FvH4_2g28050

Belongs to the chalcone stilbene synthases family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
22127948 .. 22128940
993 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28050.t1

Sequence Viewer

Length: 993 bp
ATGGTGAAGAAGCGTTATCTGGGTATCACAGAAGATAGTCTGAAAGCCAACCCTAACATATGCACCTACAAGGCTCCCTCACTCAATGCACGTCAAGACTTGTTGATTCACGAGGTCCCCAAGCTCGGCAAAGAAGCGGCGTTGAAGGCCATCAAAGAATGGGGACATCCCATTTCGAGCCTCACCCACCTCATCTTCTGCACAGCTTCCTGTGTCGACATGCCTGGTGCCGACTTTCAGCTCGTCAAGCTCCTCGGCCTCAATCCATCTATCAACCGGTTCATGATCTACCAGCAAGGCTGCTTTGCTGGTGGGACGGTGCTACGCATTGCCAAGGACATAGCCGAGAACAATGCCGGAGCTCGTGTTCTTATCGTGTGCTGTGAGATCACCACCATGTTTTTTCAGCAACCATGTGACAGCCACTTGGATGTTTTGGTCGGACAGGCTCTGTTTTCAGACGGTGCGGCAGCTTTGGTCGTTGGGGCTAATCCGGACCCTGAAAGTGAATGTCAACTTTTCAATGTTATGTCTGCTAGAGAGACTATTATCCCAAACTCGGAGCATGGAGTTGTGGCACACTTGCGTGAGATGGGGTTTGAGTATTATTTATCGTCAGAAGTTCCAAAGTTGGTTGGTGGGAAAATAGAAGAGTGTTTGAGTAAAGGGTTTGAGGGCTTTGGGGTTAATGGTGATTGGAACTCATTGTTCTATAGCATTCATCCTGGGGGTCCTGCCATTCTTGACAAGGTGGAAGAACAATTGGGTTTGAAGGAGGGGAAGCTGAGGGCAACAAGGCATGTACTGAGTGAGTTCGGTAATATGGGAGCACCATCTGTGCTTTTTATTTTGGATGAGTTGAGGAAGAAGTCAATGGAGGAAGGAAAAGCCACAACTGGTGAAGGGTTGGAATGGGGGGTGTTAATTGGGATCGGGCCAGGACTTACTGTGGAGACTGTTGTGCTCCGTAGTGCTCCGGCCACTGCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

331

Amino Acids

35.67

Weight (kDa)

5.56

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_N PF00195 1 - 165 1.5e-76 Chalcone and stilbene synthases, N-terminal domain
Chal_sti_synt_C PF02797 176 - 325 1.1e-52 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 2 cut(s) 137, 467
AclWI GGATC 1 cut(s) 938
AcoI YGGCCR 1 cut(s) 978
AfaI GTAC 1 cut(s) 804
AfiI CCNNNNNNNGG 2 cut(s) 125, 559
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 3 cut(s) 145, 523, 772
AjiI CACGTC 1 cut(s) 92
AjnI CCWGG 3 cut(s) 223, 724, 937
AleI CACNNNNGTG 1 cut(s) 585
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 7 cut(s) 124, 206, 241, 250, 362, 473, 784
AluI AGCT 7 cut(s) 124, 206, 241, 250, 362, 473, 784
Alw21I GWGCWC 4 cut(s) 364, 832, 966, 976
Alw26I GTCTC 2 cut(s) 536, 947
AlwI GGATC 1 cut(s) 938
AlwNI CAGNNNCTG 1 cut(s) 451
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 4 cut(s) 147, 256, 935, 978
ApeKI GCWGC 2 cut(s) 300, 470
AsiGI ACCGGT 1 cut(s) 276
AspS9I GGNCC 4 cut(s) 115, 496, 731, 935
AsuHPI GGTGA 5 cut(s) 16, 175, 382, 704, 911
AvaII GGWCC 3 cut(s) 115, 496, 731
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 364
BauI CACGAG 2 cut(s) 110, 363
Bbv12I GWGCWC 4 cut(s) 364, 832, 966, 976
BbvCI CCTCAGC 1 cut(s) 785
BbvI GCAGC 2 cut(s) 287, 482
BccI CCATC 4 cut(s) 158, 274, 586, 841
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 3 cut(s) 225, 726, 939
BcoDI GTCTC 2 cut(s) 536, 947
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 712
BisI GCNGC 4 cut(s) 138, 301, 468, 471
BlsI GCNGC 4 cut(s) 139, 302, 469, 472
Bme1390I CCNGG 3 cut(s) 225, 726, 939
Bme18I GGWCC 3 cut(s) 115, 496, 731
BmgBI CACGTC 1 cut(s) 92
BmgT120I GGNCC 4 cut(s) 115, 496, 731, 935
BmiI GGNNCC 5 cut(s) 75, 117, 229, 498, 732
BmrFI CCNGG 3 cut(s) 225, 726, 939
Bpu10I CCTNAGC 1 cut(s) 785
BsaJI CCNNGG 3 cut(s) 253, 333, 725
BsaWI WCCGGW 2 cut(s) 276, 493
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 559
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 901
Bse3DI GCAATG 1 cut(s) 327
BseAI TCCGGA 1 cut(s) 493
BseBI CCWGG 3 cut(s) 225, 726, 939
BseDI CCNNGG 3 cut(s) 253, 333, 725
BseGI GGATG 4 cut(s) 166, 436, 721, 859
BseLI CCNNNNNNNGG 2 cut(s) 125, 559
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 776, 797
BseNI ACTGG 1 cut(s) 901
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 287, 482
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 4 cut(s) 149, 258, 937, 980
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 276
BsiHKAI GWGCWC 4 cut(s) 364, 832, 966, 976
BsiSI CCGG 4 cut(s) 277, 357, 494, 977
BslFI GGGAC 3 cut(s) 101, 177, 328
BslI CCNNNNNNNGG 2 cut(s) 125, 559
BsmAI GTCTC 2 cut(s) 536, 947
BsmFI GGGAC 3 cut(s) 101, 177, 328
BsmI GAATGC 1 cut(s) 717
BsnI GGCC 4 cut(s) 149, 258, 937, 980
Bsp1286I GDGCHC 4 cut(s) 364, 832, 966, 976
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 3 cut(s) 285, 387, 930
BspACI CCGC 2 cut(s) 137, 467
BspANI GGCC 4 cut(s) 149, 258, 937, 980
BspCNI CTCAG 2 cut(s) 777, 798
BspEI TCCGGA 1 cut(s) 493
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 5 cut(s) 75, 117, 229, 498, 732
BspPI GGATC 1 cut(s) 938
BspT107I GGYRCC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 327
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 1 cut(s) 901
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 3 cut(s) 253, 333, 725
BssMI GATC 3 cut(s) 285, 387, 930
BssSI CACGAG 2 cut(s) 110, 363
BssT1I CCWWGG 1 cut(s) 333
Bst2BI CACGAG 2 cut(s) 110, 363
Bst2UI CCWGG 3 cut(s) 225, 726, 939
Bst4CI ACNGT 4 cut(s) 319, 464, 949, 958
Bst6I CTCTTC 1 cut(s) 645
BstDEI CTNAG 2 cut(s) 785, 806
BstF5I GGATG 4 cut(s) 166, 436, 721, 859
BstKTI GATC 3 cut(s) 288, 390, 933
BstMAI GTCTC 2 cut(s) 536, 947
BstMBI GATC 3 cut(s) 285, 387, 930
BstMWI GCNNNNNNNGC 2 cut(s) 146, 247
BstNI CCWGG 3 cut(s) 225, 726, 939
BstNSI RCATGY 2 cut(s) 223, 803
BstSCI CCNGG 3 cut(s) 223, 724, 937
BstSFI CTRYAG 1 cut(s) 712
BstV1I GCAGC 2 cut(s) 287, 482
BsuRI GGCC 4 cut(s) 149, 258, 937, 980
BtrI CACGTC 1 cut(s) 92
BtsCI GGATG 4 cut(s) 166, 436, 721, 859
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 1 cut(s) 981
CaiI CAGNNNCTG 1 cut(s) 451
CciI TCATGA 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 4 cut(s) 115, 496, 731, 935
Csp6I GTAC 1 cut(s) 803
CspAI ACCGGT 1 cut(s) 276
CviAII CATG 6 cut(s) 220, 283, 397, 414, 566, 800
CviQI GTAC 1 cut(s) 803
DdeI CTNAG 2 cut(s) 785, 806
DpnI GATC 3 cut(s) 287, 389, 932
DpnII GATC 3 cut(s) 285, 387, 930
EaeI YGGCCR 1 cut(s) 978
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 364
Eco47I GGWCC 3 cut(s) 115, 496, 731
Eco53kI GAGCTC 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 362
EcoO109I RGGNCCY 2 cut(s) 115, 731
EcoRII CCWGG 3 cut(s) 223, 724, 937
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 6 cut(s) 223, 286, 400, 417, 569, 803
FaqI GGGAC 3 cut(s) 101, 177, 328
FatI CATG 6 cut(s) 219, 282, 396, 413, 565, 799
FauNDI CATATG 1 cut(s) 59
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 138, 301, 468, 471
FokI GGATG 4 cut(s) 153, 443, 708, 866
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 4 cut(s) 138, 301, 468, 471
FspBI CTAG 1 cut(s) 537
GluI GCNGC 4 cut(s) 138, 301, 468, 471
HaeIII GGCC 4 cut(s) 149, 258, 937, 980
HapII CCGG 4 cut(s) 277, 357, 494, 977
Hin1II CATG 6 cut(s) 223, 286, 400, 417, 569, 803
HincII GTYRAC 2 cut(s) 217, 515
HindII GTYRAC 2 cut(s) 217, 515
HinfI GANTC 1 cut(s) 106
HpaII CCGG 4 cut(s) 277, 357, 494, 977
HphI GGTGA 5 cut(s) 16, 175, 382, 704, 911
Hpy166II GTNNAC 2 cut(s) 217, 515
Hpy188I TCNGA 5 cut(s) 42, 443, 460, 562, 619
Hpy188III TCNNGA 5 cut(s) 95, 110, 283, 494, 743
Hpy8I GTNNAC 2 cut(s) 217, 515
HpyAV CCTTC 4 cut(s) 139, 766, 875, 896
HpyCH4III ACNGT 4 cut(s) 319, 464, 949, 958
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 63, 89, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 247
HpyF3I CTNAG 2 cut(s) 785, 806
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 6 cut(s) 223, 286, 400, 417, 569, 803
Kpn2I TCCGGA 1 cut(s) 493
Kzo9I GATC 3 cut(s) 285, 387, 930
LmnI GCTCC 7 cut(s) 79, 255, 359, 562, 827, 969, 979
Lsp1109I GCAGC 2 cut(s) 287, 482
MaeI CTAG 1 cut(s) 537
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 416
MalI GATC 3 cut(s) 287, 389, 932
MboI GATC 3 cut(s) 285, 387, 930
MboII GAAGA 6 cut(s) 19, 44, 187, 662, 767, 877
MfeI CAATTG 1 cut(s) 761
MhlI GDGCHC 4 cut(s) 364, 832, 966, 976
MluCI AATT 2 cut(s) 761, 924
MmeI TCCRAC 2 cut(s) 421, 888
MroI TCCGGA 1 cut(s) 493
MseI TTAA 2 cut(s) 687, 923
MslI CAYNNNNRTG 3 cut(s) 395, 429, 585
MspI CCGG 4 cut(s) 277, 357, 494, 977
MspR9I CCNGG 3 cut(s) 225, 726, 939
MunI CAATTG 1 cut(s) 761
Mva1269I GAATGC 1 cut(s) 717
MvaI CCWGG 3 cut(s) 225, 726, 939
MwoI GCNNNNNNNGC 2 cut(s) 146, 247
NdeI CATATG 1 cut(s) 59
NdeII GATC 3 cut(s) 285, 387, 930
NlaIII CATG 6 cut(s) 223, 286, 400, 417, 569, 803
NlaIV GGNNCC 5 cut(s) 75, 117, 229, 498, 732
NmeAIII GCCGAG 3 cut(s) 105, 234, 370
NmuCI GTSAC 1 cut(s) 416
NspI RCATGY 2 cut(s) 223, 803
OliI CACNNNNGTG 1 cut(s) 585
PagI TCATGA 1 cut(s) 282
PctI GAATGC 1 cut(s) 717
PfeI GAWTC 1 cut(s) 106
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 4 cut(s) 139, 302, 469, 472
PpuMI RGGWCCY 2 cut(s) 115, 731
Psp124BI GAGCTC 1 cut(s) 364
Psp5II RGGWCCY 2 cut(s) 115, 731
Psp6I CCWGG 3 cut(s) 223, 724, 937
PspGI CCWGG 3 cut(s) 223, 724, 937
PspN4I GGNNCC 5 cut(s) 75, 117, 229, 498, 732
PspPI GGNCC 4 cut(s) 115, 496, 731, 935
PspPPI RGGWCCY 2 cut(s) 115, 731
PstNI CAGNNNCTG 1 cut(s) 451
RsaI GTAC 1 cut(s) 804
RsaNI GTAC 1 cut(s) 803
RseI CAYNNNNRTG 3 cut(s) 395, 429, 585
SacI GAGCTC 1 cut(s) 364
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 687, 923
SatI GCNGC 4 cut(s) 138, 301, 468, 471
Sau3AI GATC 3 cut(s) 285, 387, 930
Sau96I GGNCC 4 cut(s) 115, 496, 731, 935
ScrFI CCNGG 3 cut(s) 225, 726, 939
SduI GDGCHC 4 cut(s) 364, 832, 966, 976
SfcI CTRYAG 1 cut(s) 712
SinI GGWCC 3 cut(s) 115, 496, 731
SmiMI CAYNNNNRTG 3 cut(s) 395, 429, 585
Sse9I AATT 2 cut(s) 761, 924
SsiI CCGC 2 cut(s) 137, 467
SspMI CTAG 1 cut(s) 537
SstI GAGCTC 1 cut(s) 364
StyD4I CCNGG 3 cut(s) 223, 724, 937
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 4 cut(s) 319, 464, 949, 958
TaiI ACGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 176, 216
TasI AATT 2 cut(s) 761, 924
TatI WGTACW 1 cut(s) 802
TauI GCSGC 2 cut(s) 140, 470
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 687, 923
Tru9I TTAA 2 cut(s) 687, 923
TscAI CASTG 1 cut(s) 988
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 2 cut(s) 300, 470
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 271, 710
TspGWI ACGGA 1 cut(s) 956
TspRI CASTG 1 cut(s) 988
VpaK11BI GGWCC 3 cut(s) 115, 496, 731
XceI RCATGY 2 cut(s) 223, 803
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.