683
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 683
MseI TTAA 5 cut(s) 11, 161, 186, 317, 612
MslI CAYNNNNRTG 2 cut(s) 746, 788
Msp20I TGGCCA 1 cut(s) 683
MspR9I CCNGG 2 cut(s) 576, 797
MunI CAATTG 1 cut(s) 590
MvaI CCWGG 2 cut(s) 576, 797
MvnI CGCG 1 cut(s) 717
MwoI GCNNNNNNNGC 3 cut(s) 497, 806, 815
NarI GGCGCC 1 cut(s) 176
NdeII GATC 7 cut(s) 51, 331, 531, 636, 738, 894, 898
NlaIII CATG 6 cut(s) 175, 197, 212, 454, 574, 637
NlaIV GGNNCC 5 cut(s) 177, 424, 468, 515, 580
NmeAIII GCCGAG 1 cut(s) 585
NmuCI GTSAC 2 cut(s) 289, 864
NspI RCATGY 3 cut(s) 212, 454, 574
OliI CACNNNNGTG 1 cut(s) 746
PciI ACATGT 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 3 cut(s) 34, 190, 388
PkrI GCNGC 2 cut(s) 490, 890
PleI GAGTC 2 cut(s) 296, 756
PluTI GGCGCC 1 cut(s) 179
PpsI GAGTC 2 cut(s) 296, 756
PpuMI RGGWCCY 1 cut(s) 466
PscI ACATGT 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 2 cut(s) 574, 795
PspGI CCWGG 2 cut(s) 574, 795
PspN4I GGNNCC 5 cut(s) 177, 424, 468, 515, 580
PspPI GGNCC 3 cut(s) 466, 514, 793
PspPPI RGGWCCY 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 1 cut(s) 51
RseI CAYNNNNRTG 2 cut(s) 746, 788
SaqAI TTAA 5 cut(s) 11, 161, 186, 317, 612
SatI GCNGC 2 cut(s) 489, 889
Sau3AI GATC 7 cut(s) 51, 331, 531, 636, 738, 894, 898
Sau96I GGNCC 3 cut(s) 466, 514, 793
SchI GAGTC 2 cut(s) 297, 756
ScrFI CCNGG 2 cut(s) 576, 797
SduI GDGCHC 3 cut(s) 306, 427, 715
SfaNI GCATC 1 cut(s) 827
SfoI GGCGCC 1 cut(s) 177
SinI GGWCC 1 cut(s) 466
SmiMI CAYNNNNRTG 2 cut(s) 746, 788
Sse9I AATT 3 cut(s) 590, 855, 876
SsiI CCGC 1 cut(s) 676
SspDI GGCGCC 1 cut(s) 175
SspMI CTAG 2 cut(s) 221, 476
StyD4I CCNGG 2 cut(s) 574, 795
StyI CCWWGG 1 cut(s) 684
TaaI ACNGT 3 cut(s) 670, 748, 870
TaiI ACGT 1 cut(s) 252
TaqI TCGA 3 cut(s) 286, 435, 897
TasI AATT 3 cut(s) 590, 855, 876
TfiI GAWTC 3 cut(s) 34, 190, 388
Tru1I TTAA 5 cut(s) 11, 161, 186, 317, 612
Tru9I TTAA 5 cut(s) 11, 161, 186, 317, 612
TscAI CASTG 4 cut(s) 238, 498, 772, 873
TseFI GTSAC 2 cut(s) 289, 864
TseI GCWGC 2 cut(s) 488, 888
Tsp45I GTSAC 2 cut(s) 289, 864
TspDTI ATGAA 2 cut(s) 79, 160
TspGWI ACGGA 2 cut(s) 774, 828
TspRI CASTG 4 cut(s) 238, 498, 772, 873
VneI GTGCAC 1 cut(s) 711
VpaK11BI GGWCC 1 cut(s) 466
XceI RCATGY 3 cut(s) 212, 454, 574
XmiI GTMKAC 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 2 cut(s) 221, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.