Rroxscaffold_4G00330990

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000409
Physical Location & Seq
Forward (+)
64790330 .. 64791811
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330990.1

Sequence Viewer

Length: 741 bp
ATGGTGACCGTCGAGGAAGTCCGCAAGGCTCAACGTGCTGAAGGTCCGGCCACCGTCTTGGCCATCGGGACAGCCACTCCTCCCAACTGTATTGACCAGAGCACATACCCTGACTACTATTTTCGTATCACCAACAGCGAGCACAAGGCTGAGCTCAAGGAGAAGTTCCAGCGCATGTGTGACAAATCTATGATCAAGAAGCGTTACATGTATTTGACTGAAGAAATTCTCAAAGAGAATCCTAGTATGTGTGAGTACATGGCCCCTTCACTTGATGCAAGACAAGACATGGTGGTTGTTGAAATTCCAAAGCTTGGAAAAGAGGCCGCCACCAAGGCCATTAAGGAATGGGTTGGGCTCACATTTCACCTCCTCAAAGATGTGCCTGGGCTGATTTCGAAGAACATTGAGAAGAGCCTCAATGAGGCCTTCAAACCTTTGAACATCACGGACTGGAACTCACTTTTTTGGATTGCACACCCGGGTGGCCCTGCAATTTTGGACCAAGTAGAGGCTAAATTGGGCCTGAAGCCCGAAAAGCTAGAAGCCACAAGGCATATACTATCCGAGTACGGCAACATGTCTAGTGCTTGTGTGTTGTTCATTTTGGACGAGGTGAGGAGGAAGTCTGCAGCTAATGGGCACAAGACCACCGGAGAAGGCTTGGAGTGGGGTGTTCTATTTGGGTTTGGGCCTGGGCTCACCGTCGAGACTGTTGTGCTTCACAGTGTGGCTGCTTAA

Protein Analysis

246

Amino Acids

27.44

Weight (kDa)

6.33

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 5 - 117 1.2e-51 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C PF02797 114 - 244 9.1e-61 Chalcone and stilbene synthases, C-terminal domain
ACP_syn_III_C PF08541 158 - 241 1.3e-06 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 314
AciI CCGC 2 cut(s) 22, 327
AcoI YGGCCR 2 cut(s) 48, 60
AcsI RAATTY 2 cut(s) 225, 303
AcuI CTGAAG 3 cut(s) 60, 240, 548
AdeI CACNNNGTG 1 cut(s) 730
AfaI GTAC 2 cut(s) 257, 572
AfiI CCNNNNNNNGG 3 cut(s) 314, 424, 511
AflIII ACRYGT 2 cut(s) 207, 579
AgsI TTSAA 3 cut(s) 302, 433, 442
AjnI CCWGG 2 cut(s) 385, 694
AleI CACNNNNGTG 1 cut(s) 483
AluBI AGCT 4 cut(s) 154, 313, 541, 635
AluI AGCT 4 cut(s) 154, 313, 541, 635
Alw21I GWGCWC 3 cut(s) 104, 144, 156
Alw26I GTCTC 1 cut(s) 704
Ama87I CYCGRG 1 cut(s) 481
AoxI GGCC 9 cut(s) 48, 60, 261, 324, 336, 426, 487, 523, 692
ApeKI GCWGC 2 cut(s) 632, 734
ApoI RAATTY 2 cut(s) 225, 303
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 6 cut(s) 44, 262, 488, 502, 523, 692
AsuC2I CCSGG 2 cut(s) 482, 483
AsuHPI GGTGA 5 cut(s) 16, 121, 359, 628, 694
AsuII TTCGAA 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 481
AvaII GGWCC 2 cut(s) 44, 502
BaeGI GKGCMC 1 cut(s) 645
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 3 cut(s) 156, 360, 702
Bbv12I GWGCWC 3 cut(s) 104, 144, 156
BbvI GCAGC 2 cut(s) 644, 721
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 589
BciT130I CCWGG 2 cut(s) 387, 696
BclI TGATCA 1 cut(s) 192
BcnI CCSGG 2 cut(s) 482, 483
BcoDI GTCTC 1 cut(s) 704
BfaI CTAG 3 cut(s) 243, 542, 585
BfmI CTRYAG 1 cut(s) 630
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 3 cut(s) 327, 633, 735
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 3 cut(s) 328, 634, 736
Bme1390I CCNGG 4 cut(s) 387, 482, 483, 696
Bme18I GGWCC 2 cut(s) 44, 502
BmeT110I CYCGRG 1 cut(s) 481
BmgT120I GGNCC 6 cut(s) 44, 262, 488, 502, 523, 692
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 4 cut(s) 387, 482, 483, 696
BmsI GCATC 1 cut(s) 265
Bpu1102I GCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 482, 483
BsaJI CCNNGG 4 cut(s) 333, 386, 481, 695
BsaWI WCCGGW 1 cut(s) 653
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 424, 511
Bse1I ACTGG 1 cut(s) 458
BseBI CCWGG 2 cut(s) 387, 696
BseDI CCNNGG 4 cut(s) 333, 386, 481, 695
BseLI CCNNNNNNNGG 3 cut(s) 314, 424, 511
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 3 cut(s) 69, 362, 634
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 2 cut(s) 644, 721
BshFI GGCC 9 cut(s) 50, 62, 263, 326, 338, 428, 489, 525, 694
BsiHKAI GWGCWC 3 cut(s) 104, 144, 156
BsiHKCI CYCGRG 1 cut(s) 481
BsiSI CCGG 3 cut(s) 47, 482, 654
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 314, 424, 511
BsmAI GTCTC 1 cut(s) 704
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 9 cut(s) 50, 62, 263, 326, 338, 428, 489, 525, 694
BsoBI CYCGRG 1 cut(s) 481
Bsp119I TTCGAA 1 cut(s) 398
Bsp1286I GDGCHC 6 cut(s) 104, 144, 156, 360, 645, 702
Bsp143I GATC 1 cut(s) 192
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 2 cut(s) 22, 327
BspANI GGCC 9 cut(s) 50, 62, 263, 326, 338, 428, 489, 525, 694
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 634
BspQI GCTCTTC 1 cut(s) 407
BspT104I TTCGAA 1 cut(s) 398
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 4 cut(s) 333, 386, 481, 695
BssMI GATC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 387, 696
Bst4CI ACNGT 6 cut(s) 10, 55, 89, 706, 715, 728
Bst6I CTCTTC 1 cut(s) 407
BstBI TTCGAA 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 4
BstENI CCTNNNNNAGG 1 cut(s) 422
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 3 cut(s) 35, 335, 538
BstNI CCWGG 2 cut(s) 387, 696
BstNSI RCATGY 3 cut(s) 178, 211, 583
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 4 cut(s) 385, 480, 481, 694
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 644, 721
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 9 cut(s) 50, 62, 263, 326, 338, 428, 489, 525, 694
BtsIMutI CAGTG 1 cut(s) 733
Cac8I GCNNGC 1 cut(s) 140
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 6 cut(s) 44, 262, 488, 502, 523, 692
Cfr9I CCCGGG 1 cut(s) 481
Csp6I GTAC 2 cut(s) 256, 571
CviAII CATG 5 cut(s) 175, 208, 259, 289, 580
CviQI GTAC 2 cut(s) 256, 571
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DraIII CACNNNGTG 1 cut(s) 730
EaeI YGGCCR 2 cut(s) 48, 60
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 428
Eco24I GRGCYC 3 cut(s) 156, 360, 702
Eco47I GGWCC 2 cut(s) 44, 502
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 3 cut(s) 60, 240, 548
Eco88I CYCGRG 1 cut(s) 481
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 385, 694
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 3 cut(s) 156, 360, 702
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 5 cut(s) 178, 211, 262, 292, 583
FaqI GGGAC 1 cut(s) 82
FatI CATG 5 cut(s) 174, 207, 258, 288, 579
FbaI TGATCA 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 327, 633, 735
FriOI GRGCYC 3 cut(s) 156, 360, 702
Fsp4HI GCNGC 3 cut(s) 327, 633, 735
FspBI CTAG 3 cut(s) 243, 542, 585
GlaI GCGC 1 cut(s) 173
GluI GCNGC 3 cut(s) 327, 633, 735
HaeIII GGCC 9 cut(s) 50, 62, 263, 326, 338, 428, 489, 525, 694
HapII CCGG 3 cut(s) 47, 482, 654
HhaI GCGC 1 cut(s) 174
Hin1II CATG 5 cut(s) 178, 211, 262, 292, 583
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 238
HpaII CCGG 3 cut(s) 47, 482, 654
HphI GGTGA 5 cut(s) 16, 121, 359, 628, 694
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 3 cut(s) 67, 196, 709
Hpy99I CGWCG 2 cut(s) 14, 710
HpyAV CCTTC 4 cut(s) 35, 276, 439, 653
HpyCH4III ACNGT 6 cut(s) 10, 55, 89, 706, 715, 728
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 278, 476, 494, 632
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 335, 538
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 5 cut(s) 178, 211, 262, 292, 583
HspAI GCGC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 1 cut(s) 192
LguI GCTCTTC 1 cut(s) 407
Lsp1109I GCAGC 2 cut(s) 644, 721
LweI GCATC 1 cut(s) 265
MaeI CTAG 3 cut(s) 243, 542, 585
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 3 cut(s) 4, 179, 203
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 3 cut(s) 233, 412, 424
MhlI GDGCHC 6 cut(s) 104, 144, 156, 360, 645, 702
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 4 cut(s) 225, 303, 495, 518
MluNI TGGCCA 1 cut(s) 62
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 1 cut(s) 62
MseI TTAA 2 cut(s) 342, 739
MslI CAYNNNNRTG 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 3 cut(s) 47, 482, 654
MspR9I CCNGG 4 cut(s) 387, 482, 483, 696
MvaI CCWGG 2 cut(s) 387, 696
MwoI GCNNNNNNNGC 3 cut(s) 35, 335, 538
NciI CCSGG 2 cut(s) 482, 483
NdeII GATC 1 cut(s) 192
NlaIII CATG 5 cut(s) 178, 211, 262, 292, 583
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 2 cut(s) 4, 179
NspI RCATGY 3 cut(s) 178, 211, 583
NspV TTCGAA 1 cut(s) 398
OliI CACNNNNGTG 1 cut(s) 483
PceI AGGCCT 1 cut(s) 428
PciI ACATGT 2 cut(s) 207, 579
PciSI GCTCTTC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 3 cut(s) 328, 634, 736
PscI ACATGT 2 cut(s) 207, 579
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 385, 694
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 2 cut(s) 385, 694
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 6 cut(s) 44, 262, 488, 502, 523, 692
PstI CTGCAG 1 cut(s) 634
RsaI GTAC 2 cut(s) 257, 572
RsaNI GTAC 2 cut(s) 256, 571
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 2 cut(s) 342, 739
SatI GCNGC 3 cut(s) 327, 633, 735
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 6 cut(s) 44, 262, 488, 502, 523, 692
ScrFI CCNGG 4 cut(s) 387, 482, 483, 696
SduI GDGCHC 6 cut(s) 104, 144, 156, 360, 645, 702
SetI ASST 9 cut(s) 37, 46, 156, 315, 372, 439, 543, 618, 637
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 398
SinI GGWCC 2 cut(s) 44, 502
SmaI CCCGGG 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 4 cut(s) 225, 303, 495, 518
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 2 cut(s) 22, 327
SspMI CTAG 3 cut(s) 243, 542, 585
SstI GAGCTC 1 cut(s) 156
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 4 cut(s) 385, 480, 481, 694
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 6 cut(s) 10, 55, 89, 706, 715, 728
TaiI ACGT 1 cut(s) 37
TaqI TCGA 3 cut(s) 12, 398, 708
TasI AATT 4 cut(s) 225, 303, 495, 518
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 2 cut(s) 342, 739
Tru9I TTAA 2 cut(s) 342, 739
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 2 cut(s) 4, 179
TseI GCWGC 2 cut(s) 632, 734
Tsp45I GTSAC 2 cut(s) 4, 179
TspDTI ATGAA 1 cut(s) 592
TspGWI ACGGA 1 cut(s) 464
TspMI CCCGGG 1 cut(s) 481
TspRI CASTG 1 cut(s) 733
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 44, 502
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 2 cut(s) 225, 303
XceI RCATGY 3 cut(s) 178, 211, 583
XmaI CCCGGG 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 3 cut(s) 243, 542, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.