RchiOBHm_Chr6g0296951

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000409
Physical Location & Seq
Forward (+)
58611134 .. 58613056
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26655

Sequence Viewer

Length: 1119 bp
ATGGAGTCTCTGGCTAAACAGGCAAAGGTTCCAGCCACAATACTAGCCATTGGGACTGCAAATCCAATAAGCTGTTATTACCAAGAAGACTATCCCGATTTCTTGTTCAAAGTCACCAAAAGCGAGCACAAGACCGAATTAAAAGACAAGTTCAAACGCATATGTGAAAAGTCGATGGTAAAGAAGCGATATCTGGGCGTCACAGAAGAGAGTCTAAAAGCCAACCCTAATATATGCAGCTACAAGGCTCCCTCACTCGACGCACGTCAAGACTTACTAATTCACGAGGTCCCCAAACTCGGTAAAGAAGCGGCGTTAAAGGCCATCAGAGAATGGGGCCAACCCATTTCAAGCCTCACCCACCTCATCTTCTGCACAGCTTCCTGCGTCGACATGCCCGGTGCCGACTTTCAGCTCATCAAGCTCCTCGGCCTAAATCCATCTATCAACCGGTTCATGATCTACCAGCAAGGCTGCTTTGCTGGTGGGACGGTGCTACGGATTGCTAAAGACGTGGCCGAGAACAATGCCGGAGCTCGTGTTCTGATCGTCCACTTGGATGTTTTGGTCGGACAGGCTCTGTTTTCGGACGGTGCGGCGGCTTTGATTGTTGGGGCCAATCCGGACCCCAAAAGTGAACGTCAACTGTTCAATATCATGTCTGTTAGATTGACTATTATCCCAAACTCGGAGCATGGAGTTGTGGCACATTTGCGTGAGATGGGGTTTGAGTATTACCTATCATCAGAAGTTCCAAAGTTGGTTGGTGGGAAAATCGAAGAGTGTTTGAATAAAGGGTTTGAGGGCATTGGGGTTAATGGTGATTGGAACTCGTTGTTCTTTAGCGTTCATCCTGGGGGTCCTGCAATTCTGGACAAGGTTGAAGAAGAGCTGGGTTTGAAGGAGGGGAAGCTGAAGGCAACAAGGCATGTGCTGAGTGAGTTTGGGAATATGGGAGCTCCATCTGTGCTTTTTATTTTGGATGAGATAAGGAAGAAGTCAATGGAGGAAGCAAAAGCCACAACTGGTGAAGGTTTGGAATGGGGTGTGTTAATTGGGATCGGGCCAGGACTCACTGTGGAGACTGTTGTGCTCCGCAGTGCTCCCACTGCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

372

Amino Acids

40.55

Weight (kDa)

6.48

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 5 - 208 4.2e-86 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C PF02797 221 - 368 7.5e-52 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 390
AccIII TCCGGA 1 cut(s) 622
AciI CCGC 4 cut(s) 311, 596, 599, 1096
AclWI GGATC 1 cut(s) 1067
AcoI YGGCCR 1 cut(s) 516
AcuI CTGAAG 1 cut(s) 935
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 299, 688
AgeI ACCGGT 1 cut(s) 450
AgsI TTSAA 7 cut(s) 109, 154, 351, 652, 790, 884, 901
AjiI CACGTC 2 cut(s) 266, 514
AjnI CCWGG 2 cut(s) 853, 1066
AloI GAACNNNNNNTCC 2 cut(s) 525, 557
AluBI AGCT 9 cut(s) 72, 240, 380, 415, 424, 536, 892, 913, 959
AluI AGCT 9 cut(s) 72, 240, 380, 415, 424, 536, 892, 913, 959
Alw21I GWGCWC 5 cut(s) 129, 538, 961, 1095, 1105
Alw26I GTCTC 2 cut(s) 12, 1076
AlwI GGATC 1 cut(s) 1067
AlwNI CAGNNNCTG 1 cut(s) 580
Aor13HI TCCGGA 1 cut(s) 622
AoxI GGCC 6 cut(s) 321, 337, 430, 516, 615, 1064
ApeKI GCWGC 2 cut(s) 237, 474
AsiGI ACCGGT 1 cut(s) 450
AspS9I GGNCC 6 cut(s) 289, 337, 615, 625, 860, 1064
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 4 cut(s) 106, 349, 833, 1040
AvaII GGWCC 3 cut(s) 289, 625, 860
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 2 cut(s) 538, 961
BauI CACGAG 2 cut(s) 284, 537
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 5 cut(s) 129, 538, 961, 1095, 1105
BbvI GCAGC 2 cut(s) 249, 461
BccI CCATC 5 cut(s) 169, 332, 448, 715, 970
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 2 cut(s) 855, 1068
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 12, 1076
BfaI CTAG 1 cut(s) 44
BisI GCNGC 5 cut(s) 238, 312, 475, 597, 600
BlsI GCNGC 5 cut(s) 239, 313, 476, 598, 601
Bme1390I CCNGG 3 cut(s) 399, 855, 1068
Bme18I GGWCC 3 cut(s) 289, 625, 860
BmgBI CACGTC 2 cut(s) 266, 514
BmgT120I GGNCC 6 cut(s) 289, 337, 615, 625, 860, 1064
BmiI GGNNCC 8 cut(s) 30, 249, 291, 338, 403, 616, 627, 861
BmrFI CCNGG 3 cut(s) 399, 855, 1068
BoxI GACNNNNGTC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 427, 854
BsaWI WCCGGW 2 cut(s) 450, 622
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 688
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 1030
BseAI TCCGGA 1 cut(s) 622
BseBI CCWGG 2 cut(s) 855, 1068
BseDI CCNNGG 2 cut(s) 427, 854
BseGI GGATG 3 cut(s) 565, 850, 988
BseLI CCNNNNNNNGG 2 cut(s) 299, 688
BseMII CTCAG 1 cut(s) 926
BseNI ACTGG 1 cut(s) 1030
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 249, 461
BseYI CCCAGC 1 cut(s) 892
BsgI GTGCAG 1 cut(s) 358
BshFI GGCC 6 cut(s) 323, 339, 432, 518, 617, 1066
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 450
BsiHKAI GWGCWC 5 cut(s) 129, 538, 961, 1095, 1105
BsiSI CCGG 4 cut(s) 399, 451, 531, 623
BslFI GGGAC 3 cut(s) 67, 275, 502
BslI CCNNNNNNNGG 2 cut(s) 299, 688
BsmAI GTCTC 2 cut(s) 12, 1076
BsmFI GGGAC 3 cut(s) 67, 275, 502
BsnI GGCC 6 cut(s) 323, 339, 432, 518, 617, 1066
Bsp1286I GDGCHC 5 cut(s) 129, 538, 961, 1095, 1105
Bsp13I TCCGGA 1 cut(s) 622
Bsp143I GATC 3 cut(s) 459, 546, 1059
BspACI CCGC 4 cut(s) 311, 596, 599, 1096
BspANI GGCC 6 cut(s) 323, 339, 432, 518, 617, 1066
BspCNI CTCAG 1 cut(s) 927
BspEI TCCGGA 1 cut(s) 622
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 8 cut(s) 30, 249, 291, 338, 403, 616, 627, 861
BspPI GGATC 1 cut(s) 1067
BspQI GCTCTTC 1 cut(s) 882
BspT107I GGYRCC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 1 cut(s) 1030
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 2 cut(s) 427, 854
BssMI GATC 3 cut(s) 459, 546, 1059
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 2 cut(s) 284, 537
Bst2BI CACGAG 2 cut(s) 284, 537
Bst2UI CCWGG 2 cut(s) 855, 1068
Bst4CI ACNGT 5 cut(s) 493, 593, 648, 1078, 1087
Bst6I CTCTTC 3 cut(s) 201, 774, 882
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 935
BstF5I GGATG 3 cut(s) 565, 850, 988
BstKTI GATC 3 cut(s) 462, 549, 1062
BstMAI GTCTC 2 cut(s) 12, 1076
BstMBI GATC 3 cut(s) 459, 546, 1059
BstMWI GCNNNNNNNGC 4 cut(s) 20, 320, 421, 1109
BstNI CCWGG 2 cut(s) 855, 1068
BstNSI RCATGY 2 cut(s) 397, 932
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 3 cut(s) 397, 853, 1066
BstV1I GCAGC 2 cut(s) 249, 461
BstV2I GAAGAC 1 cut(s) 93
BsuRI GGCC 6 cut(s) 323, 339, 432, 518, 617, 1066
BtrI CACGTC 2 cut(s) 266, 514
BtsCI GGATG 3 cut(s) 565, 850, 988
BtsI GCAGTG 2 cut(s) 1105, 1107
BtsIMutI CAGTG 3 cut(s) 1074, 1105, 1107
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 580
CciI TCATGA 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 6 cut(s) 289, 337, 615, 625, 860, 1064
CseI GACGC 3 cut(s) 187, 269, 376
CspAI ACCGGT 1 cut(s) 450
CviAII CATG 5 cut(s) 394, 457, 658, 695, 929
DdeI CTNAG 1 cut(s) 935
DpnI GATC 3 cut(s) 461, 548, 1061
DpnII GATC 3 cut(s) 459, 546, 1059
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 3 cut(s) 201, 774, 882
EarI CTCTTC 3 cut(s) 201, 774, 882
Ecl136II GAGCTC 2 cut(s) 536, 959
Eco24I GRGCYC 2 cut(s) 538, 961
Eco32I GATATC 1 cut(s) 191
Eco47I GGWCC 3 cut(s) 289, 625, 860
Eco53kI GAGCTC 2 cut(s) 536, 959
Eco57I CTGAAG 1 cut(s) 935
EcoICRI GAGCTC 2 cut(s) 536, 959
EcoO109I RGGNCCY 2 cut(s) 289, 860
EcoRII CCWGG 2 cut(s) 853, 1066
EcoRV GATATC 1 cut(s) 191
EcoT38I GRGCYC 2 cut(s) 538, 961
FaeI CATG 5 cut(s) 397, 460, 661, 698, 932
FaqI GGGAC 3 cut(s) 67, 275, 502
FatI CATG 5 cut(s) 393, 456, 657, 694, 928
FauNDI CATATG 1 cut(s) 161
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 5 cut(s) 238, 312, 475, 597, 600
FokI GGATG 3 cut(s) 572, 837, 995
FriOI GRGCYC 2 cut(s) 538, 961
Fsp4HI GCNGC 5 cut(s) 238, 312, 475, 597, 600
FspBI CTAG 1 cut(s) 44
GluI GCNGC 5 cut(s) 238, 312, 475, 597, 600
GsaI CCCAGC 1 cut(s) 896
HaeIII GGCC 6 cut(s) 323, 339, 432, 518, 617, 1066
HapII CCGG 4 cut(s) 399, 451, 531, 623
HgaI GACGC 3 cut(s) 187, 269, 376
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 5 cut(s) 397, 460, 661, 698, 932
HincII GTYRAC 2 cut(s) 391, 644
HindII GTYRAC 2 cut(s) 391, 644
HinfI GANTC 3 cut(s) 5, 211, 1071
HpaII CCGG 4 cut(s) 399, 451, 531, 623
HphI GGTGA 4 cut(s) 106, 349, 833, 1040
Hpy166II GTNNAC 4 cut(s) 391, 553, 638, 644
Hpy188I TCNGA 6 cut(s) 329, 546, 572, 589, 691, 748
Hpy188III TCNNGA 6 cut(s) 95, 269, 284, 457, 623, 872
Hpy8I GTNNAC 4 cut(s) 391, 553, 638, 644
Hpy99I CGWCG 2 cut(s) 263, 392
HpyAV CCTTC 3 cut(s) 895, 910, 1025
HpyCH4III ACNGT 5 cut(s) 493, 593, 648, 1078, 1087
HpyCH4IV ACGT 3 cut(s) 265, 513, 640
HpyCH4V TGCA 4 cut(s) 59, 237, 375, 866
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 320, 421, 1109
HpyF3I CTNAG 1 cut(s) 935
HpySE526I ACGT 3 cut(s) 265, 513, 640
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 5 cut(s) 397, 460, 661, 698, 932
Kpn2I TCCGGA 1 cut(s) 622
Kzo9I GATC 3 cut(s) 459, 546, 1059
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 8 cut(s) 253, 429, 533, 691, 956, 964, 1098, 1108
Lsp1109I GCAGC 2 cut(s) 249, 461
MaeI CTAG 1 cut(s) 44
MaeII ACGT 3 cut(s) 265, 513, 640
MaeIII GTNAC 2 cut(s) 112, 199
MalI GATC 3 cut(s) 461, 548, 1061
MboI GATC 3 cut(s) 459, 546, 1059
MboII GAAGA 7 cut(s) 98, 218, 361, 791, 896, 899, 1006
MhlI GDGCHC 5 cut(s) 129, 538, 961, 1095, 1105
MluCI AATT 4 cut(s) 137, 279, 867, 1053
MlyI GAGTC 3 cut(s) 14, 220, 1065
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 8 cut(s) 262, 280, 365, 374, 437, 796, 898, 1000
MroI TCCGGA 1 cut(s) 622
MseI TTAA 4 cut(s) 140, 317, 816, 1052
MslI CAYNNNNRTG 2 cut(s) 558, 714
MspI CCGG 4 cut(s) 399, 451, 531, 623
MspR9I CCNGG 3 cut(s) 399, 855, 1068
MvaI CCWGG 2 cut(s) 855, 1068
MwoI GCNNNNNNNGC 4 cut(s) 20, 320, 421, 1109
NciI CCSGG 1 cut(s) 399
NdeI CATATG 1 cut(s) 161
NdeII GATC 3 cut(s) 459, 546, 1059
NlaIII CATG 5 cut(s) 397, 460, 661, 698, 932
NlaIV GGNNCC 8 cut(s) 30, 249, 291, 338, 403, 616, 627, 861
NmeAIII GCCGAG 2 cut(s) 408, 544
NmuCI GTSAC 2 cut(s) 112, 199
NspI RCATGY 2 cut(s) 397, 932
PagI TCATGA 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 882
PinAI ACCGGT 1 cut(s) 450
PkrI GCNGC 5 cut(s) 239, 313, 476, 598, 601
PleI GAGTC 3 cut(s) 13, 219, 1065
PpsI GAGTC 3 cut(s) 13, 219, 1065
PpuMI RGGWCCY 2 cut(s) 289, 860
PshAI GACNNNNGTC 1 cut(s) 264
Psp124BI GAGCTC 2 cut(s) 538, 961
Psp5II RGGWCCY 2 cut(s) 289, 860
Psp6I CCWGG 2 cut(s) 853, 1066
PspFI CCCAGC 1 cut(s) 892
PspGI CCWGG 2 cut(s) 853, 1066
PspN4I GGNNCC 8 cut(s) 30, 249, 291, 338, 403, 616, 627, 861
PspPI GGNCC 6 cut(s) 289, 337, 615, 625, 860, 1064
PspPPI RGGWCCY 2 cut(s) 289, 860
PstNI CAGNNNCTG 1 cut(s) 580
RseI CAYNNNNRTG 2 cut(s) 558, 714
SacI GAGCTC 2 cut(s) 538, 961
SalI GTCGAC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 4 cut(s) 140, 317, 816, 1052
SatI GCNGC 5 cut(s) 238, 312, 475, 597, 600
Sau3AI GATC 3 cut(s) 459, 546, 1059
Sau96I GGNCC 6 cut(s) 289, 337, 615, 625, 860, 1064
SchI GAGTC 3 cut(s) 14, 220, 1065
ScrFI CCNGG 3 cut(s) 399, 855, 1068
SduI GDGCHC 5 cut(s) 129, 538, 961, 1095, 1105
SinI GGWCC 3 cut(s) 289, 625, 860
SmiMI CAYNNNNRTG 2 cut(s) 558, 714
Sse9I AATT 4 cut(s) 137, 279, 867, 1053
SsiI CCGC 4 cut(s) 311, 596, 599, 1096
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 2 cut(s) 538, 961
StyD4I CCNGG 3 cut(s) 397, 853, 1066
TaaI ACNGT 5 cut(s) 493, 593, 648, 1078, 1087
TaiI ACGT 3 cut(s) 268, 516, 643
TaqI TCGA 4 cut(s) 173, 258, 390, 777
TaqII GACCGA 1 cut(s) 149
TasI AATT 4 cut(s) 137, 279, 867, 1053
TauI GCSGC 3 cut(s) 314, 599, 602
Tru1I TTAA 4 cut(s) 140, 317, 816, 1052
Tru9I TTAA 4 cut(s) 140, 317, 816, 1052
TscAI CASTG 3 cut(s) 1081, 1105, 1114
TseFI GTSAC 2 cut(s) 112, 199
TseI GCWGC 2 cut(s) 237, 474
Tsp45I GTSAC 2 cut(s) 112, 199
TspDTI ATGAA 2 cut(s) 445, 839
TspGWI ACGGA 1 cut(s) 514
TspRI CASTG 3 cut(s) 1081, 1105, 1114
VpaK11BI GGWCC 3 cut(s) 289, 625, 860
XceI RCATGY 2 cut(s) 397, 932
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.