Rmu_co8152518.1_g000001

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8152518.1
OG0000409
Physical Location & Seq
Forward (+)
409 .. 618
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8152518.1_g000001.1.cds

Sequence Viewer

Length: 210 bp
atggtgaccgtcgaggaagtccgcaaggctcaacgtgctgagggtccggccaccgtcttggccatcgggacagccactccaccgaactgtattgaccagagcacataccccgactactacttccgtatcaccaacagcgagcacaaggctgagctcaaggagaaattccagcgcatgtgtaagtactatcacctagccactgatcgatga

Protein Analysis

69

Amino Acids

7.98

Weight (kDa)

7.78

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 22
AcoI YGGCCR 2 cut(s) 48, 60
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 185
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 3 cut(s) 104, 144, 156
AoxI GGCC 2 cut(s) 48, 60
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 16, 121, 182
AvaII GGWCC 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 109, 142
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 3 cut(s) 104, 144, 156
BbvCI CCTCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 71
BfaI CTAG 1 cut(s) 194
BlpI GCTNAGC 1 cut(s) 150
BmcAI AGTACT 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
BseCI ATCGAT 1 cut(s) 205
BseMII CTCAG 2 cut(s) 30, 141
BshFI GGCC 2 cut(s) 50, 62
BshVI ATCGAT 1 cut(s) 205
BsiHKAI GWGCWC 3 cut(s) 104, 144, 156
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 2 cut(s) 50, 62
Bsp1286I GDGCHC 3 cut(s) 104, 144, 156
Bsp143I GATC 1 cut(s) 202
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 1 cut(s) 22
BspANI GGCC 2 cut(s) 50, 62
BspCNI CTCAG 2 cut(s) 31, 142
BspDI ATCGAT 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 45
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 3 cut(s) 10, 55, 89
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 39, 150
BstEII GGTNACC 1 cut(s) 4
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 178
BstPI GGTNACC 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 205
BsuRI GGCC 2 cut(s) 50, 62
BsuTUI ATCGAT 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 140
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 205
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 175
CviJI RGCY 7 cut(s) 29, 50, 62, 74, 149, 154, 197
CviKI_1 RGCY 7 cut(s) 29, 50, 62, 74, 149, 154, 197
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 39, 150
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
EaeI YGGCCR 2 cut(s) 48, 60
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 154
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 4
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 106, 176
FaqI GGGAC 1 cut(s) 82
FatI CATG 1 cut(s) 174
FriOI GRGCYC 1 cut(s) 156
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 173
HaeIII GGCC 2 cut(s) 50, 62
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 174
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 16, 121, 182
Hpy188III TCNNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 3 cut(s) 10, 55, 89
HpyCH4IV ACGT 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 39, 150
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 3 cut(s) 60, 110, 182
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MhlI GDGCHC 3 cut(s) 104, 144, 156
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 1 cut(s) 164
MluNI TGGCCA 1 cut(s) 62
MnlI CCTC 2 cut(s) 7, 34
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 156
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 44
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 185
SduI GDGCHC 3 cut(s) 104, 144, 156
SetI ASST 3 cut(s) 37, 156, 195
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 164
SsiI CCGC 1 cut(s) 22
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 156
TaaI ACNGT 3 cut(s) 10, 55, 89
TaiI ACGT 1 cut(s) 37
TaqI TCGA 2 cut(s) 12, 205
TasI AATT 1 cut(s) 164
TatI WGTACW 1 cut(s) 183
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.