Rorug01G0011000

Belongs to the chalcone stilbene synthases family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
1883244 .. 1884315
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0011000.1

Sequence Viewer

Length: 909 bp
ATGGCTGCCGCCTTGATCTCTCGCAGATTCAGACCCTCTCACTGTTCTTCATCATTCTCCTCCATATCCTCCACATACTTCATCGCCCAAAAGCTCCAAAACCCTACTCCTAAACCATTCACTCACCTGTCCAATTCCACTTTCTCACAAACACCCTCAAACCCTTTCACATCTACTTCAAACCCCAACTCCATTTTCAAAGACTACAAAAGAACAGCACCAAATCCAAAACCCTTCAATGAAAAATCCACTAAAGCCTTAGCCTTTGATCCATCTTTGTCTTCTTCGATGCACCAAAGGGTTCTTGATCCAAAACCCAATAATTTCAATCTTGGTTTTACCGAATTGAACACTCCCAGATTTAAATGGCCGTCGGGTAATAGACCCAGATTTCTTTCAACCTCCGGTTCATCAGAACCTGAGAAACCCCAAAACCCAAGTCAGTACCCAAGTCAAAACCCAAATTTCAAGCACCAAGAAATCGAAGGACCGACTGTGGAGCGAGACCTCTCTGATTTGGGCAATGAGACCCGAACAGTCCTTGAAGTGATGGCCAAGAACATGTATAGTTTGAGCAGGACTGTGGCTGTTCTGGGTTTGGTTCAGCTCGGCCTGGGAGCTTACATTTCATACATGACTCGGTCTTCGCCAATACCTGAAGTATCAATTCAGAGCTTTTTGGCATTCGGGTTTCCCTTCTCTTTGGCGTTCATGTTGAGGCAGTCTCTGAAGCCAATCTACTTCTTTAAGAAGATGGAGGAGCAAGGTAGGCTGCAGATTCTGACTCTTGCTCTTCAGGTTGCTAAGAATTTAAATGTTTTCTTCATTCGGGTTCGTGGGGTGTCTGTCTTGTGTATTGCTGGTTTGTCAGCTGGAGTTTTGTTCCAACTTGCTTACAAGTTGACTTGA

Protein Analysis

302

Amino Acids

33.74

Weight (kDa)

10.03

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13930
fragaria_vesca FvH4_2g28040 FvH4_2g28050 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160 FvH4_7g01160
malus_domestica MD04G1003000.v1.1 MD04G1003300.v1.1 MD04G1003400.v1.1 MD04G1111500.v1.1 MD08G1116200.v1.1 MD13G1285100.v1.1 MD14G1160800.v1.1 MD14G1160900.v1.1 MD15G1131700.v1.1 MD15G1132000.v1.1 MD15G1132100.v1.1 MD15G1132200.v1.1 MD15G1132300.v1.1
prunus_persica Prupe.1G002900_v2.0.a1 Prupe.1G002900_v2.0.a1 Prupe.1G003000_v2.0.a1 Prupe.4G252100_v2.0.a1 Prupe.4G252800_v2.0.a1 Prupe.4G253000_v2.0.a1 Prupe.4G253100_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005700_v2.0.a1 Prupe.I005800_v2.0.a1
pyrus_communis pycom04g00310 pycom04g00320 pycom04g00350 pycom13g10200 pycom15g11900 pycom15g11910 pycom15g11920 pycom15g11930 pycom15g11940 pycom420g00730
rosa_chinensis RchiOBHm_Chr1g0316441 RchiOBHm_Chr1g0316451 RchiOBHm_Chr1g0316461 RchiOBHm_Chr4g0399981 RchiOBHm_Chr6g0296951 RchiOBHm_Chr6g0297001 RchiOBHm_Chr6g0297011
rosa_laevigata RLG00000009221 RLG00000011646 RLG00000030671 RLG00000030673
rosa_multiflora Rmu_co8031452.1_g000001 Rmu_co8152518.1_g000001 Rmu_sc0000081.1_g000010 Rmu_sc0004672.1_g000001 Rmu_sc0006453.1_g000028 Rmu_sc0006790.1_g000004 Rmu_sc0007272.1_g000004 Rmu_sc0023107.1_g000002 Rmu_sc0023714.1_g000001
rosa_roxburghii Rroxscaffold_4G00330980 Rroxscaffold_4G00330990 Rroxscaffold_4G00331000 Rroxscaffold_7G00171030
rosa_rugosa Rorug01G0010500 Rorug01G0010600 Rorug01G0011000 Rorug03G0299400 Rorug03G0299500 Rorug04G0022100 Rorug05G0381700 Rorug06G0267700
rosa_samantha Rh1AG020500 Rh1BG015600 Rh1BG015800 Rh1CG018400 Rh1CG018600 Rh1CG018800 Rh1DG015500 Rh1DG015700 Rh1DG015900 Rh4AG097700 Rh4BG095700 Rh4CG106900 Rh4DG092500 Rh6AG378300 Rh6BG386300 Rh6CG392100 Rh6CG392300 Rh6DG379000
rosa_wichuraiana Rw0G010230 Rw1G001330 Rw1G001340 Rw4G008110 Rw4G013630 Rw6G033070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 263, 302
AcoI YGGCCR 2 cut(s) 368, 552
AcsI RAATTY 2 cut(s) 463, 808
AcuI CTGAAG 3 cut(s) 678, 749, 779
AfaI GTAC 1 cut(s) 446
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 8 cut(s) 180, 199, 238, 328, 349, 399, 469, 545
AjnI CCWGG 1 cut(s) 612
AjuI GAANNNNNNNTTGG 4 cut(s) 125, 157, 179, 211
AluBI AGCT 5 cut(s) 94, 607, 620, 675, 872
AluI AGCT 5 cut(s) 94, 607, 620, 675, 872
Alw26I GTCTC 3 cut(s) 498, 521, 729
AlwI GGATC 2 cut(s) 263, 302
AlwNI CAGNNNCTG 3 cut(s) 419, 727, 781
AoxI GGCC 3 cut(s) 368, 552, 610
ApeKI GCWGC 2 cut(s) 5, 772
ApoI RAATTY 2 cut(s) 463, 808
ArsI GACNNNNNNTTYG 4 cut(s) 424, 456, 628, 660
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 488
BalI TGGCCA 1 cut(s) 554
BarI GAAGNNNNNNTAC 2 cut(s) 722, 754
BbsI GAAGAC 2 cut(s) 273, 636
BbvI GCAGC 1 cut(s) 759
BccI CCATC 3 cut(s) 280, 544, 748
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 614
BcoDI GTCTC 3 cut(s) 498, 521, 729
BfmI CTRYAG 1 cut(s) 773
BisI GCNGC 3 cut(s) 6, 9, 773
BlsI GCNGC 3 cut(s) 7, 10, 774
Bme1390I CCNGG 1 cut(s) 614
Bme18I GGWCC 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 488
BmrFI CCNGG 1 cut(s) 614
BmsI GCATC 1 cut(s) 279
BpiI GAAGAC 2 cut(s) 273, 636
BplI GAGNNNNNCTC 2 cut(s) 709, 741
BpmI CTGGAG 1 cut(s) 894
Bpu10I CCTNAGC 1 cut(s) 259
BsaI GGTCTC 2 cut(s) 498, 521
BsaJI CCNNGG 1 cut(s) 613
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bse3DI GCAATG 1 cut(s) 529
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 1 cut(s) 613
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 1 cut(s) 411
BseRI GAGGAG 2 cut(s) 49, 773
BseXI GCAGC 1 cut(s) 759
BshFI GGCC 3 cut(s) 370, 554, 612
BsiSI CCGG 1 cut(s) 405
BsmAI GTCTC 3 cut(s) 498, 521, 729
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 3 cut(s) 370, 554, 612
Bso31I GGTCTC 2 cut(s) 498, 521
Bsp143I GATC 3 cut(s) 15, 268, 307
BspACI CCGC 1 cut(s) 9
BspANI GGCC 3 cut(s) 370, 554, 612
BspCNI CTCAG 1 cut(s) 412
BspMAI CTGCAG 1 cut(s) 777
BspPI GGATC 2 cut(s) 263, 302
BspQI GCTCTTC 1 cut(s) 798
BspTNI GGTCTC 2 cut(s) 498, 521
BsrDI GCAATG 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 3 cut(s) 15, 268, 307
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 4 cut(s) 44, 496, 538, 583
Bst6I CTCTTC 1 cut(s) 798
BstDEI CTNAG 3 cut(s) 259, 420, 804
BstKTI GATC 3 cut(s) 18, 271, 310
BstMAI GTCTC 3 cut(s) 498, 521, 729
BstMBI GATC 3 cut(s) 15, 268, 307
BstMWI GCNNNNNNNGC 1 cut(s) 769
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 1 cut(s) 612
BstSFI CTRYAG 1 cut(s) 773
BstV1I GCAGC 1 cut(s) 759
BstV2I GAAGAC 2 cut(s) 273, 636
BsuRI GGCC 3 cut(s) 370, 554, 612
BtgZI GCGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 40
CaiI CAGNNNCTG 3 cut(s) 419, 727, 781
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 1 cut(s) 445
CviAII CATG 3 cut(s) 562, 634, 712
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 3 cut(s) 259, 420, 804
DpnI GATC 3 cut(s) 17, 270, 309
DpnII GATC 3 cut(s) 15, 268, 307
DraI TTTAAA 2 cut(s) 364, 813
EaeI YGGCCR 2 cut(s) 368, 552
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco31I GGTCTC 2 cut(s) 498, 521
Eco47I GGWCC 1 cut(s) 488
Eco57I CTGAAG 3 cut(s) 678, 749, 779
EcoRII CCWGG 1 cut(s) 612
FaeI CATG 3 cut(s) 565, 637, 715
FaiI YATR 7 cut(s) 65, 76, 563, 567, 631, 635, 713
FatI CATG 3 cut(s) 561, 633, 711
Fnu4HI GCNGC 3 cut(s) 6, 9, 773
Fsp4HI GCNGC 3 cut(s) 6, 9, 773
GluI GCNGC 3 cut(s) 6, 9, 773
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 3 cut(s) 370, 554, 612
HapII CCGG 1 cut(s) 405
Hin1II CATG 3 cut(s) 565, 637, 715
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HinfI GANTC 4 cut(s) 27, 637, 778, 784
HpaII CCGG 1 cut(s) 405
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 903
Hpy188I TCNGA 6 cut(s) 32, 415, 514, 672, 729, 783
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 903
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 3 cut(s) 244, 479, 706
HpyCH4III ACNGT 4 cut(s) 44, 496, 538, 583
HpyCH4V TGCA 2 cut(s) 292, 775
HpyF10VI GCNNNNNNNGC 1 cut(s) 769
HpyF3I CTNAG 3 cut(s) 259, 420, 804
Hsp92II CATG 3 cut(s) 565, 637, 715
Kzo9I GATC 3 cut(s) 15, 268, 307
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 4 cut(s) 99, 499, 617, 760
Lsp1109I GCAGC 1 cut(s) 759
LweI GCATC 1 cut(s) 279
MalI GATC 3 cut(s) 17, 270, 309
MboI GATC 3 cut(s) 15, 268, 307
MboII GAAGA 7 cut(s) 39, 273, 276, 636, 763, 785, 814
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 6 cut(s) 133, 322, 344, 463, 666, 808
MluNI TGGCCA 1 cut(s) 554
MlyI GAGTC 2 cut(s) 631, 778
MnlI CCTC 8 cut(s) 46, 70, 79, 166, 412, 518, 711, 751
Mox20I TGGCCA 1 cut(s) 554
MscI TGGCCA 1 cut(s) 554
MseI TTAA 3 cut(s) 363, 747, 812
Msp20I TGGCCA 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 872
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 614
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 1 cut(s) 614
MwoI GCNNNNNNNGC 1 cut(s) 769
NdeII GATC 3 cut(s) 15, 268, 307
NlaIII CATG 3 cut(s) 565, 637, 715
NmeAIII GCCGAG 1 cut(s) 588
NspI RCATGY 1 cut(s) 565
PciI ACATGT 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 798
PctI GAATGC 1 cut(s) 683
PfeI GAWTC 2 cut(s) 27, 778
PflFI GACNNNGTC 1 cut(s) 640
PkrI GCNGC 3 cut(s) 7, 10, 774
PleI GAGTC 2 cut(s) 631, 778
PpsI GAGTC 2 cut(s) 631, 778
PscI ACATGT 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspPI GGNCC 1 cut(s) 488
PstI CTGCAG 1 cut(s) 777
PstNI CAGNNNCTG 3 cut(s) 419, 727, 781
PsyI GACNNNGTC 1 cut(s) 640
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 3 cut(s) 363, 747, 812
SatI GCNGC 3 cut(s) 6, 9, 773
Sau3AI GATC 3 cut(s) 15, 268, 307
Sau96I GGNCC 1 cut(s) 488
SchI GAGTC 2 cut(s) 631, 778
ScrFI CCNGG 1 cut(s) 614
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 773
SinI GGWCC 1 cut(s) 488
SmiI ATTTAAAT 2 cut(s) 364, 813
Sse9I AATT 6 cut(s) 133, 322, 344, 463, 666, 808
SsiI CCGC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 612
SwaI ATTTAAAT 2 cut(s) 364, 813
TaaI ACNGT 4 cut(s) 44, 496, 538, 583
TaqI TCGA 2 cut(s) 287, 483
TaqII GACCGA 2 cut(s) 505, 630
TasI AATT 6 cut(s) 133, 322, 344, 463, 666, 808
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 27, 778
Tru1I TTAA 3 cut(s) 363, 747, 812
Tru9I TTAA 3 cut(s) 363, 747, 812
TscAI CASTG 1 cut(s) 47
TseI GCWGC 2 cut(s) 5, 772
TspDTI ATGAA 7 cut(s) 39, 70, 255, 399, 618, 700, 814
TspRI CASTG 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 640
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 2 cut(s) 463, 808
XceI RCATGY 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.