Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023714.1

Orthogroup ID

OG0000409

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 486

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023714.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 485 bp

atggctaactgtgatgttgcactttcaggtgacaaatctatgatcaagaagcgttatatgtatttgactgaagaaattctcaaagagaatcccagcatgtgtgagtacatggccccttcacttgatgcaagacaagacatggtggtggttgaaattccaaagcttgggaaagaggcagctaccaaggccattaaggaatggggtcagcccaagtctaaaatcacccacttggtattttgtactactagtggtgtcgacatgcccggggctgattaccagctcactaagctcttgggcctccgcccgtccgtcaagcgtctcatgatgtaccagcaagggtgttttgccggaggcacggtgctccggttggccaaggacttggccgagaacaacaaaggtgcacgcgttcttgttgtttgctcagagatcactgccgtgactttccgtgggcctagcgacactcatctcgatagtcttgtgggcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0016210 GO:0016740 GO:0016746 GO:0016747 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

161

Amino Acids

17.68

Weight (kDa)

8.57

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13930
fragaria_vesca	FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica	MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica	Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis	pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis	RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata	RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora	Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa	Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha	Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana	Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	405
AciI	CCGC	1 cut(s)	301
AcoI	YGGCCR	2 cut(s)	369, 381
AcsI	RAATTY	2 cut(s)	75, 153
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	3 cut(s)	107, 241, 329
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	152
AhlI	ACTAGT	1 cut(s)	245
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	4 cut(s)	163, 179, 280, 289
AluI	AGCT	4 cut(s)	163, 179, 280, 289
Alw21I	GWGCWC	2 cut(s)	363, 403
Alw26I	GTCTC	1 cut(s)	323
Alw44I	GTGCAC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	7 cut(s)	111, 186, 295, 369, 381, 449, 481
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	2 cut(s)	75, 153
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	4 cut(s)	112, 295, 449, 481
AsuC2I	CCSGG	2 cut(s)	264, 265
AsuHPI	GGTGA	2 cut(s)	41, 214
AvaI	CYCGRG	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	363, 403
BbvI	GCAGC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	264, 265
BcoDI	GTCTC	1 cut(s)	323
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	246, 453
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	264, 265
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	4 cut(s)	112, 295, 449, 481
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	2 cut(s)	264, 265
BmsI	GCATC	1 cut(s)	115
BpuMI	CCSGG	2 cut(s)	264, 265
BsaJI	CCNNGG	5 cut(s)	183, 263, 264, 372, 445
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
BseDI	CCNNGG	5 cut(s)	183, 263, 264, 372, 445
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	7 cut(s)	113, 188, 297, 371, 383, 451, 483
BsiHKAI	GWGCWC	2 cut(s)	363, 403
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	264, 348, 364
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	323
BsmBI	CGTCTC	1 cut(s)	323
BsnI	GGCC	7 cut(s)	113, 188, 297, 371, 383, 451, 483
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	363, 403
Bsp143I	GATC	2 cut(s)	42, 426
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	7 cut(s)	113, 188, 297, 371, 383, 451, 483
BspCNI	CTCAG	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	114
BssECI	CCNNGG	5 cut(s)	183, 263, 264, 372, 445
BssMI	GATC	2 cut(s)	42, 426
BssT1I	CCWWGG	2 cut(s)	183, 372
Bst4CI	ACNGT	2 cut(s)	11, 358
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	285, 421
BstDSI	CCRYGG	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	405
BstKTI	GATC	2 cut(s)	45, 429
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	42, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 286
BstNSI	RCATGY	2 cut(s)	100, 262
BstSCI	CCNGG	2 cut(s)	262, 263
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	379
BsuRI	GGCC	7 cut(s)	113, 188, 297, 371, 383, 451, 483
BtgI	CCRYGG	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	403
CciI	TCATGA	1 cut(s)	321
Cfr13I	GGNCC	4 cut(s)	112, 295, 449, 481
Cfr9I	CCCGGG	1 cut(s)	263
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	3 cut(s)	106, 240, 328
CviAII	CATG	5 cut(s)	97, 109, 139, 259, 322
CviQI	GTAC	3 cut(s)	106, 240, 328
DdeI	CTNAG	2 cut(s)	285, 421
DpnI	GATC	2 cut(s)	44, 428
DpnII	GATC	2 cut(s)	42, 426
EaeI	YGGCCR	2 cut(s)	369, 381
EciI	GGCGGA	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	183, 372
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	2 cut(s)	183, 372
ErhI	CCWWGG	2 cut(s)	183, 372
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	5 cut(s)	100, 112, 142, 262, 325
FaiI	YATR	8 cut(s)	41, 57, 59, 98, 110, 140, 260, 323
FatI	CATG	5 cut(s)	96, 108, 138, 258, 321
FbaI	TGATCA	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	246, 453
GluI	GCNGC	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	96
HaeIII	GGCC	7 cut(s)	113, 188, 297, 371, 383, 451, 483
HapII	CCGG	3 cut(s)	264, 348, 364
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	5 cut(s)	100, 112, 142, 262, 325
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	264, 348, 364
HphI	GGTGA	2 cut(s)	41, 214
Hpy166II	GTNNAC	2 cut(s)	256, 401
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	3 cut(s)	46, 322, 467
Hpy8I	GTNNAC	2 cut(s)	256, 401
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	11, 358
HpyCH4V	TGCA	3 cut(s)	20, 128, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 286
HpyF3I	CTNAG	2 cut(s)	285, 421
Hsp92II	CATG	5 cut(s)	100, 112, 142, 262, 325
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	42, 426
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	7 cut(s)	12, 106, 277, 290, 344, 361, 377
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	246, 453
MaeIII	GTNAC	2 cut(s)	29, 436
MalI	GATC	2 cut(s)	44, 428
MboI	GATC	2 cut(s)	42, 426
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	363, 403
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	2 cut(s)	75, 153
MluI	ACGCGT	1 cut(s)	403
MluNI	TGGCCA	1 cut(s)	371
MnlI	CCTC	3 cut(s)	166, 308, 344
Mox20I	TGGCCA	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	2 cut(s)	143, 434
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	3 cut(s)	264, 348, 364
MspR9I	CCNGG	2 cut(s)	264, 265
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	185, 286
NciI	CCSGG	2 cut(s)	264, 265
NdeII	GATC	2 cut(s)	42, 426
NlaIII	CATG	5 cut(s)	100, 112, 142, 262, 325
NlaIV	GGNNCC	1 cut(s)	114
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	2 cut(s)	29, 436
NspI	RCATGY	2 cut(s)	100, 262
OliI	CACNNNNGTG	1 cut(s)	434
PagI	TCATGA	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	4 cut(s)	112, 295, 449, 481
RsaI	GTAC	3 cut(s)	107, 241, 329
RsaNI	GTAC	3 cut(s)	106, 240, 328
RseI	CAYNNNNRTG	2 cut(s)	143, 434
SalI	GTCGAC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	42, 426
Sau96I	GGNCC	4 cut(s)	112, 295, 449, 481
ScrFI	CCNGG	2 cut(s)	264, 265
SduI	GDGCHC	2 cut(s)	363, 403
SetI	ASST	6 cut(s)	31, 165, 181, 282, 291, 400
SfaNI	GCATC	1 cut(s)	115
SmaI	CCCGGG	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	143, 434
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	2 cut(s)	75, 153
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	2 cut(s)	246, 453
StyD4I	CCNGG	2 cut(s)	262, 263
StyI	CCWWGG	2 cut(s)	183, 372
TaaI	ACNGT	2 cut(s)	11, 358
TaqI	TCGA	2 cut(s)	255, 468
TasI	AATT	2 cut(s)	75, 153
TatI	WGTACW	2 cut(s)	105, 239
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	2 cut(s)	29, 436
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	2 cut(s)	29, 436
TspGWI	ACGGA	2 cut(s)	298, 434
TspMI	CCCGGG	1 cut(s)	263
TspRI	CASTG	1 cut(s)	436
Van91I	CCANNNNNTGG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	399
XapI	RAATTY	2 cut(s)	75, 153
XceI	RCATGY	2 cut(s)	100, 262
XmaI	CCCGGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	2 cut(s)	246, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.