Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004672.1

Orthogroup ID

OG0000409

Physical Location & Seq

Genomic Coordinates Forward (+)

4576 .. 5303

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004672.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggtgaccgtcgaggaagtccgcaaggctcaacgcgctgaaggtccagccaccgtcttggccatcgggacagccactcctcccaactgtattgaccagagcacataccccgactactattttcgtatcaccaacagcgagcacaaggctgagctcaaggagaaattccagcgcatgtgtgacaaatctatgatcaagaagcgttatatgtatttgactgaagaaattctcaaagagaatcccagcatgtgtgagtacatggccccttcacttgatgcaagacaagacatggtggttgttgaaattccaaagcttgggaaagaggctgccactaaggccattaaagaatgggctcttgggcctccgcccgtccgtcaagcgtctcatgatgtaccagcaagggtgttttgccggaggcacggtgctccggttggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009812 GO:0009813 GO:0016210 GO:0016740 GO:0016746 GO:0016747 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 ko04712 map00941 map01100 map01110 map04712

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N

Protein Analysis

145

Amino Acids

16.4

Weight (kDa)

8.66

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13930
fragaria_vesca	FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica	MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica	Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis	pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis	RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata	RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora	Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa	Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha	Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana	Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	22, 365
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	3 cut(s)	164, 225, 303
AcuI	CTGAAG	2 cut(s)	60, 240
AfaI	GTAC	2 cut(s)	257, 393
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AluBI	AGCT	2 cut(s)	154, 313
AluI	AGCT	2 cut(s)	154, 313
Alw21I	GWGCWC	4 cut(s)	104, 144, 156, 427
Alw26I	GTCTC	1 cut(s)	387
AoxI	GGCC	4 cut(s)	60, 261, 336, 359
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	3 cut(s)	164, 225, 303
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	2 cut(s)	38, 174
AspS9I	GGNCC	3 cut(s)	44, 262, 359
AsuHPI	GGTGA	2 cut(s)	16, 121
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	156, 355
Bbv12I	GWGCWC	4 cut(s)	104, 144, 156, 427
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	387
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	1 cut(s)	327
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	44, 262, 359
BmiI	GGNNCC	1 cut(s)	264
BmsI	GCATC	1 cut(s)	265
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	140
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 406, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	4 cut(s)	62, 263, 338, 361
BsiHKAI	GWGCWC	4 cut(s)	104, 144, 156, 427
BsiSI	CCGG	2 cut(s)	412, 428
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	387
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	4 cut(s)	62, 263, 338, 361
Bsp1286I	GDGCHC	5 cut(s)	104, 144, 156, 355, 427
Bsp143I	GATC	1 cut(s)	192
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	2 cut(s)	22, 365
BspANI	GGCC	4 cut(s)	62, 263, 338, 361
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	264
BssMI	GATC	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	10, 55, 89, 422
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	150, 333
BstEII	GGTNACC	1 cut(s)	4
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	38, 174
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 335
BstNSI	RCATGY	2 cut(s)	178, 250
BstPI	GGTNACC	1 cut(s)	4
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuRI	GGCC	4 cut(s)	62, 263, 338, 361
Cac8I	GCNNGC	1 cut(s)	140
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	2 cut(s)	38, 174
Cfr13I	GGNCC	3 cut(s)	44, 262, 359
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	256, 392
CviAII	CATG	5 cut(s)	175, 247, 259, 289, 386
CviQI	GTAC	2 cut(s)	256, 392
DdeI	CTNAG	2 cut(s)	150, 333
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	156, 355
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	60, 240
Eco91I	GGTNACC	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	4
EcoT38I	GRGCYC	2 cut(s)	156, 355
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	5 cut(s)	178, 250, 262, 292, 389
FaiI	YATR	9 cut(s)	106, 176, 191, 207, 209, 248, 260, 290, 387
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	5 cut(s)	174, 246, 258, 288, 385
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	327
FriOI	GRGCYC	2 cut(s)	156, 355
Fsp4HI	GCNGC	1 cut(s)	327
GlaI	GCGC	2 cut(s)	37, 173
GluI	GCNGC	1 cut(s)	327
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	4 cut(s)	62, 263, 338, 361
HapII	CCGG	2 cut(s)	412, 428
HgaI	GACGC	1 cut(s)	369
HhaI	GCGC	2 cut(s)	38, 174
Hin1II	CATG	5 cut(s)	178, 250, 262, 292, 389
Hin6I	GCGC	2 cut(s)	36, 172
HinP1I	GCGC	2 cut(s)	36, 172
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	412, 428
HphI	GGTGA	2 cut(s)	16, 121
Hpy188III	TCNNGA	3 cut(s)	67, 196, 386
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	35, 276
HpyCH4III	ACNGT	4 cut(s)	10, 55, 89, 422
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 335
HpyF3I	CTNAG	2 cut(s)	150, 333
Hsp92II	CATG	5 cut(s)	178, 250, 262, 292, 389
HspAI	GCGC	2 cut(s)	36, 172
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	430
LpnPI	CCDG	6 cut(s)	60, 110, 182, 256, 408, 425
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	4, 179
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	5 cut(s)	104, 144, 156, 355, 427
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	3 cut(s)	164, 225, 303
MluNI	TGGCCA	1 cut(s)	62
MnlI	CCTC	5 cut(s)	7, 90, 316, 372, 408
Mox20I	TGGCCA	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	2 cut(s)	412, 428
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	35, 335
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	5 cut(s)	178, 250, 262, 292, 389
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	2 cut(s)	4, 179
NspI	RCATGY	2 cut(s)	178, 250
PagI	TCATGA	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	156
PspEI	GGTNACC	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	3 cut(s)	44, 262, 359
RsaI	GTAC	2 cut(s)	257, 393
RsaNI	GTAC	2 cut(s)	256, 392
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	3 cut(s)	44, 262, 359
SduI	GDGCHC	5 cut(s)	104, 144, 156, 355, 427
SetI	ASST	3 cut(s)	46, 156, 315
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	164, 225, 303
SsiI	CCGC	2 cut(s)	22, 365
SstI	GAGCTC	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	10, 55, 89, 422
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	164, 225, 303
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseFI	GTSAC	2 cut(s)	4, 179
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	2 cut(s)	4, 179
TspGWI	ACGGA	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	3 cut(s)	164, 225, 303
XceI	RCATGY	2 cut(s)	178, 250
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.