MD15G1132100.v1.1

Belongs to the chalcone stilbene synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000409
Physical Location & Seq
Reverse (-)
9576019 .. 9576932
914 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1132100.v1.1.491

Sequence Viewer

Length: 822 bp
ATGTTGAACCCTGAGGTCCCAAAGCTAGGGCAACAAGCAGCACTAAAAGCCATCAAAGAGTGGGGCCAGCCCATCTCAAAGATCACCCACCTCATCTTTTGCACAGCTTTTTGCGTTGACATGCCAGGTGCCGACTTCCAATTGGTCAAGCTCCTCGGCCTTAACCCATCCGTCACCAGAACCATGATCTATGAAGCTGGTTGCTATGCTGGTGCGACTGTCCTCCGCCTGGCCAAGGACTTCACAGAGAACAATGAGGGTGCACGCGTCCTTGTGGCTCTTTTTGCTGACGGAGCATCTGCTGTGATAGTTGGGGCTAATCCAGAGCCTAAAATTGAGAGGCCGCTGTTTGAAAACGTGGCATGCAGGCAGACGATCATACCTAACTCAGAGCATGGTGTAGTGGCCAACATTCGTGAAATGGGGTTTAATTATTATTTATCGGGAGAAGTCCCCAAATTTGTTGGTGGAAGTGTTGTGGATTTTCTGACTAAAACTTTTGAAAAGGTTGACGGAAAGAATAAGGACTGGAACTCCTTGTTTTTCAGTGTGCACCCTGGTGGGCCTGCCATTGTAGACCAGGTGGAGGAGCAATTGGGTTTGAAGGAAGGGAAGCTTAGGGCTACAAGGCATGTGTTGAGTGAGTATGGCAACATGGGAGCTCCATCGGTGCACTTTATTTTGGATGAGATGAGAAATAAGTCGATTGGGGAAGGCAAAGCCACAACTGGTGAAGGTTTAGAATGGGGTGTCGTGATTGGAATTGGACCGGGACTCACTGTCGAGACAGTCATACTGCGTAGTGAATCTATTACATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712
Pfam Domains
Protein Families
Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

274

Amino Acids

29.6

Weight (kDa)

5.63

Isoelectric Point (pI)

25.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 2 - 92 7e-42 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C PF02797 121 - 268 1.2e-49 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 576
AccII CGCG 1 cut(s) 267
AciI CCGC 2 cut(s) 226, 344
AcoI YGGCCR 2 cut(s) 231, 405
AcsI RAATTY 1 cut(s) 458
AfiI CCNNNNNNNGG 4 cut(s) 26, 229, 235, 586
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 4 cut(s) 7, 353, 503, 604
AhdI GACNNNNNGTC 1 cut(s) 779
AjnI CCWGG 4 cut(s) 124, 228, 556, 579
AleI CACNNNNGTG 1 cut(s) 558
AluBI AGCT 6 cut(s) 25, 107, 151, 197, 616, 662
AluI AGCT 6 cut(s) 25, 107, 151, 197, 616, 662
Alw21I GWGCWC 4 cut(s) 265, 555, 664, 675
Alw26I GTCTC 1 cut(s) 779
Alw44I GTGCAC 3 cut(s) 261, 551, 671
AoxI GGCC 6 cut(s) 64, 157, 231, 341, 405, 563
ApaLI GTGCAC 3 cut(s) 261, 551, 671
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 458
AspS9I GGNCC 4 cut(s) 16, 64, 563, 767
AsuC2I CCSGG 1 cut(s) 771
AsuHPI GGTGA 3 cut(s) 76, 166, 743
AvaII GGWCC 2 cut(s) 16, 767
AxyI CCTNAGG 1 cut(s) 12
BaeGI GKGCMC 3 cut(s) 265, 555, 675
BalI TGGCCA 2 cut(s) 233, 407
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 664
Bbv12I GWGCWC 4 cut(s) 265, 555, 664, 675
BbvI GCAGC 1 cut(s) 50
BccI CCATC 4 cut(s) 59, 80, 175, 673
BciT130I CCWGG 4 cut(s) 126, 230, 558, 581
BcnI CCSGG 1 cut(s) 771
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 1 cut(s) 26
BisI GCNGC 2 cut(s) 39, 344
BlsI GCNGC 2 cut(s) 40, 345
Bme1390I CCNGG 5 cut(s) 126, 230, 558, 581, 771
Bme18I GGWCC 2 cut(s) 16, 767
BmeRI GACNNNNNGTC 1 cut(s) 779
BmgT120I GGNCC 4 cut(s) 16, 64, 563, 767
BmiI GGNNCC 3 cut(s) 18, 65, 130
BmrFI CCNGG 5 cut(s) 126, 230, 558, 581, 771
BmsI GCATC 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 617
BpuMI CCSGG 1 cut(s) 771
BsaJI CCNNGG 3 cut(s) 154, 234, 556
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 229, 235, 586
Bse1I ACTGG 2 cut(s) 533, 733
Bse21I CCTNAGG 1 cut(s) 12
BseBI CCWGG 4 cut(s) 126, 230, 558, 581
BseDI CCNNGG 3 cut(s) 154, 234, 556
BseGI GGATG 2 cut(s) 167, 691
BseLI CCNNNNNNNGG 4 cut(s) 26, 229, 235, 586
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 2 cut(s) 533, 733
BseRI GAGGAG 2 cut(s) 143, 602
BseSI GKGCMC 3 cut(s) 265, 555, 675
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 6 cut(s) 66, 159, 233, 343, 407, 565
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 4 cut(s) 265, 555, 664, 675
BsiSI CCGG 1 cut(s) 770
BslFI GGGAC 3 cut(s) 2, 437, 786
BslI CCNNNNNNNGG 4 cut(s) 26, 229, 235, 586
BsmAI GTCTC 1 cut(s) 779
BsmFI GGGAC 3 cut(s) 2, 437, 786
BsnI GGCC 6 cut(s) 66, 159, 233, 343, 407, 565
Bsp1286I GDGCHC 4 cut(s) 265, 555, 664, 675
Bsp143I GATC 3 cut(s) 81, 186, 375
BspACI CCGC 2 cut(s) 226, 344
BspANI GGCC 6 cut(s) 66, 159, 233, 343, 407, 565
BspCNI CTCAG 2 cut(s) 4, 401
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 18, 65, 130
BspT107I GGYRCC 1 cut(s) 128
BsrI ACTGG 2 cut(s) 533, 733
BssECI CCNNGG 3 cut(s) 154, 234, 556
BssMI GATC 3 cut(s) 81, 186, 375
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 4 cut(s) 126, 230, 558, 581
Bst4CI ACNGT 3 cut(s) 220, 781, 790
BstC8I GCNNGC 5 cut(s) 68, 265, 364, 368, 567
BstDEI CTNAG 3 cut(s) 12, 388, 617
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 167, 691
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 3 cut(s) 84, 189, 378
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 3 cut(s) 81, 186, 375
BstMWI GCNNNNNNNGC 3 cut(s) 47, 284, 293
BstNI CCWGG 4 cut(s) 126, 230, 558, 581
BstNSI RCATGY 3 cut(s) 124, 366, 635
BstSCI CCNGG 5 cut(s) 124, 228, 556, 579, 769
BstSLI GKGCMC 3 cut(s) 265, 555, 675
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 50
Bsu36I CCTNAGG 1 cut(s) 12
BsuRI GGCC 6 cut(s) 66, 159, 233, 343, 407, 565
BtsCI GGATG 2 cut(s) 167, 691
BtsIMutI CAGTG 2 cut(s) 553, 777
Cac8I GCNNGC 5 cut(s) 68, 265, 364, 368, 567
Cfr13I GGNCC 4 cut(s) 16, 64, 563, 767
CseI GACGC 1 cut(s) 256
CsiI ACCWGGT 1 cut(s) 579
CviAII CATG 6 cut(s) 121, 184, 363, 395, 632, 655
DdeI CTNAG 3 cut(s) 12, 388, 617
DpnI GATC 3 cut(s) 83, 188, 377
DpnII GATC 3 cut(s) 81, 186, 375
DriI GACNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 2 cut(s) 231, 405
Eam1105I GACNNNNNGTC 1 cut(s) 779
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 662
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 664
Eco47I GGWCC 2 cut(s) 16, 767
Eco53kI GAGCTC 1 cut(s) 662
Eco81I CCTNAGG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 662
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 16
EcoRII CCWGG 4 cut(s) 124, 228, 556, 579
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 6 cut(s) 124, 187, 366, 398, 635, 658
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FaqI GGGAC 3 cut(s) 2, 437, 786
FatI CATG 6 cut(s) 120, 183, 362, 394, 631, 654
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 2 cut(s) 39, 344
FokI GGATG 2 cut(s) 154, 698
FriOI GRGCYC 1 cut(s) 664
Fsp4HI GCNGC 2 cut(s) 39, 344
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 39, 344
HaeIII GGCC 6 cut(s) 66, 159, 233, 343, 407, 565
HapII CCGG 1 cut(s) 770
HgaI GACGC 1 cut(s) 256
Hin1II CATG 6 cut(s) 124, 187, 366, 398, 635, 658
HincII GTYRAC 2 cut(s) 118, 511
HindII GTYRAC 2 cut(s) 118, 511
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 2 cut(s) 774, 806
HpaII CCGG 1 cut(s) 770
HphI GGTGA 3 cut(s) 76, 166, 743
Hpy166II GTNNAC 6 cut(s) 118, 263, 511, 553, 577, 673
Hpy188I TCNGA 2 cut(s) 391, 489
Hpy188III TCNNGA 5 cut(s) 323, 416, 444, 754, 784
Hpy8I GTNNAC 6 cut(s) 118, 263, 511, 553, 577, 673
HpyAV CCTTC 4 cut(s) 598, 602, 707, 728
HpyCH4III ACNGT 3 cut(s) 220, 781, 790
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 5 cut(s) 102, 263, 366, 553, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 284, 293
HpyF3I CTNAG 3 cut(s) 12, 388, 617
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 6 cut(s) 124, 187, 366, 398, 635, 658
Kzo9I GATC 3 cut(s) 81, 186, 375
LmnI GCTCC 5 cut(s) 156, 293, 589, 659, 667
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 305
MabI ACCWGGT 1 cut(s) 579
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 172
MalI GATC 3 cut(s) 83, 188, 377
MboI GATC 3 cut(s) 81, 186, 375
MfeI CAATTG 2 cut(s) 140, 593
MhlI GDGCHC 4 cut(s) 265, 555, 664, 675
MlsI TGGCCA 2 cut(s) 233, 407
MluCI AATT 6 cut(s) 140, 333, 430, 458, 593, 762
MluI ACGCGT 1 cut(s) 265
MluNI TGGCCA 2 cut(s) 233, 407
MlyI GAGTC 1 cut(s) 768
MnlI CCTC 7 cut(s) 7, 101, 164, 233, 250, 333, 580
Mox20I TGGCCA 2 cut(s) 233, 407
MscI TGGCCA 2 cut(s) 233, 407
MseI TTAA 2 cut(s) 162, 429
MslI CAYNNNNRTG 1 cut(s) 558
Msp20I TGGCCA 2 cut(s) 233, 407
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 1 cut(s) 770
MspR9I CCNGG 5 cut(s) 126, 230, 558, 581, 771
MunI CAATTG 2 cut(s) 140, 593
MvaI CCWGG 4 cut(s) 126, 230, 558, 581
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 47, 284, 293
NciI CCSGG 1 cut(s) 771
NdeII GATC 3 cut(s) 81, 186, 375
NlaIII CATG 6 cut(s) 124, 187, 366, 398, 635, 658
NlaIV GGNNCC 3 cut(s) 18, 65, 130
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 3 cut(s) 124, 366, 635
OliI CACNNNNGTG 1 cut(s) 558
PaeI GCATGC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 806
PkrI GCNGC 2 cut(s) 40, 345
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
PpuMI RGGWCCY 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 664
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 4 cut(s) 124, 228, 556, 579
PspGI CCWGG 4 cut(s) 124, 228, 556, 579
PspN4I GGNNCC 3 cut(s) 18, 65, 130
PspPI GGNCC 4 cut(s) 16, 64, 563, 767
PspPPI RGGWCCY 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 558
SacI GAGCTC 1 cut(s) 664
SaqAI TTAA 2 cut(s) 162, 429
SatI GCNGC 2 cut(s) 39, 344
Sau3AI GATC 3 cut(s) 81, 186, 375
Sau96I GGNCC 4 cut(s) 16, 64, 563, 767
SchI GAGTC 1 cut(s) 768
ScrFI CCNGG 5 cut(s) 126, 230, 558, 581, 771
SduI GDGCHC 4 cut(s) 265, 555, 664, 675
SexAI ACCWGGT 1 cut(s) 579
SfaNI GCATC 1 cut(s) 305
SinI GGWCC 2 cut(s) 16, 767
SmiMI CAYNNNNRTG 1 cut(s) 558
SphI GCATGC 1 cut(s) 366
Sse9I AATT 6 cut(s) 140, 333, 430, 458, 593, 762
SsiI CCGC 2 cut(s) 226, 344
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 664
StyD4I CCNGG 5 cut(s) 124, 228, 556, 579, 769
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 3 cut(s) 220, 781, 790
TaiI ACGT 1 cut(s) 360
TaqI TCGA 2 cut(s) 704, 783
TasI AATT 6 cut(s) 140, 333, 430, 458, 593, 762
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 1 cut(s) 806
Tru1I TTAA 2 cut(s) 162, 429
Tru9I TTAA 2 cut(s) 162, 429
TscAI CASTG 2 cut(s) 553, 784
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 207
TspGWI ACGGA 3 cut(s) 160, 306, 528
TspRI CASTG 2 cut(s) 553, 784
VneI GTGCAC 3 cut(s) 261, 551, 671
VpaK11BI GGWCC 2 cut(s) 16, 767
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 1 cut(s) 458
XceI RCATGY 3 cut(s) 124, 366, 635
XmiI GTMKAC 1 cut(s) 576
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.