Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000409

Physical Location & Seq

Genomic Coordinates Reverse (-)

3171693 .. 3172566

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0022100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCTCACTTCTTCAGCCCTCCTCCCAACTCCTGAAACTGATGTGGACTTTTGCGGCATTGGGCTCGCTCTTGGTTTCTCAAAGATGAAGATGTACTTTTCGGGGCATGGGAAGCTTAAGTTTACGAAGAACAGGATCACGGAGCTTACTGCAATGCCTAAAGACGCTAATTTTATCCATGTGGATATATATGATGTTACTGAGCCTAAGCCTAAGCCTGCAACCAGGTCAGTCATGGAGAATGAGTTGGAGAAAGTGAGACTTGATAGATCATGCGGTATTTGCATGGACGTATTTGAGAAAGGTGTTATAGCTATTCGCTTGCCCTGCTTACACATTTTTCATGGAAATTGCATTTTCCGGTGGCTGGAGACTGATCATAAGTGTCCTTTGTGCCGAAATCCAATGCCTCACGATAATGCAGATCAGTTTTCCTATGAACCCGACGACACTAATCCTTCGGTGAACGTATACCAGCATTCTTATTATACTGAAATTGAGTCAAAAAGATGCACTCCAGCACCATCATCCATGCTTCACATCCGATTCAATCTCTACAAGTCAAACCAAGATGGTTTATTGCGGGAGGACCGTGAAGTTTCACGCACATCTATTGATGCTGGACAAATCTACCTCGAAACGGAGCCACAATCACTAATAATTCCTAGTCGTTGGGAGCTGCAGCCAACTACCCAAGTGCTTAGAAGCATGAGTGTTCCGCGGCATGAGCAGCCACCCATTGTTGCCAAAACATTTGAGACGGTTGCCAGCAACAATGCTGATGGTGGTGGCGGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0016210 GO:0016740 GO:0016746 GO:0016747 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

266

Amino Acids

30.08

Weight (kDa)

6.0

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	91 - 133	6.9e-14	Ring finger domain
zf-C3HC4_2	PF13923	92 - 132	2.4e-11	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	92 - 132	1.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	92 - 133	8.4e-07	RING-H2 zinc finger domain
zf-RING_11	PF17123	92 - 119	7e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13930
fragaria_vesca	FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica	MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica	Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis	pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis	RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata	RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora	Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa	Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha	Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana	Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	471
AccII	CGCG	1 cut(s)	721
AciI	CCGC	6 cut(s)	54, 276, 583, 719, 721, 792
AclWI	GGATC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	367, 640
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	4 cut(s)	115, 145, 314, 679
AluI	AGCT	4 cut(s)	115, 145, 314, 679
Alw26I	GTCTC	3 cut(s)	253, 365, 752
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	3 cut(s)	679, 682, 730
AspS9I	GGNCC	1 cut(s)	589
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	666, 694, 742
BccI	CCATC	3 cut(s)	532, 566, 776
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	3 cut(s)	253, 365, 752
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	680
BfrI	CTTAAG	1 cut(s)	116
BisI	GCNGC	5 cut(s)	55, 680, 683, 722, 731
BlsI	GCNGC	5 cut(s)	56, 681, 684, 723, 732
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	2 cut(s)	500, 607
BpmI	CTGGAG	2 cut(s)	389, 501
Bpu10I	CCTNAGC	2 cut(s)	207, 213
BsaJI	CCNNGG	1 cut(s)	719
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 640
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	719
BseGI	GGATG	2 cut(s)	527, 540
BseLI	CCNNNNNNNGG	2 cut(s)	367, 640
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	3 cut(s)	666, 694, 742
Bsh1236I	CGCG	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	367, 640
BsmAI	GTCTC	3 cut(s)	253, 365, 752
BsmBI	CGTCTC	1 cut(s)	752
BsmI	GAATGC	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	4 cut(s)	135, 269, 376, 424
BspACI	CCGC	6 cut(s)	54, 276, 583, 719, 721, 792
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	721
BspLI	GGNNCC	1 cut(s)	645
BspMAI	CTGCAG	1 cut(s)	684
BspPI	GGATC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	719
BssMI	GATC	4 cut(s)	135, 269, 376, 424
BssNAI	GTATAC	1 cut(s)	472
Bst1107I	GTATAC	1 cut(s)	472
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	593, 763
BstAFI	CTTAAG	1 cut(s)	116
BstC8I	GCNNGC	4 cut(s)	66, 219, 323, 769
BstDEI	CTNAG	4 cut(s)	201, 207, 213, 701
BstDSI	CCRYGG	1 cut(s)	719
BstF5I	GGATG	2 cut(s)	527, 540
BstFNI	CGCG	1 cut(s)	721
BstKTI	GATC	4 cut(s)	138, 272, 379, 427
BstMAI	GTCTC	3 cut(s)	253, 365, 752
BstMBI	GATC	4 cut(s)	135, 269, 376, 424
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 282, 327, 727, 730
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	680
BstUI	CGCG	1 cut(s)	721
BstV1I	GCAGC	3 cut(s)	666, 694, 742
BstZ17I	GTATAC	1 cut(s)	472
BtgI	CCRYGG	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	527, 540
Cac8I	GCNNGC	4 cut(s)	66, 219, 323, 769
Cfr13I	GGNCC	1 cut(s)	589
Cfr42I	CCGCGG	1 cut(s)	722
CseI	GACGC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	9 cut(s)	107, 179, 235, 273, 286, 344, 532, 709, 725
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	4 cut(s)	201, 207, 213, 701
DpnI	GATC	4 cut(s)	137, 271, 378, 426
DpnII	GATC	4 cut(s)	135, 269, 376, 424
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	752
FaeI	CATG	9 cut(s)	110, 182, 238, 276, 289, 347, 535, 712, 728
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 246, 278
FatI	CATG	9 cut(s)	106, 178, 234, 272, 285, 343, 531, 708, 724
FauI	CCCGC	1 cut(s)	576
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	5 cut(s)	55, 680, 683, 722, 731
FokI	GGATG	2 cut(s)	514, 527
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	5 cut(s)	55, 680, 683, 722, 731
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	5 cut(s)	55, 680, 683, 722, 731
GsuI	CTGGAG	2 cut(s)	389, 501
HapII	CCGG	1 cut(s)	361
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	9 cut(s)	110, 182, 238, 276, 289, 347, 535, 712, 728
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	500, 546
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	4 cut(s)	46, 123, 466, 472
Hpy188I	TCNGA	1 cut(s)	545
Hpy188III	TCNNGA	2 cut(s)	32, 413
Hpy8I	GTNNAC	4 cut(s)	46, 123, 466, 472
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	1 cut(s)	468
HpyCH4III	ACNGT	2 cut(s)	593, 763
HpyCH4IV	ACGT	2 cut(s)	291, 468
HpyCH4V	TGCA	7 cut(s)	152, 221, 285, 354, 422, 513, 682
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 282, 327, 727, 730
HpyF3I	CTNAG	4 cut(s)	201, 207, 213, 701
HpySE526I	ACGT	2 cut(s)	291, 468
Hsp92II	CATG	9 cut(s)	110, 182, 238, 276, 289, 347, 535, 712, 728
Ksp22I	TGATCA	1 cut(s)	376
KspI	CCGCGG	1 cut(s)	722
Kzo9I	GATC	4 cut(s)	135, 269, 376, 424
LmnI	GCTCC	3 cut(s)	142, 643, 676
Lsp1109I	GCAGC	3 cut(s)	666, 694, 742
LweI	GCATC	2 cut(s)	500, 607
MabI	ACCWGGT	1 cut(s)	224
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	2 cut(s)	291, 468
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	4 cut(s)	137, 271, 378, 426
MboI	GATC	4 cut(s)	135, 269, 376, 424
MboII	GAAGA	3 cut(s)	3, 100, 139
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	169, 349, 495, 660
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	29, 32, 420, 580, 644
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	721
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	226
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	721
MwoI	GCNNNNNNNGC	5 cut(s)	112, 282, 327, 727, 730
NdeII	GATC	4 cut(s)	135, 269, 376, 424
NlaIII	CATG	9 cut(s)	110, 182, 238, 276, 289, 347, 535, 712, 728
NlaIV	GGNNCC	1 cut(s)	645
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	546
PkrI	GCNGC	5 cut(s)	56, 681, 684, 723, 732
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	684
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	417
SacII	CCGCGG	1 cut(s)	722
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	5 cut(s)	55, 680, 683, 722, 731
Sau3AI	GATC	4 cut(s)	135, 269, 376, 424
Sau96I	GGNCC	1 cut(s)	589
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	9 cut(s)	117, 147, 230, 294, 307, 316, 471, 636, 681
SexAI	ACCWGGT	1 cut(s)	224
SfaNI	GCATC	2 cut(s)	500, 607
SfcI	CTRYAG	1 cut(s)	680
Sfr303I	CCGCGG	1 cut(s)	722
SgrBI	CCGCGG	1 cut(s)	722
SinI	GGWCC	1 cut(s)	589
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	4 cut(s)	169, 349, 495, 660
SsiI	CCGC	6 cut(s)	54, 276, 583, 719, 721, 792
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	593, 763
TaiI	ACGT	2 cut(s)	294, 471
TaqI	TCGA	1 cut(s)	636
TasI	AATT	4 cut(s)	169, 349, 495, 660
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	2 cut(s)	57, 724
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseI	GCWGC	3 cut(s)	679, 682, 730
TspDTI	ATGAA	3 cut(s)	101, 332, 453
TspGWI	ACGGA	2 cut(s)	155, 656
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.