RchiOBHm_Chr6g0297011

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000409
Physical Location & Seq
Forward (+)
58643684 .. 58644231
548 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26660

Sequence Viewer

Length: 402 bp
ATGGGGTTTGAGTATAATTACCTATCATCAGAAGTTCCAAAGTTGGTTGGTGGGAAAATCGAAGAGTGTTTGAGTAAAGGGTTTGAGGGCATTGGGGTTAATGGTGATTGGAACTCGTTGTTCTTTAGCGTTCATCCTGGGGGTCCTGCAATTCTGGACAAGGTTGAAGAAGAGCTGGGTTTGAAGGAGGGGAAGCTGAAGGCAACAAGGCATGTGCTGAGTGAGTTTGGGAATATGGGAGCTCCATCTGTGCTTTTTATTTTGGATGAGATAAGGAAGAAGTCAATGGAGGAAGCAAAAGCCACAACTGGTGAAGGTTTGGAATGGGGTGTGTTAATTGGGATCGGGCCAGGACTCACTGTGGAGACTGTTGTGCTCCGCAGTGCTCCCACTGCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

133

Amino Acids

14.24

Weight (kDa)

4.95

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_C PF02797 8 - 129 1.9e-46 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 379
AclWI GGATC 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 218
AgsI TTSAA 2 cut(s) 167, 184
AjnI CCWGG 2 cut(s) 136, 349
AluBI AGCT 3 cut(s) 175, 196, 242
AluI AGCT 3 cut(s) 175, 196, 242
Alw21I GWGCWC 3 cut(s) 244, 378, 388
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 350
AoxI GGCC 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 143, 347
AsuHPI GGTGA 2 cut(s) 116, 323
AvaII GGWCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 244
Bbv12I GWGCWC 3 cut(s) 244, 378, 388
BccI CCATC 1 cut(s) 253
BciT130I CCWGG 2 cut(s) 138, 351
BcoDI GTCTC 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 138, 351
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 143, 347
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 138, 351
BsaJI CCNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 2 cut(s) 138, 351
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 133, 271
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 175
BshFI GGCC 1 cut(s) 349
BsiHKAI GWGCWC 3 cut(s) 244, 378, 388
BsmAI GTCTC 1 cut(s) 359
BsnI GGCC 1 cut(s) 349
Bsp1286I GDGCHC 3 cut(s) 244, 378, 388
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 1 cut(s) 379
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 350
BspQI GCTCTTC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 138, 351
Bst4CI ACNGT 2 cut(s) 361, 370
Bst6I CTCTTC 2 cut(s) 57, 165
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 133, 271
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 2 cut(s) 138, 351
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 136, 349
BsuRI GGCC 1 cut(s) 349
BtsCI GGATG 2 cut(s) 133, 271
BtsI GCAGTG 2 cut(s) 388, 390
BtsIMutI CAGTG 3 cut(s) 357, 388, 390
Cfr13I GGNCC 2 cut(s) 143, 347
CviAII CATG 1 cut(s) 212
CviJI RGCY 5 cut(s) 175, 196, 242, 302, 349
CviKI_1 RGCY 5 cut(s) 175, 196, 242, 302, 349
DdeI CTNAG 1 cut(s) 218
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 57, 165
EarI CTCTTC 2 cut(s) 57, 165
Ecl136II GAGCTC 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 136, 349
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 1 cut(s) 215
FaiI YATR 3 cut(s) 15, 213, 236
FatI CATG 1 cut(s) 211
FokI GGATG 2 cut(s) 120, 278
FriOI GRGCYC 1 cut(s) 244
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 349
Hin1II CATG 1 cut(s) 215
HinfI GANTC 1 cut(s) 354
HphI GGTGA 2 cut(s) 116, 323
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 178, 193, 308
HpyCH4III ACNGT 2 cut(s) 361, 370
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 1 cut(s) 342
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 4 cut(s) 239, 247, 381, 391
LpnPI CCDG 8 cut(s) 123, 140, 150, 159, 161, 294, 336, 363
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 4 cut(s) 74, 179, 182, 289
MhlI GDGCHC 3 cut(s) 244, 378, 388
MluCI AATT 3 cut(s) 16, 150, 336
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 3 cut(s) 79, 181, 283
MseI TTAA 2 cut(s) 99, 335
MspR9I CCNGG 2 cut(s) 138, 351
MvaI CCWGG 2 cut(s) 138, 351
MwoI GCNNNNNNNGC 1 cut(s) 392
NdeII GATC 1 cut(s) 342
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 144
NspI RCATGY 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 165
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 136, 349
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 2 cut(s) 136, 349
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 2 cut(s) 143, 347
PspPPI RGGWCCY 1 cut(s) 143
SacI GAGCTC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 99, 335
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 2 cut(s) 143, 347
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 138, 351
SduI GDGCHC 3 cut(s) 244, 378, 388
SetI ASST 6 cut(s) 24, 165, 177, 198, 244, 319
SinI GGWCC 1 cut(s) 143
Sse9I AATT 3 cut(s) 16, 150, 336
SsiI CCGC 1 cut(s) 379
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 136, 349
TaaI ACNGT 2 cut(s) 361, 370
TaqI TCGA 1 cut(s) 60
TasI AATT 3 cut(s) 16, 150, 336
Tru1I TTAA 2 cut(s) 99, 335
Tru9I TTAA 2 cut(s) 99, 335
TscAI CASTG 3 cut(s) 364, 388, 397
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 3 cut(s) 364, 388, 397
VpaK11BI GGWCC 1 cut(s) 143
XceI RCATGY 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.